New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	676358 =	20 (0.780)	10 (0.390)	10/486	1.1	33.3%	coding (190/978 nt)	ybeQ	Sel1 repeat‑containing protein YbeQ
	?	NC_000913	= 689045	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

CCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCTCGCAATCGCCTTTTTCAGCACGTTCGATAATCTCATCTATTGATAAATTATCGCAGCAACTTGACGTGAAAATCATTATCATTTCCTTATGGTTGCAGATAAAACATATTATATTTTTATGTGTTCC  >  NC_000913/676108‑676598                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                  agcatggtttccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgttgactcatgatgaaccctgttctttggccccagatgacaaacaagatatcatatcaggggcttgttcgcaccttccc                                                                                                                                                                                                                                                   <  2:5907‑M1/1‑1 (MQ=255)               cggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCtt                                                                                                                                                                                                                                     >  1:68458‑M1/237‑251 (MQ=255)                 gataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGc                                                                                                                                                                                                                                   >  1:5907‑M1/235‑251 (MQ=255)                      ggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaagctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGCTCAGc                                                                                                                                                                                                                              >  2:108169‑M1/230‑251 (MQ=255)                                                   tCCGCTCTCCGCGGCTATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGAttttt                                                                                                                                                                                                 >  1:206737/1‑251 (MQ=255)                                                     acggctcgatgacgtctaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctgatctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtcg                                                                                                                                                                                               >  2:78932‑M1/199‑251 (MQ=255)                                                           acgcgGCTATCTGATACCAGACAGGCGCTTTTTTATAATTGGGGGCTTATCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAATGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCCCATTATCTTTATGACGGCTTTTATCCTCGGTAGACGTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTcgtcgt                                                                                                                                                                                           <  1:277401/248‑1 (MQ=255)                                                               ggCTATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGACAGTAAAAGGCTTTTTCGTCGTCCgg                                                                                                                                                                                       >  2:203204/1‑249 (MQ=255)                                                                cctagcgaattcaaGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGTCCCAGGGTCCCGCCAAGAGCGTTGGAAGCGAAATTATGGCTTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATCCTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTTCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGgaga                                                                                                                                                                                    <  2:27159/238‑1 (MQ=255)                                                                                 ccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATcgc                                                                                                                                                                   >  1:142458‑M1/171‑251 (MQ=255)                                                                                 aaCCGCTTTGTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGGATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGTCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATcgc                                                                                                                                                                   <  1:271078/251‑1 (MQ=255)                                                                                    cGCTTCTTTATAATTGGGGGCTTCTCCACGATACAGTGTACAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGACAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGAATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGACTTTTTCGTCGTCCGGAGAATCAATTGCGCTCTcgcgtt                                                                                                                                                                >  1:20519/1‑249 (MQ=255)                                                                                        aaaatctgctctatgcggtacaagaaaatcgtctttctggtctgacggctcttactcctgaattaactgtcggcgaaggtaaggtgatgactcatgatgaaccctgtgctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCTTCGTCCGGAGAATCAATTGCGCTATCGCGATtata                                                                                                                                                            >  2:114290‑M1/164‑251 (MQ=255)                                                                                                aTTGGGGTCGTCTCCACAAACCAGAGTCCAGCCAAGGGAAATTGAAACGAAAGTATGGGATTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTGACTGTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATTCTGTGCTTCACAATGAACTTGCTCAGAGTCCATCATGAGCAAGTAAAAGAATTTTTCGACATCCGGTGAATCAATTGAGATATCTCGATTATAAATAAAAc                                                                                                                                                    >  2:227954/1‑251 (MQ=255)                                                                                                aTTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTCTCGCGATTATAA‑TAAAAcc                                                                                                                                                   >  1:23535/1‑251 (MQ=255)                                                                                                   gggggCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTATGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTAAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCca                                                                                                                                                 >  2:118802/1‑250 (MQ=255)                                                                                                                             tggtctgacggctcttaccgctgaattcactgtcggcgaaggtaaggtgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGTTCAGCGGCCAGCTTCAGCCAGTAAAAGGCttt                                                                                                                                                                                                   >  2:46973‑M1/127‑175 (MQ=255)                                                                                                                             tggtctgacggcgcttaccgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCttt                                                                                                                                                                                                   <  1:46973‑M1/49‑1 (MQ=255)                                                                                                                                 aaGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCaa                                                                                                                                                                               <  1:251449/191‑1 (MQ=255)                                                                                                                                 aaGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCaa                                                                                                                                                                               >  2:251449/1‑191 (MQ=255)                                                                                                                                                      aTGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCt                                                                                                                                 <  1:202340/215‑1 (MQ=255)                                                                                                                                                      aTGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCt                                                                                                                                 >  2:202340/1‑215 (MQ=255)                                                                                                                                                              gTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGGCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCATCAata                                                                                                                                           <  1:245634/197‑1 (MQ=255)                                                                                                                                                                              cAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCTCGCAATCGCCTTTTTCAGCACGTTCGATAATCTCATCTATTGATAAATTATCgcagcacc                                                                     >  2:8804/1‑249 (MQ=255)                                                                                                                                                                                        aTGGCTTGCTCATTATCGTTATGACGGCTTTTATCCTCGGAATACTTTTGCACTAAGGAATACTGTGCTTCCCAATGACCTTGCTCAGCGGCCAGCTTCAGCACGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAAGTGAGCTCTCGCTCTTATAA‑TAAAACCCACAAATACATTGAGCCTCGACATAGCCTTTTTCAGCACGTTCGCTAATCTCATCTATTGATAAATTATCGCAGCaaattacagtga                                                            >  2:150668/1‑240 (MQ=255)                                                                                                                                                                                                 tCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATCCTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAACGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCATCGCAATCGCCTTTTTCAGCACGTTCGATAATCTCATCTATTGATAAATTATCGCATCAACTTGATGTGaaactatttat                                                  >  2:168213/1‑243 (MQ=255)                                                                                                                                                                                                            aTGACGGCTTTTAGCCACGGTATACTATTGCCCTAATGAACACGGTGCGTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCTCGCAATCGCCTTTTTCAGCACGTTCGATAATCTCATCTATTGATAAATTATCGCAGCAACTTGACGTGAAAATCATTATCATTTCCTTAt                                       <  2:82954/251‑1 (MQ=255)                                                                                                                                                                                                                   ctattATCCTCGGTATACTTTTGCCTTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGGAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATCA‑TAAAACCCAACAATATATTGAGCCTCGCAATCGCCTTTTTCAGCACGTTCGTTAATCTCTTCTATTGCTAAATTATCGCAGCCACTTGACGTGACACTCATTATCATTGCCTTTTGGTTGc                                 >  2:86252/4‑250 (MQ=255)                                                                                                                                                                                                                   acaaacatgatctcatatcagggacttgttcgcaccttccCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCTCGCAATCGCCTTTTTCAGCACGTTCGATAATCTCATCTATTGATAAATTATCGCAGCAACTTGACGTGAAAATCATTATCATTTCCTTATGGTTGc                                 <  1:30250‑M1/210‑1 (MQ=255)                                                                                                                                                                                                                                                  aaTACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCTCGCAATCGCCTTTTTCAGCACGTTCGATAATCTCATCTATTGATACATTATCGCAGCAACTTGACGTGAAAATCATTATCATTTCCTTATGGTTGCAGATAAAACCTATTATATTTTTATGTGTTcc  >  2:141948/1‑250 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                  CCGTTGCCATTTCTGTACATCCACCCAAGATTATTTTGCGCATAAGACATTCCGCTCTCCGCGGCTATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAA‑TAAAACCCAACAATATATTGAGCCTCGCAATCGCCTTTTTCAGCACGTTCGATAATCTCATCTATTGATAAATTATCGCAGCAACTTGACGTGAAAATCATTATCATTTCCTTATGGTTGCAGATAAAACATATTATATTTTTATGTGTTCC  >  NC_000913/676108‑676598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.