New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1446828 =	11 (0.340)	7 (0.220)	7/488	1.6	38.9%	coding (456/906 nt)	feaR	DNA‑binding transcriptional activator FeaR
	?	NC_000913	1467910 =	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

ACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTGAAAAACGGTGTAAAACCAG  >  NC_000913/1446584‑1447077                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                          cggagtccggagagtaacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATGACt                                                                                                                                                                                                                                                      >  1:42669‑M1/246‑251 (MQ=255)  cATTCGGTACACACTAAGTACTGACATACCTGACTCTCCGGCTTTCCACTCCGGGCGTACTATCTCTTCGCGAATATTATCGCCTATCACCGTAACCACTTTTTGAAACTGACGTTCACGACGAGGCTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATAGCCTGTAGTGCACCTTCACTTTCTGTTTTAGAACGCGCCGGCTTATTCATGCTC‑TCCTGTAACAGTCGATGACTgc                                                                                                                                                                                                                                                    >  2:38002/1‑250 (MQ=255)                                       gaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTg                                                                                                                                                                                                                >  1:164054‑M1/208‑251 (MQ=255)                                            cgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTgcgc                                                                                                                                                                                                             <  2:77177‑M1/47‑1 (MQ=255)                                                    ccgtgcttaagataccgtagagAATATTCTCGTTTATCAACGTAACCACTTGCTGAAACTGACGTTCCCGACGAGGTTGAACAGTGTGATGTTGATGAAGGAACGGGCGCAGAAGATACACAATCGAAGTTAGCGCAGCTTCACTTGATGTTTCAGAAAGGGCAGGATTATTTACG‑TCATTCTGTAATAGGCGATGACTTAGTTGCACTATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGttt                                                                                                                                                                                                   <  1:258686/229‑1 (MQ=255)                                                                                atCGTATATCAACGTAACCACTTTTTGAAACTGCCGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCcagcag                                                                                                                                                                        >  2:238265/1‑249 (MQ=255)                                                                                    tCTATCAACGTAAGCACTTTTTGCAACTGCCGTTCAAGACGAGTTTGAACAGATTCCCGCTGATGAAGTACAGGGCGCAGCAGCCACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGCTGACTGAGTTGCACCATGGGGAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg                                                                                                                                                                  >  2:275307/1‑251 (MQ=255)                                                                                                          gAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGt                                                                                                                                            >  2:225191/1‑251 (MQ=255)                                                                                                                                 taacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataaaagatgtctggaaatataggggcaaatccaATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGACAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTaa                                                                                                                       <  1:15161‑M1/133‑1 (MQ=255)                                                                                                                                     gaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCg                                                                                                                   <  1:226514‑M1/137‑1 (MQ=255)                                                                                                                                                  atgaAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAgg                                                                                                    <  1:225191/251‑1 (MQ=255)                                                                                                                                                                gcagcaGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCAGCGAGTAACGTa                                                                                      <  1:238265/251‑1 (MQ=255)                                                                                                                                                                               gaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGcc                                                                        <  1:96803‑M1/180‑1 (MQ=255)                                                                                                                                                                                                                aaaGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCattatt                                      <  1:192982/251‑1 (MQ=255)                                                                                                                                                                                                                     gCCGGATTATTCATGCTC‑TCCTGTAGCAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAAGATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAAGCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCTCCTGACGCTCATCCTGCTCCATTATTGCCTg                                 <  1:275307/251‑1 (MQ=255)                                                                                                                                                                                                                           ttattCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACt                           >  1:166486/1‑251 (MQ=255)                                                                                                                                                                                                                                                 aGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGGCCAGTCTTTCGGCGCAGATAGTTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAAGGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGATTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTGAAAAACGGTGTaaaa      <  2:298147/251‑1 (MQ=255)                                                                                                                                                                                                                                                     aATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTGCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTGAAAAACGGTGTAAAACCAg  >  2:226514‑M1/2‑251 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                          ACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTC‑TCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTGAAAAACGGTGTAAAACCAG  >  NC_000913/1446584‑1447077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.