| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,388,041 | 0 | T | G | 88.9% | 52.0 / ‑2.5 | 27 | T50P (ACG→CCG) | aaeB | aromatic carboxylic acid efflux pump subunit AaeB |
| Reads supporting (aligned to +/- strand): ref base T (2/1); new base G (10/14); total (12/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
CGGTATAACCGGCCAGCCCCCACGCATACGAGTTTTCTATTCGTA‑CCAGCGAGGATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGAATAT‑GTTGGTTAGCAATGGAGAAAATACCCATCGTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTGCCAGTGACCACCA > NC_000913/3387807‑3388279 | cgttataACCGGCCAGCCCCCCCGCATACGAGTTTTCTATTCGTA‑CCAGCGAGGATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGACCATCGCAATGATGATCACCAGGCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATc < 1:149666/248‑1 (MQ=255) cGGCCAGCCCCCCCGCATACTATTTTTCT‑TTTGTATCCAGAAAGGTAAACCAGGGAAAAAACCCGGCCCAGATCCAGCACACCAGAACCATCAATAATGGTCCGCGGATCTTCGCAAGGATGATCTCCAGTCCGGCAGTCCAGCCAATAAAGGGGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTc < 2:166814/251‑1 (MQ=255) aGCCCCCACGCATACGAGTTTTCTATTCGTA‑CCAGCGAGGCTATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGTCGGCAACACTCGACGCTGTCAATAc > 2:66324/1‑251 (MQ=255) caaaCGAGGTTTCTATTCGTA‑CCAGCGAGGATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAAGAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGTTGTCAGTACCGCCCAGCgc < 2:217572/248‑2 (MQ=255) cATACGAGTTTTCTATTCGTA‑CCAGCGAGGATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCgg > 1:252649/1‑250 (MQ=255) cATACGAGTTTTCTATTCGTA‑CCAGCGAGGATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGGCAGTACCGCCCAGCGt < 1:204447/251‑1 (MQ=255) cGAGCTTTCTATTCGTA‑CCAGCGAGGATATCCAGGTACAAAACCCGGCCCAGAGACAGCACCCCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCATTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCg < 2:147548/251‑1 (MQ=255) gTTTTCTATTCGTA‑CCAGCGAGTATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATAACTAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTTCCGTTGATGAGCAAAAAGCCACGATAGCGCATAGCGCCAGAATACGGTTAACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACACTCGCCGCTGGCAGTACCGCCCAGCGAGGCGttt > 2:274186/1‑251 (MQ=255) tcttcccagatagtctcaccAGGTAAACAACCCGGCCCAGGTCCAGCACGCCAGAATCATCAATAATGGTCCCCGTATCATCGCATTGATGATCCCCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGAGAGCGAATGGCGCCAGAATACGGTTCTCCTCCCGCATCATAGGCCGGACCGTCGGCACCAATCGCCGCTGTCAGTACCGTCCAGCGTTGCGTTTCCAGCt < 2:155473/230‑1 (MQ=255) gAGGATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGcc > 1:192640/1‑251 (MQ=255) cccAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCg > 1:291362/1‑251 (MQ=255) acacCAGAAAAATCAATAATGGTGCGCGGCTCATAGCAATGATGATCACCAGTCCGCCAATACATCAAATAAATGTGCCGATGATGAGCAAAAAGCCACGATAGCGCATAACGCCAGACTACGGTTCACCTCCCGCAGCAACGACCGGCACGGCGGCAACCATCGCCGCTGGCAGTACCGCCCAGCGTGGCGTTTCCAGCTGAAAGTGCAAGCCATCCAACAGTGcccgaccactgccggcggcacgtttt > 2:203776/1‑227 (MQ=255) aaataagGGTGCGCGGTTCATCGAAATGATGTGCACCAGGCCGGAAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGaa < 2:37127/250‑1 (MQ=255) taatGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGGTTTACCGCAAAGAGAatat > 1:269992/1‑251 (MQ=255) cgcgGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CCGTTTTACCGCCAAGCGAAAAT‑GTTGGtt > 1:222343/1‑250 (MQ=255) gcgGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGAATAT‑GTTGGTTAg < 1:213026/251‑1 (MQ=255) atcatcGCAATGATGATCACCAGTCCGGCAATAAAGCCAATAAATGTGCCGAGGAGGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCCCCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGGCGCTGGCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGGGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGAATAT‑GTTGGTTAGCAAt < 1:155558/251‑1 (MQ=255) ccaatgatgaaatccatcccgtcAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATCCGGTTCGCCTCCCGCAGCAAAGGCCGGATCGGCGGCATCAATCGCCGCTGTCAGTATCGTCCAGCGTGGCGTTTCCAGCTGGAATTGAAAGCCAGCAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACTGCAAAGCGAATAT‑GTTGGTTAGCAATGTAGaa < 2:29886/229‑1 (MQ=255) ccGGCAAAACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGGTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCTGTCGC‑CAGTTTGACCGCAAAGCGAATAT‑GTTGGTTAGCAATGGAGAAAATACCCATCGTGATTaa < 2:192640/251‑1 (MQ=255) atcaaaatccAGCCAATAAATGGGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGAATAT‑GTTGGTTAGCAATGGAGAAAATACCCATCGTGATTaa < 2:225192/242‑1 (MQ=255) cAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAACGCATAT‑GTTGGTTAGCAATGGAGAAAATACCCCTCGTGGTTaa > 1:225192/1‑247 (MQ=255) aTAAATGGGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGAATAT‑GTTGGTTAGCaa < 2:179059/211‑1 (MQ=255) ggatgctGCGCAAAAAGCCACTATAGCTAATAGCGCCAGAACACGGTTCACGTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCCGTCAGTACCTCCCAGCGTGGCGTTTCCAGCTTGAAGTGAAAGCCAACAAACAGCGCCAGTACAAGGGCGGTCGC‑CAGTTTTACCGCATAGCGAATAT‑GTTGGTTAGCAATGGAGAAAATACCCGTCGTGATTAACCAAATTCACGCATGCGATGGGCCa < 2:193866/250‑1 (MQ=255) ccggtagctgaTAGCTCCAGAATATGTTTCCCCTCCCGCAGCAAAGTCCGGCCTGGCGGCAACAATCGCCGTTGTCAGTACCGCCCATCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTTGC‑CAGTTTTACCTCAAAGCGAATAT‑GTTGGTTAGCAATGGAGAAAATACCCATCTTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATc < 2:268027/241‑1 (MQ=255) aGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAACGCCAACAAACAGCGACAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGGATAT‑GTTGGTTAGCAATGGAGAAAATACCCATCGTGATTAACCAAACTCACGCAGGCGGTGGGCCATTTTACGGAAGAACGAATCCTggg > 1:178548/1‑250 (MQ=255) gAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCACGGTTTT‑TCGCAAAACGAATATTGTTG‑TTAAGAAAGGGGAAAATACACCTCCTGCATAAACAAACACACGCACGCGATGGGCCATTTTTCGGAAGACCGagtaccggagtt > 2:234590/1‑240 (MQ=255) cagcaAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCAGTCGC‑CAGTTTTACCGCAAAGCGAATAT‑GTTGGTTAGCAATGGAGAAGATACCCATCTTGATTAACCAAACTCACGCAGGCGATGGGCCCTTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTTCCAGTGaccaccc > 2:74681/1‑250 (MQ=255) | CGGTATAACCGGCCAGCCCCCACGCATACGAGTTTTCTATTCGTA‑CCAGCGAGGATATCCAGGTACAAAAACCGGCCCAGATACAGCACACCAGAATCATCAATAATGGTGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGC‑CAGTTTTACCGCAAAGCGAATAT‑GTTGGTTAGCAATGGAGAAAATACCCATCGTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTGCCAGTGACCACCA > NC_000913/3387807‑3388279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |