mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 100,946 | T→C | M61T (ATG→ACG) | murC → | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 366,181 | Δ93 bp | coding (33‑125/3075 nt) | lacZ ← | beta‑galactosidase |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 496,382 | C→G | S421S (TCC→TCG) | htpG → | chaperone protein HtpG |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 822,527 | C→T | E405K (GAA→AAA) | clsB ← | cardiolipin synthase B |
| JC JC | 886,412 | IS2 (–) +5 bp | coding (924‑928/1209 nt) | ybjJ ← | inner membrane protein YbjJ |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,098,620 | T→A | V245V (GTT→GTA) | ghrA → | glyoxylate/hydroxypyruvate reductase A |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,194,922 | G→A | T10T (ACC→ACT) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375L (TTA→CTA) | icd → | isocitrate dehydrogenase |
| JC JC | 1,223,636 | IS2 (–) +5 bp | intergenic (+187/+639) | ymgJ → / ← minE | uncharacterized protein YmgJ/Z‑ring positioning protein MinE |
| RA | 1,253,002 | C→T | intergenic (+17/+83) | dhaR → / ← ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| JC JC | 1,301,050 | IS1 (+) +9 bp | intergenic (+503/‑124) | insH21 → / → oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,441,038 | G→A | intergenic (‑254/‑20) | ydbK ← / → ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
| RA | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| RA | 1,584,092 | G→A | intergenic (‑133/+115) | safA ← / ← ydeP | two‑component system connector SafA/putative oxidoreductase YdeP |
| RA | 1,629,247 | C→T | I11I (ATC→ATT) | ydfZ → | putative selenoprotein YdfZ |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| JC JC | 1,652,623 | IS2 (–) +5 bp | intergenic (+2638/+101) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,667,460 | G→A | Q369* (CAG→TAG) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,682,459 | A→G | K101E (AAA→GAA) | rstA → | DNA‑binding transcriptional regulator RstA |
| RA | 1,748,841 | C→T | R240K (AGA→AAA) | ydhT ← | uncharacterized protein YdhT |
| RA | 1,767,014 | C→T | G558S (GGT→AGT) | ydiJ ← | putative FAD‑linked oxidoreductase YdiJ |
| RA | 1,848,300 | 2 bp→TT | coding (376‑377/552 nt) | ydjA ← | putative oxidoreductase YdjA |
| RA | 1,849,629 | T→C | L265L (TTA→CTA) | sppA → | protease IV, a signal peptide peptidase |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,041,278 | G→A | intergenic (+160/‑97) | msrQ → / → zinT | membrane‑bound flavocytochrome MsrQ/metal‑binding protein ZinT |
| RA | 2,052,885 | G→A | intergenic (+871/‑758) | yeeJ → / → shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| JC JC | 2,089,842 | IS1 (+) +9 bp | intergenic (‑129/‑146) | yefM ← / → hisL | YefM antitoxin of the YoeB‑YefM toxin‑antitoxin pair and DNA binding transcriptional repressor/his operon leader peptide |
| RA | 2,104,024 | G→T | I162I (ATC→ATA) | wbbK ← | putative glycosyltransferase WbbK |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,142,598 | G→A | L117L (CTC→CTT) | udk ← | uridine/cytidine kinase |
| RA | 2,155,197 | G→A | Q394Q (CAG→CAA) | mdtA → | multidrug efflux pump membrane fusion protein MdtA |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,173,448 | C→T | intergenic (‑575/+834) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC JC | 2,176,844 | IS4 (–) +13 bp | coding (349‑361/855 nt) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 |
| RA | 2,233,609 | C→T | Q4* (CAG→TAG) | yeiS → | DUF2542 domain‑containing protein YeiS |
| JC JC | 2,238,948 | Δ1 bp :: IS186 (–) +6 bp :: Δ2 bp | coding (337‑342/1521 nt) | mglA ← | D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit |
| RA | 2,247,134 | A→C | Y467D (TAC→GAC) | lysP ← | lysine:H(+) symporter |
| RA | 2,307,733 | C→T | A295T (GCG→ACG) | yojI ← | ABC transporter family protein/microcin J25 efflux protein |
| RA | 2,310,878 | A→T | G219G (GGT→GGA) | ftp ← | FAD:protein FMN transferase |
| RA | 2,404,402 | G→A | S71L (TCG→TTG) | nuoB ← | NADH:quinone oxidoreductase subunit B |
| RA | 2,405,840 | +T | coding (802/939 nt) | lrhA ← | DNA‑binding transcriptional dual regulator LrhA |
| RA | 2,446,592 | C→A | P294P (CCG→CCT) | aroC ← | chorismate synthase |
| RA | 2,485,636 | Δ1 bp | coding (1263/3594 nt) | evgS → | sensor histidine kinase EvgS |
| RA | 2,485,638 | T→A | L422* (TTA→TAA) | evgS → | sensor histidine kinase EvgS |
| RA | 2,522,369 | G→A | P37S (CCG→TCG) | xapR ← | DNA‑binding transcriptional activator XapR |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,702,363 | G→A | A36V (GCC→GTC) | recO ← | recombination mediator protein RecO |
| RA | 2,774,947 | G→A | G544S (GGT→AGT) | yfjW → | uncharacterized protein YfjW |
| RA | 2,867,311 | G→T | R81S (CGT→AGT) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,880,635 | T→C | L138L (TTA→TTG) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,937,210 | C→T | L543F (CTC→TTC) | fucI → | L‑fucose isomerase |
| RA | 2,938,548 | A→T | T361S (ACG→TCG) | fucK → | L‑fuculokinase |
| RA | 3,025,601 | (T)5→4 | coding (1251/1401 nt) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,070,858 | T→G | K129N (AAA→AAC) | fbaA ← | fructose‑bisphosphate aldolase class II |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,279,276 | C→G | F121L (TTC→TTG) | kbaZ → | putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone |
| RA | 3,296,481 | G→A | V25M (GTG→ATG) | dolP → | division and outer membrane stress‑associated lipid‑binding lipoprotein |
| RA | 3,324,965 | G→T | intergenic (‑54/+36) | folP ← / ← ftsH | dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH |
| RA | 3,326,537 | C→A | S133S (TCG→TCT) | ftsH ← | ATP‑dependent zinc metalloprotease FtsH |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,433,900 | C→T | L71L (CTA→TTA) | def → | peptide deformylase |
| RA | 3,439,485 | C→T | E9K (GAG→AAG) | yhdN ← | DUF1992 domain‑containing protein YhdN |
| RA | 3,486,502 | C→T | T128I (ACT→ATT) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,486,538 | T→C | V140A (GTG→GCG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,511,466 | C→T | V293V (GTG→GTA) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,555,047 | G→C | V655L (GTC→CTC) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,362 | G→A | intergenic (+496/+260) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,730,560 | C→T | W69* (TGG→TAG) | xylA ← | xylose isomerase |
| RA | 3,770,539 | C→T | V281M (GTG→ATG) | yibH ← | inner membrane protein YibH |
| RA | 3,773,173 | Δ1 bp | coding (893/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,773,176 | C→T | S299F (TCT→TTT) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,925,834 | C→T | intergenic (‑201/+178) | mnmG ← / ← mioC | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG/flavoprotein MioC |
| RA | 3,926,991 | G→A | L5L (CTG→TTG) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| RA | 4,003,502 | G→T | P226Q (CCG→CAG) | rarD ← | putative transporter RarD |
| JC JC | 4,123,617 | IS2 (–) +5 bp | coding (836‑840/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,133,311 | G→A | P232P (CCG→CCA) | metF → | 5,10‑methylenetetrahydrofolate reductase |
| RA | 4,150,418 | A→G | intergenic (‑153/+29) | eptC ← / ← ppc | phosphoethanolamine transferase EptC/phosphoenolpyruvate carboxylase |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,217,310 | A→G | S68G (AGC→GGC) | aceA → | isocitrate lyase |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,331,890 | C→T | L463L (CTC→CTT) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,437,890 | C→T | Q62* (CAG→TAG) | ytfI → | protein YtfI |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,476,605 | G→A | S390N (AGC→AAC) | yjgL → | protein YjgL |
| RA | 4,489,016 | C→T | E350K (GAA→AAA) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,620,610 | G→A | L336L (CTG→CTA) | deoB → | phosphopentomutase |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| JC JC | 4,640,418 | IS30 (–) +2 bp | coding (17‑18/141 nt) | yjjY → | uncharacterized protein YjjY |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 256233 | 258988 | 2756 | 4 [3] | [2] 4 | [gpt]–[crl] | [gpt],frsA,crl,insB9,insA9,[crl] |
| * | * | ÷ | NC_000913 | 259235 | 259895 | 661 | 5 [3] | [3] 5 | phoE | outer membrane porin PhoE |
| * | * | ÷ | NC_000913 | 260009 | 260910 | 902 | 4 [2] | [3] 4 | [phoE]–[proB] | [phoE],[proB] |
| * | * | ÷ | NC_000913 | 262410 | 263243 | 834 | 4 [3] | [3] 4 | [proA]–thrW | [proA],thrW |
| * | * | ÷ | NC_000913 | 263560 | 265588 | 2029 | 4 [3] | [3] 4 | [ykfI]–ykfF | [ykfI],yafW,ykfH,ykfG,yafX,ykfF |
| * | * | ÷ | NC_000913 | 265878 | 267077 | 1200 | 4 [2] | [3] 4 | [ykfB]–yafY | [ykfB],yafY |
| * | * | ÷ | NC_000913 | 267186 | 269574 | 2389 | 4 [3] | [2] 4 | [yafZ]–[perR] | [yafZ],ykfA,[perR] |
| * | * | ÷ | NC_000913 | 269682 | 270113 | 432 | 4 [3] | [3] 4 | perR | putative transcriptional regulator PerR |
| * | * | ÷ | NC_000913 | 271718 | 272688 | 971 | 4 [2] | [3] 4 | [insI1]–eyeA | [insI1],insN,eyeA |
| * | * | ÷ | NC_000913 | 272816 | 273685 | 870 | 4 [3] | [3] 4 | [ykfC] | [ykfC] |
| * | * | ÷ | NC_000913 | 275312 | 276215 | 904 | 4 [3] | [3] 4 | [mmuP] | [mmuP] |
| * | * | ÷ | NC_000913 | 276605 | 277761 | 1157 | 4 [3] | [3] 5 | [mmuP]–[afuC] | [mmuP],mmuM,[afuC] |
| * | * | ÷ | NC_000913 | 277971 | 278901 | 931 | 4 [3] | [3] 4 | [afuC] | [afuC] |
| * | * | ÷ | NC_000913 | 282540 | 283266 | 727 | 4 [3] | [3] 4 | [yagE]–[yagF] | [yagE],[yagF] |
| * | * | ÷ | NC_000913 | 283882 | 284032 | 151 | 4 [3] | [3] 4 | yagF | D‑xylonate dehydratase |
| * | * | ÷ | NC_000913 | 284665 | 285446 | 782 | 4 [3] | [3] 4 | [yagF]–[yagG] | [yagF],[yagG] |
| * | * | ÷ | NC_000913 | 286815 | 287384 | 570 | 5 [3] | [3] 4 | yagH | putative xylosidase/arabinosidase |
| * | * | ÷ | NC_000913 | 287635 | 288870 | 1236 | 4 [3] | [3] 5 | [yagH]–[xynR] | [yagH],[xynR] |
| * | * | ÷ | NC_000913 | 288966 | 289432 | 467 | 4 [3] | [3] 4 | [xynR]–[argF] | [xynR],[argF] |
| * | * | ÷ | NC_000913 | 289967 | 290553 | 587 | 4 [3] | [3] 4 | [argF]–[ykgS] | [argF],argL,[ykgS] |
| * | * | ÷ | NC_000913 | 292726 | 293738 | 1013 | 4 [3] | [3] 4 | [yagK]–[yagL] | [yagK],[yagL] |
| * | * | ÷ | NC_000913 | 293926 | 295309 | 1384 | 4 [3] | [3] 4 | yagM–[yagN] | yagM,ykgV,[yagN] |
| * | * | ÷ | NC_000913 | 295373 | 359507 | 64135 | 4 [2] | [2] 4 | [yagN]–[cynS] | [yagN],intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,matA,ykgL,ykgO,ykgM,ykgR,insE1,insF1,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH,betA,betB,betI,betT,yahV,pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,[cynS] |
| * | * | ÷ | NC_000913 | 1196277 | 1197245 | 969 | 4 [2] | [3] 4 | [icd]–[ymfD] | [icd],C0293,[ymfD] |
| * | * | ÷ | NC_000913 | 1197275 | 1200889 | 3615 | 4 [3] | [3] 4 | [ymfD]–[xisE] | [ymfD],ymfE,lit,intE,[xisE] |
| * | * | ÷ | NC_000913 | 1201172 | 1202662 | 1491 | 4 [3] | [3] 4 | [ymfH]–[ymfK] | [ymfH],ymfI,ymfJ,[ymfK] |
| * | * | ÷ | NC_000913 | 1203275 | 1204813 | 1539 | 4 [3] | [2] 4 | [ymfL]–[ymfN] | [ymfL],ymfM,[ymfN] |
