| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,682,459 | A→G | K101E (AAA→GAA) | rstA → | DNA‑binding transcriptional regulator RstA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,682,459 | 0 | A | G | 91.3% | 52.6 / ‑1.2 | 23 | K101E (AAA→GAA) | rstA | DNA‑binding transcriptional regulator RstA |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (11/10); total (12/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.97e-01 | |||||||||||
ATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGACAGCTGATTTCGAATTATTGTGGGAATTAGCTACCCATGCCGGGCAAATCATG > NC_000913/1682232‑1682701 | atatGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAATAAACCATTTTGCGAGAAAATCCGGATTTGGTGATAATCGACATCATGCTACCAGGCAAGGACGTCATGACCATTTGTCGTGATTTACGCGCAACGTGGTCTGGGCCGATTGTTCTTCTAACCTCTCTCGACAGCGATCTGAACCACATCCTGGCCCTGGACATGGGTGCCTGCGACTATATTCTCGACACGACGCCCCCTCCTGttttt > 2:71557/1‑250 (MQ=255) aCCGTCGAGACGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAAAAAATCCGGAATTGGCGTTACTCGACATCCTGCTAACAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGAGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATCGCGATATGAACAACATCCTGGCACTGGAAATGGGGGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGAGCGttt > 2:6477/1‑251 (MQ=255) gCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGc < 1:151748/251‑1 (MQ=255) aGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAAt > 1:21488/1‑251 (MQ=255) cGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGc < 1:143522/251‑1 (MQ=255) acaaTTTTGCGAGAAAATCCGGATTTGGCGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACAGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGTAGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTAGAATTTGCGTCAGAATGAGCAAGCcac > 2:203137/4‑251 (MQ=255) aaaTCCGGATTTGGTGTTATGCGACATCATGCTACCAGGCAAGGCCGGAATGACCATTTTTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTc < 2:245443/251‑1 (MQ=255) gtggtACTCGACATCATGCTACCAGGCAAGGACGCCATGACCATTTGTCGTGATTTACGCGCACAGTGGTCTGGACCGATTGGTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCAGGCACTGGAAATGGGTGCCTGCGACTATATTTCCGAAACGACGACCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCGGCCTTAGCTAGCCACACTGACCAAAGGTCTTACGGAAACGtt > 2:83346/5‑250 (MQ=255) acatcatggcaacAGGAAAGGACGGCAGGACCATTTGTCGTGAATTACGCGCAAAGTGGTCTGGACCGATTGTTCTTATAACCTCTCACGATAGCGATATGAACCACATCCTGGCACTGGAAAGGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTccc < 2:21488/239‑1 (MQ=255) aCATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTccc > 1:90540/1‑251 (MQ=255) gCTACCAGGGAATGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTGCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGCCGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAg < 2:137557/251‑1 (MQ=255) gCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTAAGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACaa > 1:71586/1‑249 (MQ=255) aGGCAAGGCCGGCATGACCATTTGTCGTGATTTACGCGCCAAGAGGTCTGGACCGATTGTTCTTCTAAACTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTCTATTCTAGAAAAGACGACCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAGGTTCTTCAGGAATCGTCTATGCCTCGCTACAACGCCCTGc > 2:294518/1‑251 (MQ=255) gcaatgccGGCATGACCATTTTGCGGGATGTACGCGCAAAGGGGTCTGGACCGATTGTACTTCTAACCTCTCGCGAGAGCGATATGGACCACATCCTGGCCCTGGAAATGGGTGCCTGCGACTATATTCGCGAAACGACGCCCCCTTCGGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGGGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCGCTGACTCCCGACAAAGCCCTGCAt < 2:137842/244‑1 (MQ=255) gCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAACGCCCTGCAt > 2:79061/1‑251 (MQ=255) gTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATccc > 1:262248/1‑251 (MQ=255) atatGACCCAAAACCTGGCACTGGAAATGGGTGCCTGCTACTATACTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCGCGCTCCCGACAGCTGAt < 2:217315/248‑1 (MQ=255) atatGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGACAGCTGAt > 1:217315/1‑248 (MQ=255) acaTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGACAGCTGATTTCGAATTATtg < 1:27226/251‑1 (MQ=255) ccTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGACAGCTGATTTCGAATTATTGTggg < 1:15887/251‑1 (MQ=255) aCTATATTCTCGACACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGCCAGCTGATTTCGAATTATTGTGGGAATTAGCTCCCCATGCCGGGCAAATc > 2:149271/1‑251 (MQ=255) aCTATATTCTCGAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGACAGCTGATTTCGAATTATTGTGGGAATTAGCTACCCATGCCGGGCAAATc < 1:149271/251‑1 (MQ=255) atagtctcGAAACCACGCCCCCTGCTGTTTTGCTATCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGGCCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCAGCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGACAGCTGATTTCGAATTATTGTGGGAATTAGCTACCCATGCCGGGCAAATCATg < 1:273465/247‑1 (MQ=255) | ATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTACAAAGCCCTGCATTTCGGCACGTTGACCATCGATCCCATCAACCGCGTAGTCACCCTGGCTAACACTGAAATCTCGCTCTCGACAGCTGATTTCGAATTATTGTGGGAATTAGCTACCCATGCCGGGCAAATCATG > NC_000913/1682232‑1682701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |