| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,331,890 | C→T | L463L (CTC→CTT) | proP → | osmolyte:H(+) symporter ProP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,331,890 | 0 | C | T | 95.0% | 44.1 / ‑3.7 | 20 | L463L (CTC→CTT) | proP | osmolyte:H(+) symporter ProP |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (5/14); total (6/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.18e-01 | |||||||||||
CGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATG > NC_000913/4331643‑4332134 | cGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCTTCAGATATACAGGAAGCGAAGGAAATTCttgtc < 1:253721/251‑1 (MQ=255) acggcgcgcTGGTGGCGGCATTTAATATTTCGGTGCTGGTTGCCTGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCTGCGTCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGTGCATTACGataa < 1:294150/247‑1 (MQ=255) aTTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCgatg < 1:287829/251‑1 (MQ=255) ttAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCgatga < 1:276728/250‑1 (MQ=255) gagaaggtgagtatgCCTGCCTATTACCGGAGGGTAGTGG‑GGTGGGTTGGTTTAATCACCGGTGTATCCATGAAAGAGAGGGCAAATCGTCCGTTGAAAGGGGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAAAAGCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAAt < 1:173280/239‑1 (MQ=255) tATTACCGGAGGGTAGTGGCGGGGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGTGACGGCAAACCGTCCGTGGAAAGGTGCGACACCGGCGGCTTCAGATAACCAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAACCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACg < 2:36308/249‑1 (MQ=255) gTAGTGGCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAtgtg < 1:93175/251‑1 (MQ=255) gCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTg < 1:31517/251‑1 (MQ=255) gttTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGCTATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGGTTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAgg > 2:139667/1‑251 (MQ=255) aTGAAAGAGCCGGAAAACCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATAAAGGAAGCGAAGGAAATTCTTGTCGAGAATTACGATAATATCGAGCAGAAAATCGATGATATTGACTACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACTGATGGCCTGATGTGACGCTGTCGTATCAGGCCAATTGAACTCTTAAGGtt < 1:234071/251‑1 (MQ=255) tGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGGAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTc > 1:147366/1‑251 (MQ=255) gTCCGTTGAAAGGTGCGACACCGGCGGAGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGACACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACgcgc > 2:216612/1‑251 (MQ=255) gcgaacccGGCGGGGTCAGAATTAAAGGAAGAGAAGGAAATTCTTGTGGAGCTTTACGATAATATCGAGCAGAAAAGCGATGATATTGACCTCGAGATTGCCGATGTGCAGGCGAAACGTACCCGCCGGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACGTAATCTCTGACGCGCATACTCTCCTCCa < 2:254499/244‑1 (MQ=255) cacCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt > 1:29951/1‑250 (MQ=255) cggcggCGTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACg < 1:256189/251‑1 (MQ=255) gggcgcagttataCAGGAAGCGAAGAAAATTCTTGTCGAGCAGTACGATAATATCTGGCAGAAAATCGATGATATGGACCACGAGATTTCCGTTTTGCAGGCTAAACTTACCCGCCTGGGGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTACCAGCCCAATTGAACTCTTAAGGTGTACTTAATCTCAGACGCGCATACTCTCCTCCAGGTGAACggagg < 2:296075/242‑1 (MQ=255) ggcgTCAGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGCCCACGAGATTGCCGATTTGCAGGCGAAACTTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg < 1:239187/251‑1 (MQ=255) aGATATACAGGAAGCGAAGGAAATTCTTGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTg > 2:255516/1‑251 (MQ=255) gatgCGAAGGAAATTCTTGTCGAGCATTACGTTAATTTCGAGAAGAAAATCGTTGATATTGCCCCCGAGATTGCCGATTTGCAGGCGAAACGTCCCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGTAGAGTGCAATGaaaaa < 1:242959/248‑1 (MQ=255) aagAAATTCTTGTCGAGCATTACGAAAATATCGAGCAGAAAATCGATGATATGGACCACGAGATGGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCGCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGtt < 2:124861/249‑1 (MQ=255) aaTTCTTGTCGAGCATTACGATAATATCGTGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACTGAGGAGAGTGCAATGAAAAACCGTGTTTATg > 2:48979/1‑251 (MQ=255) | CGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGG‑TTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATG > NC_000913/4331643‑4332134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |