| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,748,841 | C→T | R240K (AGA→AAA) | ydhT ← | uncharacterized protein YdhT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,748,841 | 0 | C | T | 85.7% | 45.4 / ‑1.0 | 21 | R240K (AGA→AAA) | ydhT | uncharacterized protein YdhT |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base T (10/8); total (11/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
TTCGTTCAGGGACTTACGGCATGTGCAGAAATTGGTGAGGCGATGGCTCGGGCGGTCGTAAAGCCTGCATCCCGTGCTCGTCGGCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGTACTCGCATTCCGGTATTCGCAATCCGAC > NC_000913/1748634‑1749087 | ttCGTTCAGGGACTTACGGCATGTGCAGAAATTGGTGAGGCGATGGCTCGGGCGGTCGTAAAGCCTGCATCCCGTGCTCGTCGGCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGcc < 1:117748/250‑1 (MQ=255) tGAGGCGATGGCTCGGGCGGTCGTAAAGCCCGCATCCCGTGCTCGTCGGCGTCTTTCGTTTGATTAAAGCAAAAGCTCTCAGCACTCAACAACCTGATGCTGGTCATTAAAACGGTAGCGGACTACGGCTCGTATATTGATTTTGCCTTCAATGACCACGGCGACGCGAACTTTTTCCCCGTCATGAGAGACCAGTGCGGCGCTTCGTCCTGGTCCGATCATAATTGCGTCGGCCACGACCGTGCTCACt > 2:233834/1‑250 (MQ=255) gTCGTAAAGCCTGCATCCCGTGCTCGTCGGCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCAATACCGTTGAATTTTCACCGCt > 1:210083/1‑251 (MQ=255) gTCGTAAAGCCTGCATCCCGTGCTCGTAGGCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTAATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCt > 1:107115/1‑251 (MQ=255) cGTAAAGCCTGCATCCCGTGCTCGTCGGCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATTGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTg < 1:124480/250‑1 (MQ=255) cTGCATCCCGTGCTCGTCGGCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGAGCTCACTACCGTTGAATTTTCACCGCTGGCAatgatg > 1:92891/1‑251 (MQ=255) atcctgcctttttggcttCTTTCGTTTGAATTAAGGTAAAGTTATCTGTACTCAATAAACTGATTTGGTTCATTATGCCGATAGCCTACTCCTGCTCTAATATTGTTTTCTCCTTCAATGGCGACGGCTCAGCGAACGCTTTCGCCGTCATGCTATGCCAGTGCTGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCTTGCTCACTACCGTTGAATTTTCCCCTCTGGCAatgaggtttac < 2:264589/234‑8 (MQ=255) gtcGTCTTGCGTTGGATTAAATGTAAAACTATCATCACTCAACAATCTGTTGCGTTTCATTAAGACGAGAGCGGACTCCGGCTCGAATAATTTTTTCACCGGCAATATCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGGGCGGCGCTTCCTCCTTGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGTAATGCTGTGTACATTGTCGCCTCTg < 2:207717/249‑1 (MQ=255) ggCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTTTCGCCGCTg > 2:6748/1‑251 (MQ=255) tAAAGCTATCAGCAATCAACAAACTGAAGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACATTCAATGTCGACGGCGAAGCGAACTTTTTCGCCGTCATGAAATGCCAGCGCGGCGCTTACTCCGGGCCCGAGCATAATTGAGTCAACCAAGCCCGTGCTCACTACCGTTGAATTTACACCGATGGCAATGCTGTGTACCTTGTCGCCGCTGTTGTCAATTCTGGCGTTCGCGcc > 2:285196/1‑251 (MQ=255) aaCTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCAcc > 1:42901/1‑249 (MQ=255) aCTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCACTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTCGCACCAgg > 1:152700/1‑251 (MQ=255) cTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGCATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGt > 1:260007/1‑251 (MQ=255) tcctttaGACTATAGCGGACTCCGGATCGAATAGTGTTTTCACCTTCAATGGCGACGGCGACTCGATCTTTTTCGCCGTCATGATATGCCAGTTCGGCGCTTCCTCCTGGCCCGAGAATAAGTGAGTCGACCACGCCCGTGCTCACTACCGTTGAAGTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCTCCATTAc < 2:263356/244‑1 (MQ=255) gacgacAGCGGACTCCGGCTCGAATATGTTTTTCACCTTCAATGGCGACTGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCTAGAATAATTGAGTCGTCCACGCCCGTGTTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTGTGCGCCAATGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACa < 2:207115/251‑1 (MQ=255) aGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGCACTTTTTCGCCGTCATAATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGGCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGt > 1:287061/1‑183 (MQ=255) atTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTTTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACCGGCGCCATAACACCGTTCACCCAATGTACac > 2:289757/1‑249 (MQ=255) cGGCGAAGCGAACTTTTTCGCCGACATGATATGCCAGTGCGGCGCTTCCTTCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGTACTCGCATTCCGGTAttt < 1:228213/251‑2 (MQ=255) ggCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGTACTCGCATTCCGGTATTCg < 1:51861/251‑1 (MQ=255) gcgaagcgaaCTTTTGCGCCGGCATGATATGCCAGTGCGGCGCTTACTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTTCTCACTTCCGTTGAATTTTCACCGCTGGCATGGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCTACAGGACACCGTTCACCCAATGTACAAACGCGTACTCGCATTCCTGTATTCGc < 2:259607/251‑1 (MQ=255) aaCTTTTTCGCCGTCAGTATATGACAGTGCGGCGTCTCCACCTGGCCCGAGAATAATTGAGTCGACCATGCCCGTGCTCACTACCGTGGAATTTTCACCGCTGTCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTGGCGCCCAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCGCCCAATTGACAAACGCGTCCTCGCTTTCCGGGATTCGCAATCCGAc < 2:264365/251‑1 (MQ=255) | TTCGTTCAGGGACTTACGGCATGTGCAGAAATTGGTGAGGCGATGGCTCGGGCGGTCGTAAAGCCTGCATCCCGTGCTCGTCGGCGTCTTTCGTTTGATTAAAGGTAAAGCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGCAATGATGTGTACATTGTCGCCGCTGTTGGCAATTCTGGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGTACTCGCATTCCGGTATTCGCAATCCGAC > NC_000913/1748634‑1749087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |