| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,439,485 | C→T | E9K (GAG→AAG) | yhdN ← | DUF1992 domain‑containing protein YhdN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,439,485 | 0 | C | T | 92.9% | 36.6 / ‑3.6 | 14 | E9K (GAG→AAG) | yhdN | DUF1992 domain‑containing protein YhdN |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (5/8); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.95e-01 | |||||||||||
GATCATCGTGACGGATACCTTTGAGAATATCCAGAAGCTGAATTGCTTCTCTCCGTTGCTCAAGTTCTGGCGGTAAGCAACCGGCATTCTTCAGCAAGCGATACCCCGCACGTAATTCCGGTGGCACGTGAGAATCATCATCCAGTATCAATGGTTCGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTCTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTT‑ACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTCGCCTGCACGGAAGCCACACTTCAGAATACGAGTGTAACCAC > NC_000913/3439269‑3439725 | gATCATCGTGACGGATCCCTTTGAGAATATCCAGAAGCTGAATTGCGTCTCTCCGTTGCTCAAGTTCTGGCGGTAAGCAACCGGCATTCTTCAGCAAGCGATACCCCGCACGTAATTCCGGTGGCACGTGAGAATCATCATCCAGTATCAATGGTTTGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCTCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCa < 2:145770/251‑1 (MQ=255) gagaAGATCCAGAAGCTGAATTGCTTCTCTCCGTTGCTCAAGTTCTGGCGGTAAGCAACCGGCATTCTTCAGCAAGCGATACCCCGCACGTAATTCCGGTGGCACGTGAGAATCATCATCCAGTATCAATGGTTCGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACa < 1:136175/251‑1 (MQ=255) cAGAAGCTGAATTGCTTCTCTCCGTTGCTCAAGTTCTGGCGGTAAGCAACCGGCATTCTTCAGCAAGCGATCCCCCGCACGTAATTCCGGTGGCACGTGAGAATCATCATCCAGTATCAATGGTTCGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTa < 2:48766/251‑1 (MQ=255) ctcCGTTGCTCAAGTTCTGGCGGTAAGCAACCGGCAGTCTTCAGCAAGCGATACCCCTCACGTAATTCCGGTGGCACGTGAGAATCATCATCCAGTATCAAGGTTTCGTCGCTACCTGCCAGGTGATCAAACTCACCTTTCGCTCGCGCTTCTGCTATATGGCGCGTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATGGTAGATAAGTGGTGAtact < 2:37956/248‑1 (MQ=255) ctcCGTTGCCCAAGTTCGGGAGGTAAGCAACCGGCATTCTTCAGCAAGCGATACCCCGCACTTATTTCCGGTGGCACGTGAGAATCATCATCCAGTATCAATGGTTCGCCGCTTCCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGAtacta < 2:230507/249‑1 (MQ=255) aCCGGCATTCTTCAGCAAGCGATACCCCGCACGTAATTCCGGTGGCACGTGAGAATCATCATCCAGTATCAATGGTTCGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTCCAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGttt > 2:210719/1‑251 (MQ=255) ggTTCGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTCTGCCCACTGGTCAAGCAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTTACGTTTCTTCAGAATACTATGCAGCAGCTTCTGCTTTCTCTTAACGATCAACCAGCTCGATGTACGcc > 1:125722/1‑251 (MQ=255) gTTCGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGGTTTTTT‑ACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGCTCAACCCGCTCGATGTAAGccct > 2:293889/1‑249 (MQ=255) cgccgcTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTT‑ACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCgg < 1:293889/251‑1 (MQ=255) cgacgcTACCTGCCAGGTTATCAAACTCACCTTTCTCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTT‑ACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCg < 1:164461/247‑1 (MQ=255) aGGTTATCAACCTCACCTTGCGCTTCCGCTTCTGCTATATGGCGCTTTTCCCACTGGTCAAGTA‑CCACCAAAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTT‑ACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTCGCCTg < 1:236726/251‑1 (MQ=255) ttATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTT‑ACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAACTCGATGTAAGCCATCGGCGCGTTGTCGCCTGCAc > 1:224680/1‑251 (MQ=255) tcaacTTTCGCTAGAGCTTCTGCTATATAGCGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATCAGAGGGGATACTACGGGTATAAAAAAAACCGCCGGGGCGGGGTTTTTT‑ACGTTGCTTCAGATTACACCGCCGCAGCTTCTGATTTCTCTGAACGGTCAAACCGCTCGATGTAAGACATAGACGCGTTGttccctaccagcaaaccac > 2:284923/5‑233 (MQ=255) atatGGAGCTTTGCCCACTGGTCAAGTAACCAC‑ATAAATACTAAAGGGGATGAACAAAAAGAGTACAACTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTGTTTTT‑TCGTTGCGTCAGAATACGCTGCAACAGCTTCGGCTTTCTCTGAACGATCAACCAGCTCGCTGTAAACCATCTGCGCGTTTTCGCCGTCACGGCAACCAGACTTCAGAATACGAGGGTAaccac > 1:68219/1‑251 (MQ=255) | GATCATCGTGACGGATACCTTTGAGAATATCCAGAAGCTGAATTGCTTCTCTCCGTTGCTCAAGTTCTGGCGGTAAGCAACCGGCATTCTTCAGCAAGCGATACCCCGCACGTAATTCCGGTGGCACGTGAGAATCATCATCCAGTATCAATGGTTCGCCGCTACCTGCCAGGTTATCAAACTCACCTTTCGCTTGCGCTTCTGCTATATGGCGCTCTGCCCACTGGTCAAGTAACCAC‑ATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTT‑ACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTCGCCTGCACGGAAGCCACACTTCAGAATACGAGTGTAACCAC > NC_000913/3439269‑3439725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |