| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,052,885 | G→A | intergenic (+871/‑758) | yeeJ → / → shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,052,885 | 0 | G | A | 95.0% | 49.0 / ‑5.2 | 20 | intergenic (+871/‑758) | yeeJ/shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (12/7); total (12/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
AATCGATAATGAAAATGTACGTTCCTGCGAGCTACCTTCTAAATTGAACGCAATGTAAGATCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGTACATCCTCACTTAGTGGCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAGAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCTGCATAGTCATTGTGACTAATGTTAATTTAGTCTGTTCA > NC_000913/2052651‑2053101 | aaTCGATAATGAAAATGTACGTTCCTGCGAGCTCCCTTCTAAATTGACCGCACTGTAAGATCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGTACATCCTCACTTAGTGGCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTCCGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGtt > 1:135241/1‑250 (MQ=255) cgtgccTGCGAGGTATCTTATAAATTGAACGCAATGTAAGCTCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGAACACCCTCTCTTAGTGGCAATTCATATATTTGCCTTACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAGAAGCAATTCATGGTTATACCAACAACCTGAAAAt < 2:143545/246‑1 (MQ=255) tCCTGCGAGCTACCTTCTAAATTGAACGCAATGTAAGATCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGTACATCCTCACTTAGTGGCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCGTAAATGCCCATGTCATCAGTACGGGAGCCCGGGATTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGTAAATTCGt > 2:88456/1‑251 (MQ=255) cTGCGAGCTACCTTCTAAATTGAACGCAATGTAAGATCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGTACATCCTCACTTAGTGGCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGttt > 2:118084/1‑251 (MQ=255) gAACGCAATGTAAGATCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGTACATCCTCACTTAGTGGCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCCCGCATCATAACTGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAACGCAATTCATGGTTATACCAACACCCTGaaactt > 2:65815/1‑222 (MQ=255) gAACGCAATGTAAGATCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGTACATCCTCACTTAGGGGAAATTCAAATATTGGCCGGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAAtt < 1:65815/225‑1 (MQ=255) gCATTTCCTCGCGCACCTCATCGAGTAAATCCTCACTTAGTGGCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGATCttttt > 1:73922/1‑250 (MQ=255) gCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCtgt < 1:118084/251‑1 (MQ=255) aTTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAACCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAACTTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGCTCCGGCGTACCGTATTGCTGTGtt > 1:355/1‑251 (MQ=255) tGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTg > 1:40076/1‑251 (MQ=255) gACTGCGGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGTTAAAt < 1:4404/251‑1 (MQ=255) aaaCCCGCCTCACGCATCATAAATGCCCATGTCATAGGTAAGGGAGCCCGGAGTTTCTGATACATACTGGACGCGTTCTTGAACCAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAACATTAGTTTTTGATTTAACCTGACTGATAAATAAAATCGATTTCAGGTTCTTTTTACGAATCCCCTCAATGCAAAGATCCGGCGTAGCGTATTGTTGTGTTGTGTTATTTGCTAAATCatttatttt > 2:10633/1‑250 (MQ=255) atcatAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTTGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTg < 1:228672/251‑1 (MQ=255) aaaggCCCATGTCATTGGTACGGGAGCACGGAGTTTCTGTTCCATACTGGACGCGTGCTTGCACAAAGGGGAAAAGCAATTCACGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACAGCGTTTTCAGGTTCTTTTTACGCATCCCCCCAATGCAAAGATCCGGCGTACCGTATTGCTTTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCt < 1:245245/247‑1 (MQ=255) gCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCTGCAt < 1:9262/251‑1 (MQ=255) ccctggTCATAGGTACGGGAGCCCGGTGTTTTTGATTCATACTGGACGCGTTCTTTCACAAAGGGGAAAAGCAATTCATTGTTATACCAACATCCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCTGCATa < 2:41999/246‑1 (MQ=255) ccATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCTGCAt > 1:147573/1‑249 (MQ=255) gggAGCCAGGAGTTTCAGCTCCTTACTGGACGTCCGCTTGCTCAAAGGTGAAAAGCAATTCATGGTTATAACAACAAACTGAAAATTGGTTTTTGCTTTCACAGGACTGATAAATAACCTCGTTTTCAGGTTCTTTTTAAGAATCACCTCAATGCAAAGATAAAGAGTACTGTATTGTTTTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGCTCATGCATAGTCATtgtaattattg > 2:40784/1‑243 (MQ=255) ttCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGAACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCTGCATAGTCATTGTGACTAATGTTAATTTAGTCTg > 1:55978/1‑251 (MQ=255) aTCCATACTGGACGCGTTCTTGCACAAAGGGGAAAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCTGCATAGTCATTGTGACTAATGTTAATTTAGTCTGTTCa > 1:175456/1‑250 (MQ=255) | AATCGATAATGAAAATGTACGTTCCTGCGAGCTACCTTCTAAATTGAACGCAATGTAAGATCCTAACGATCGCATTTCCTCGCGCACCTCATCGAGTACATCCTCACTTAGTGGCAATTCATATATTGGCCTGACTGCTGGAAAACCCGCCTCACGCATCATAAATGCCCATGTCATAGGTACGGGAGCCCGGAGTTTCTGATCCATACTGGACGCGTTCTTGCACAAAGGGGAGAAGCAATTCATGGTTATACCAACAACCTGAAAATTCGTTTTTGCTTTCAACTGACTGATAAATAACATCGTTTTCAGGTTCTTTTTACGCATCCCCTCAATGCAAAGATCCGGCGTACCGTATTGCTGTGTTATGTTCTTTGCTAAATCTTTTATTTCTTTTAATGTTGCGTGATCCTGCATAGTCATTGTGACTAATGTTAATTTAGTCTGTTCA > NC_000913/2052651‑2053101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |