| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,489,016 | C→T | E350K (GAA→AAA) | yjgR ← | DUF853 domain‑containing protein YjgR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,489,016 | 0 | C | T | 96.3% | 79.1 / NA | 27 | E350K (GAA→AAA) | yjgR | DUF853 domain‑containing protein YjgR |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (13/13); total (13/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGATTCCCGGTCCACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGAACCAGACGCCCACGCCTTTTGAGCGAATAAGCCTTATCACCTGCTCAATCTTATCCAGCAGTACCT > NC_000913/4488773‑4489234 | gctCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGATTCCCGGTCCACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCCCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATc > 2:138817/1‑250 (MQ=255) gAAAGCCTTTTTGCAACATCTCATAGGCGGATTCCCGGTCCCCCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGcc < 1:225702/251‑1 (MQ=255) ttttGCAACATCTCATAGGCGGATTCCCGGTCCACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATgg < 1:294778/250‑1 (MQ=255) tGCAACATCTCATAGGCGGATTCCCGGTCCACCTCACCCTCATATTTGCCATACACCGTGGAGTGATGAATCAAGCCATTACGCTCATCTTCCGCCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCTCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTGCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGttt < 1:265663/250‑1 (MQ=255) ggCGGATTCCCGGTCCACCTCATCCTCATATGTGCCAAACCCCGGAGAGTGATTAAACAAGCCATTACGCTCACCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCa < 2:71735/251‑1 (MQ=255) cGGATTCCCGGACCACCTCATCATAATATTTGCCATACACCGGAGAGTGAGTAATCACGACATTACGCTCATCTTCCGTCACCGGCCCCATCCACGAACACAGCGCGCTCACCATCACACGCTCCACCACAGAAGGGATTCCTTTCGCATCCAGGAAATAGTTAAACGACTCGCAGGTGCACAGTTCCTGAATCGCCTCTTTGGTATCAAACGCCGGATTGGCCCGAATGGATTGCGCAGCTGCCTTCAc > 2:184774/1‑250 (MQ=255) ggtttCCCGGCCCACCCCATCCTCATAGTCGCCAAACCCCGTAGAGTGATTAATCAAGCCATTACGCTCATCTCCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTg < 2:77158/248‑1 (MQ=255) gATTCCCGGTCCACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGc < 1:138817/251‑1 (MQ=255) aCCTCATCCTCATATTTGCCATACACCGGAGAGAGATTAATCAAGCCATTACGCCCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGCTCACCATCGCACGCTCCACCACAGCAGGGATTCCTTTCGCATCCAGAAAAGAGATCCACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCttt > 1:274308/1‑251 (MQ=255) tGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAAGCGCGATCACCATCGCAAGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCAGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCACAAAGCATGTTGAAcgcg > 1:188083/1‑251 (MQ=255) aTCAAGCCACTCCACTCATCTTCCGTCACCGGCCCACTCCTCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGACATCATCGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAAAGCGATTAcc < 2:19625/251‑1 (MQ=255) ccGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCGCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATcc < 1:10916/251‑1 (MQ=255) gTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCCAAGCATGTTGAACGCGATTACCGGGCTGCCCGAGCACATTATCCgg > 2:214611/1‑251 (MQ=255) cccGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAat < 1:217812/250‑1 (MQ=255) cccATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATc > 1:234033/1‑248 (MQ=255) cgagAACAAGGCGCGATCACCATCTCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGCATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCCTGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAACGCCCGCAAAGCATGTTGAACGCGATTACCGCGCTGCCCGAGCACATTATCCGGAATATCAGACGGGtt > 2:218757/4‑251 (MQ=255) gAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACCTTATCCGGAATATCAGACGGGTTTTg > 1:202688/1‑251 (MQ=255) aaCAAGGCGTGAGCACCATCGCACTCTCCACCACAGAAGGGCTTACTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAAGCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGc < 2:97511/251‑1 (MQ=255) gcgATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGa > 1:253731/1‑250 (MQ=255) cgATCACCATCGCCCGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGATATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCTGCATGGTTTGCGCCGCTGCGTTCACTGCTTTCTGATCTTTTTGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGAAc < 1:125227/251‑1 (MQ=255) cACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGAACCAGa < 2:295078/251‑1 (MQ=255) cGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGAACCAGACGCCCACGcc > 1:171884/1‑251 (MQ=255) cccacAGAAGGGCTTCCTGTCGCATCCAGAAAAGAGATCACCGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGGTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGAACCAGACGCCCACGCCTTTTGa < 2:222630/250‑1 (MQ=255) aGAATGGCTTTCTTTCGAATTCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAAGCGCCTTTTTGGTAACAAACGCCGGTTTTGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAACGCCCGCAAAGCAGGTTTAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTACGAAACGAACCAGACTCCCACGCCTTTTGAGTGaa < 2:253952/251‑1 (MQ=255) cTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGAACCAGACGCCCACGCCTTTTGAGCGAATAAGCCt > 1:70055/1‑251 (MQ=255) gcAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGAAAAAGCCCGCAAAGCATGTTTAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGACACGAACCAGACGCCCACGCCTTTTGAGCGAATCAGCCTTATCACCTGCTCACTCTTATCcagc > 2:231506/2‑251 (MQ=255) cTCGCCGGTGCCCAGTTACTGAATCGCCTTTTTGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCAGGAATATCAGACGGGTTTTGCGAAACGCACCAGACGCACACGCATTTTGAGCGAATAAGCCTTATCACCTGCTCAATCTTCTCcagcagaaact > 2:282855/1‑246 (MQ=255) | GCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGATTCCCGGTCCACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGCATGTTGAACGCGATTACCGAGCTGCCCGAGCACATTATCCGGAATATCAGACGGGTTTTGCGAAACGAACCAGACGCCCACGCCTTTTGAGCGAATAAGCCTTATCACCTGCTCAATCTTATCCAGCAGTACCT > NC_000913/4488773‑4489234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |