| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1469240 | NA (NA) | 27 (1.050) | 27/486 | 0.1 | 79.4% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1590540 | 7 (0.270) | intergenic (‑539/+314) | ydeT/hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA | |||||
AACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTATGCGCACCAATATAAACCAA > NC_000913/1590296‑1590789 | aaCACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagact < 1:170438‑M2/251‑7 (MQ=255) ggagattaacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTTCCCGCTTGATcc > 1:245677‑M1/238‑251 (MQ=255) aTTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccct > 2:162130‑M2/1‑237 (MQ=255) ttGCTCTAAACAGATAAGTGCAGTGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGCCATCGTATTGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGCCTTAGCCATTTCTGATACCGGAGTGGAATCATTCCCGCTTGTTCCGTCCtt > 2:43487/1‑251 (MQ=255) aaaCAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACGGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACAGCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCAGTGAGACGGAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctc > 1:43617‑M2/1‑229 (MQ=255) aCAGATAAGTGCAGTGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTa < 1:43487/251‑1 (MQ=255) aTAAGTGCAGGGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagaca < 1:114206‑M2/250‑28 (MQ=255) gataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttacgtgataacagatgtctggaaatataggggcaaatccaTTCCCGCTTGATCCGTCCTTAAATAAGTAACCGCACCCTCTGGTGTTTTc < 2:76416‑M1/50‑1 (MQ=255) aGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagt < 1:189379‑M2/251‑49 (MQ=255) tGTCCGACAGACTTTCTTAACCTGGTAATATCTCTATTGGGTGACTCACCACACCTCCCCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTCATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACAGACGTGGCCTCATTCCCGCTTGATCCGTCCTTAAATAAGAAACAGCACCCTCTGGTGTTTTCGTATGc > 2:46068/1‑251 (MQ=255) gACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaat > 1:117179‑M2/1‑191 (MQ=255) ttCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGACTATTCCCGACTGATATGGGATAGCTTTCGTAACCGACAGCATAGGATGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCATGACTTCATTGAGACGTAACCATTTCTGATACCGGAGTGGACTCATTCCCtcgactggccccctgcatctccaaacaaccaatatcacttaaataagtgatagtcttaatact < 2:233063‑M2/250‑64 (MQ=255) tGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagcctgaccccctgaatctccagacaaccactatcacttaaataagtgatagtcttaatactagttttt < 1:162252‑M2/248‑71 (MQ=255) tctTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCAt > 1:153769/1‑251 (MQ=255) gTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGAAACCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagagatagtcttaatactagtttttagactagtcattggagaac < 1:275332‑M2/249‑90 (MQ=255) cagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAggg < 1:161387‑M1/99‑1 (MQ=255) gaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCa > 1:211091‑M1/145‑251 (MQ=255) gAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTGCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagac > 1:193475‑M2/1‑126 (MQ=255) ataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCaa > 1:76416‑M1/119‑250 (MQ=255) gATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttcgactagtcattggagaacagatgattgatgtcttagggccggagacacgcagacggcgtac < 2:7998‑M2/251‑133 (MQ=255) aagCATAGGCTGCGGTTGTGACATCGTAAGGTTCATTAAGCATCTGTCGCCTGTCTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATGCCCtagacgtgacccctgaatctccagacaaccaatatcccttaaataagtgatagtattaatactagtttttagactaggcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgttccacacaggaaaagatcgc > 2:4079‑M2/2‑101 (MQ=255) aGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGt < 1:46068/251‑1 (MQ=255) gctgTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccacctgaatctacagacaaacaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggacggagaaacgcagaaggcgtaccacacaggaaaagatcgcaattgttcagc < 2:112747‑M2/251‑162 (MQ=255) tgtgGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagc < 1:36860‑M2/249‑162 (MQ=255) gtggtgACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCTATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGa < 1:225249/251‑1 (MQ=255) aTCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttga < 1:74649‑M2/250‑172 (MQ=255) tAATGTTCATTCAGCATATGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagacacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccgg < 1:60537‑M2/251‑177 (MQ=255) gTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggat > 1:7998‑M2/1‑71 (MQ=255) gcggctggcttggaaatggttaatcgatgacagatgtcgggaaatataggggtaaatccaTGCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGCTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGGAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGTATAGGCTTAAGTGCTTGATCCCTGCACGAATAACTACTACCAGaaaa > 2:254074‑M1/61‑251 (MQ=255) cATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggagtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctcc < 2:191110‑M2/251‑191 (MQ=255) cgtgagcctgaCTTCATTGGGACGTAGCCATTTCTGATACCTGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccct > 2:93426‑M2/6‑58 (MQ=255) gACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCAc < 1:274184/249‑1 (MQ=255) gACTTCAGTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCCTTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccg > 2:114206‑M2/1‑49 (MQ=255) gagaCGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatgg > 1:191110‑M2/1‑40 (MQ=255) cgcCATTTCTGATACCGGAGTGGACTCATTCCCtagacttgcccccttaatctccagacaaccaataactcttaaataagtgataggcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaaagcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgctcgtcaacatggtgtagcag > 2:196784‑M2/2‑33 (MQ=255) tCTGATACCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagcc > 1:16871‑M2/1‑26 (MQ=255) aCCGGAGTGGACTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaagactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggtgatgacggtctccctcgttgctcggcaacatggtgtagtagccagccagttat > 1:228955‑M2/1‑20 (MQ=255) ggAATCATTCCCtagactggtcccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttgtagactaggcattggagaacagatgattgatgtcgtagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttcgctggc > 2:198832‑M2/1‑12 (MQ=255) aCTCATTCCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaataatagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctctggcgt < 1:171307‑M2/251‑242 (MQ=255) cctagactggacccctgaatctccagacaaccaatagcacataaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccgtcaacatggtgtagcagccagccagttatttctctggcgtaagcaata > 1:118275‑M2/1‑2 (MQ=255) | AACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGACTTTCTTAACCTGGTAATATCTCTCTTGGGTGACTCTCCAAACATCCGCGAATATTCCCGACTGAAATGGGATAGCTTTCGTAACCGACAGCATAGGCTGCTGTGGTGACATCGTAATGTTCATTCAGCATCTGTCGCCTGACTTCATTGAGACGTAGCCATTTCTGATACCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTATGCGCACCAATATAAACCAA > NC_000913/1590296‑1590789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |