New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 382398	NA (NA)	5 (0.160)	5/484	1.9	NA	noncoding (1139/1331 nt)	IS2	repeat region
	?	NC_000913	= 382590	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

GTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTC  >  NC_000913/382343‑382831                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  gTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAAtt                                                                                                                                                                                                                                                <  1:5527/251‑1 (MQ=11)              agagTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAg                                                                                                                                                                                                                                   <  1:78176/251‑1 (MQ=35)                                          gAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTTCAGAGGCGTTCGAGCATTATAACGAAGGGCATCCGCATAGTGCGCTGGGTTATCGCGCGCCACGGGAATATCTGCGGCAGCGGGCGTGTAATGGGGTAAGTGATAACAGATGTCGGGAAATATAGGGGCAAATCCAAATACCTATCAGGCAGTTTGCGCCAAACACTTCCGGACCCTGa                                                                                                                                                                                                        <  2:317020/250‑1 (MQ=14)                                            aaaCGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGCGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGAAGTTTGCGCCAATCACTACCGGACCCTGAAt                                                                                                                                                                                                      >  2:259457/1‑250 (MQ=255)                                               cGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACTGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGATTGGCATCCGCATAGTGCGCTGGGTCATCGCTCGCCACGGGATTATCTGCTGCAGCCGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTAGCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACg                                                                                                                                                                                                  <  1:314735/251‑1 (MQ=17)                                                gATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACgg                                                                                                                                                                                                 >  1:114933/1‑251 (MQ=255)                                                              aCATCAGTATCATGCCCAAACCAGACTGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTGTAACGAATGGCATCCGCATAGTGCGCTTGGTTATCGCTCGCCACGTGAATATCTGCGGCAGCGGGCTTGTAATTGGTTAAGTGATAACAGATGTCTGGAAATATATGGTCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATACCGGCACCATGACAAATa                                                                                                                                                                                   <  1:318723/251‑1 (MQ=17)                                                                aTCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGAAGAGGCGTTCGAGCATTATAACGAATGGCATCTGCATAGTGCGCTGGGTTATCGCTAGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCCATTACCTATCAGGCAGTTTGCGCCAATCACTACAGGACCCTGATTAACGGCACCATGACAAATACg                                                                                                                                                                                 >  1:116671/1‑251 (MQ=255)                                                                     tATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTAt                                                                                                                                                                            >  2:295192/1‑251 (MQ=255)                                                                      aTCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTAtt                                                                                                                                                                           >  2:15489/1‑251 (MQ=255)                                                                            cccAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTGATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGcc                                                                                                                                                                     <  2:100389/251‑1 (MQ=255)                                                                               aaaCCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGAt                                                                                                                                                                  >  1:90163/1‑251 (MQ=255)                                                                                    aGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATaaca                                                                                                                                                              >  1:57696/1‑250 (MQ=255)                                                                                                                   gagGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTGGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTGTGCGCCAATGTCTACCGGACCCTTAATGACGGCTCCATGACAAATACGGGTATTCGCGCCGATAACAACGTCACGTGCAGTCTCATCGAGAATTACCTg                                                                                                                              <  2:168403/251‑1 (MQ=18)                                                                                                                   gagGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTg                                                                                                                              <  2:83907/251‑1 (MQ=255)                                                                                                                                             gCATCTGCATAGTGCGCTGGGTTCTCGCTCGCCACGGGAATCTCTGCGGCAGCGGGCTTGCAATGGGTTAAGTGATCACAGATGTCTGGAAATATCGGGGCCAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACACATACGGGTAt                                                                                                                                                                            >  2:25752/1‑179 (MQ=255)                                                                                                                                             gCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAAGGGGTTAAGTGATAAAAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTAt                                                                                                                                                                            <  1:25752/179‑1 (MQ=255)                                                                                                                                                 ccGCATAGCGCGCTGGGTTATCGCTCGCCACGGGAATATCGGCGGCAGCGTGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGGCCCTGAATAACTGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTaa                                                                                                 <  2:111641/250‑1 (MQ=255)                                                                                                                                                     aTAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAAtt                                                                                                                                   <  1:327158/212‑1 (MQ=255)                                                                                                                                                     aTAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTAACCTGCAGTTTCATCAATAAtt                                                                                                                                   >  2:327158/1‑212 (MQ=255)                                                                                                                                                              tGGGTTATCGATCGCCAAGGGAATATCTGCTGCCGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTAACTATCAGGCCGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTATGCAATCTGAATATTTTTCTCTTTACCATTAAGCTTc                                                                                      >  2:217288/1‑248 (MQ=38)                                                                                                                                                               gggTTATCGCTCGCCACGGTAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATTTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGTCCCTGAATAACGGCCCCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAg                                                                                    <  2:184713/249‑1 (MQ=255)                                                                                                                                                                  ttATCGCTCGAAACGGGACAATCTGCGGAAGCGGGATTGTAATGGGTTCAGAGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGACAGTTTGCACCAATCAATACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATCCGCGCCGCTAACAACATCACCTGAAGATTCATCCATAATTCCCTGGACTGCAATCTGAATATTTTTCTCTTACACATTCAGCtcaagctagt                                                                               >  2:24039/1‑242 (MQ=21)                                                                                                                                                                               cGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCtg                                                                  >  1:101267/1‑251 (MQ=255)                                                                                                                                                                                             gCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATAAGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCCATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGCCAGAAGGTTgg                                                    >  1:322247/1‑251 (MQ=255)                                                                                                                                                                                                 cGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAAt                                                <  1:249286/251‑1 (MQ=255)                                                                                                                                                                                                  gggCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGAACCTGAATAACGGCACCATGACAAATACGGGAATTCGCGCCGATAACACCTTCACCTg                                                                                                                                                    >  1:14888/1‑150 (MQ=255)                                                                                                                                                                                                  gggCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAAGTACCTATCAGGCAGTGTGCGCCAATCACTACCGGACCCTGAATAACGGCACCAGGACAAATACGGGTAGTCGCGCCGATAACAACTTCACCTg                                                                                                                                                    <  2:14888/150‑1 (MQ=37)                                                                                                                                                                                                                 tAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCttt                                                                                                   >  2:60271/1‑184 (MQ=255)                                                                                                                                                                                                                 tAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCttt                                                                                                   <  1:60271/184‑1 (MQ=255)                                                                                                                                                                                                                 tAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTGCTCTTTAACATTAAGCTTCAGATAGTTGTTCAGTTCCTGTGACAGAAGGTTGGGAATATGTGGTTGACGCtt                                 <  2:112962/250‑1 (MQ=255)                                                                                                                                                                                                                          aCAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTAGCGACGATAACAACTTCAACTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGATTCCACCAGTGc                       >  1:299222/1‑251 (MQ=255)                                                                                                                                                                                                                                    ggAAATATAGTGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCgg             <  2:228215/251‑1 (MQ=255)                                                                                                                                                                                                                                               ggCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTc  <  1:292867/251‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  GTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTC  >  NC_000913/382343‑382831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.