| * | * | ÷ | NC_000913 | 1205675 | 1207502 | 1828 | 4 [3] | [3] 4 | [ymfR]–[ycfK] | [ymfR],beeE,ymfQ,[ycfK] |
| * | * | ÷ | NC_000913 | 1207679 | 1208506 | 828 | 4 [3] | [3] 4 | [ycfK]–[tfaP] | [ycfK],[tfaP] |
| * | * | ÷ | NC_000913 | 1208550 | 1211116 | 2567 | 4 [3] | [0] 4 | [tfaE]–[mcrA] | [tfaE],pinE,[mcrA] |
| * | * | ÷ | NC_000913 | 1211267 | 1211502 | 236 | 5 [1] | [3] 4 | mcrA/iraM | Type IV methyl‑directed restriction enzyme EcoKMcrA/anti‑adaptor protein IraM |
| * | * | ÷ | NC_000913 | 2558699 | 2561191 | 2493 | 29 [3] | [3] 4 | intZ–yffL | intZ,yffL |
| * | * | ÷ | NC_000913 | 2561826 | 2562747 | 922 | 4 [3] | [3] 4 | [yffN]–[yffP] | [yffN],yffO,[yffP] |
| * | * | ÷ | NC_000913 | 2563017 | 2565027 | 2011 | 4 [3] | [3] 4 | [yffP]–[yffS] | [yffP],yffQ,yffR,[yffS] |
| * | * | ÷ | NC_000913 | 2565160 | 2565488 | 329 | 4 [2] | [2] 28 | [yffS]–[eutA] | [yffS],[eutA] |
| * | * | ÷ | NC_000913 | 2822736 | 2822974 | 239 | 4 [3] | [3] 4 | recA | DNA recombination/repair protein RecA |
| * | * | ÷ | NC_000913 | 2823684 | 2824866 | 1183 | 4 [2] | [3] 4 | [recA]–[mltB] | [recA],pncC,[mltB] |
| * | * | ÷ | NC_000913 | 2825527 | 2826747 | 1221 | 4 [3] | [3] 5 | [mltB]–[srlE] | [mltB],srlA,[srlE] |
| * | * | ÷ | NC_000913 | 2826996 | 2827461 | 466 | 4 [3] | [3] 4 | [srlE]–[srlB] | [srlE],[srlB] |
| * | * | ÷ | NC_000913 | 2827587 | 2828063 | 477 | 4 [2] | [3] 4 | [srlB]–[srlD] | [srlB],[srlD] |
| * | * | ÷ | NC_000913 | 2828260 | 2828614 | 355 | 4 [3] | [3] 5 | [srlD] | [srlD] |
| * | * | ÷ | NC_000913 | 2829291 | 2829585 | 295 | 4 [3] | [1] 5 | srlR | DNA‑binding transcriptional repressor SrlR |
| * | * | ÷ | NC_000913 | 3423872–3424233 | 3424432–3424238 | 6–561 | 4 [3] | [3] 4 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4035397–4036875 | 4036875 | 1–1479 | 4 [3] | [3] 4 | [rrsA] | [rrsA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 256107 | 2 (0.080) | 15 (0.610) | 14/470 | 0.6 | 57.8% | coding (131/459 nt) | gpt | xanthine‑guanine phsophoribosyltransferase |
| ? | NC_000913 | 371382 = | 20 (0.810) | coding (144/867 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase | |||||
| * | ? | NC_000913 | 381260 = | NA (NA) | 5 (0.200) | 5/486 | 2.1 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382183 | NA (NA) | noncoding (924/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 676358 = | 20 (0.780) | 10 (0.390) | 10/486 | 1.1 | 33.3% | coding (190/978 nt) | ybeQ | Sel1 repeat‑containing protein YbeQ |
| ? | NC_000913 | = 689045 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1469240 | NA (NA) | 27 (1.050) | 27/486 | 0.1 | 79.4% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1590540 | 7 (0.270) | intergenic (‑539/+314) | ydeT/hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA | |||||
| * | ? | NC_000913 | 1590536 = | 8 (0.320) | 6 (0.240) | 6/482 | 1.9 | 42.9% | intergenic (‑535/+318) | ydeT/hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA |
| ? | NC_000913 | = 1651548 | NA (NA) | noncoding (706/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2558698 | 3 (0.120) | 26 (1.050) | 24/470 | 0.1 | 93.0% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 1 (0.040) | coding (1396/1404 nt) | eutA | ethanolamine ammonia‑lyase reactivase EutA | |||||
| * | ? | NC_000913 | 2818058 = | 16 (0.630) | 6 (0.260) | 5/446 | 1.9 | 23.2% | intergenic (‑198/+1) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | = 2818337 | 25 (1.060) | intergenic (‑63/+136) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | NC_000913 | = 4038293 | NA (NA) | 4 (0.160) | 3/476 | 2.7 | NA | noncoding (775/2905 nt) | rrlA | 23S ribosomal RNA |
| ? | NC_000913 | 4038754 = | NA (NA) | noncoding (1236/2905 nt) | rrlA | 23S ribosomal RNA | |||||