| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,025,601 | (T)5→4 | coding (1251/1401 nt) | xanQ → | xanthine:H(+) symporter XanQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,025,601 | 0 | T | . | 95.7% | 86.4 / ‑1.1 | 23 | coding (1251/1401 nt) | xanQ | xanthine:H(+) symporter XanQ |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (10/12); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.76e-01 | |||||||||||
CACGTTATGTCGGGCGAACCATCGCGGTAATGCTGGTTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGATTAACAGTAAAGGAGT‑CAATGATG‑T‑CAGGAGAACACACGTTAAAAGCGGTACGAGGCAGTTTTATTGATGTCACCCGTACGATCGATAA > NC_000913/3025357‑3025836 | cACGTTATGTCGGGCGATCCATCGCGGTAATGCTGGTTATCCTCGGCTTATTTCCGATGATTGGCTGCTTCTTCACGACCATTCCCTCGGCAGTTCTGTGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAata < 1:212151/250‑1 (MQ=255) gTTATGGCGGGCGAACCATCGCGGTAATGCTGTGTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTGCCATGATTGCCAGCGCAGGTATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATGGTCGCCTCTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGc < 2:228646/251‑1 (MQ=255) gAACCATCGCGGTAATGCTGGTTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCATCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAAATTT‑AAAATATTGCCAGCCTCTAttt > 1:153184/1‑251 (MQ=255) ggTTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCATCTATTTATGTATTAGTTGAAAAccc > 2:223221/1‑251 (MQ=255) aTCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTAt < 1:229512/250‑1 (MQ=255) cccacggtgttttgcGATGATTGGTGGCTACTTCACGTCATTTTCCTCGGCAGGTCTTGGAGTCGCTATTACGTTGAAGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCTCCAACGGTTTAAAGCGCCTTGAAACGCTCATTGTCGCCACTTTTTTAGGTTTATGGCTTGGCGGCTCCTACGATCTCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTtg < 2:260167/237‑1 (MQ=255) aCCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCa < 2:211115/179‑1 (MQ=255) aCCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCa > 1:211115/1‑179 (MQ=255) aTTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAA‑TTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGGTTACTTCGGTTTTTTTAAatttttttctc > 1:39595/1‑242 (MQ=255) tCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTAtcctcc < 1:229914/250‑1 (MQ=255) tCTGGGAGGCGCAATGACGGTGATGTTTTCCATGATTGCCATCGCAGGGATGCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTAcc < 2:272906/250‑1 (MQ=255) ggtaGGCGCAATGACGTTGATGTTTACCATGATTGCCATCGCTGGGATTCGCATCATCATCGCCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTGTCCTACGATCCCGAAATTGT‑AAAATAGTGCCAGCCTCTATTTATGTATTAGTTTAAAACCCTATTTGTGCTGGCGGGTTATCTGCGATTTTATGAAATATTATCCTCCCTGGTGGCTACCGACa < 1:290501/248‑1 (MQ=255) tGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTTACTGGGGTTTTTTTTAATATTTTCCTCCCTGGTGGGTTCCGACTGGGAAACGTTCTGCCTg > 1:250273/1‑251 (MQ=255) gTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTttat < 2:112116/199‑1 (MQ=255) gTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAAATGCGGtttttt > 1:112116/1‑197 (MQ=255) gATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTACCTCAGc < 1:166236/251‑1 (MQ=255) ccATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTTTTAAATATTATCCTCCCTGGGGGCTACCGCCAGGAAAACGTTTTGCCTGGTATTACCTCAGCggg > 1:209684/1‑248 (MQ=255) gggATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCGCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGAt < 1:108845/251‑1 (MQ=255) aaCGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCTGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGATTAACAGTAAAGGAGT‑CAatga < 1:239796/251‑1 (MQ=255) cttcttTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGGTAACTGCGGATTTATTTAATATTATTCTCCCTGGGGGCTACCCAAAGGAAAAAGATCTGCCTGGTTTTACCTCCGCGGAAGAGATGGGATAAAAGGAAAGGAGT‑CA‑TTATGGT‑CAGGGAAACACACGTTAAAAggagtccgaggc > 1:48966/1‑238 (MQ=255) ttaggGCTTGGCGTCTCCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTTAATATTATTCTCCCTGGTGGCTACCGCCAGGAAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGATTAACAGTAAAGGAGTACAA‑GATG‑T‑CAGGAGAACACACGTTAAAAGCGGTACGAGGCAGttttttttatg > 1:102140/1‑244 (MQ=255) tcCTACGATCCCGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTTACTGCGATTTTATTAAATATTTTCCTCCCTGGGGGCTACCGACAGGAAAAAGGTCTGCCTGGTATTAACTCAGCGGGAGAGATGGATTAACAGTAAAGGAGT‑CAATGATG‑T‑CAGGGGAACACACGTTAAAAGCGGGACCAGGCAGTTTTTTTGATGTCACCCGGAcgctcg > 1:204933/1‑251 (MQ=255) cGATCCAGAAATTTT‑AAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTTACTGCGGTTTTATTTAATATTATACTCCCTGGGGGCTCCCGACAAGGAAACGGTCTGCCTGGGATTACCTCCGCGGAAGAGAAGGGTTAACAGGAAAGGAGT‑GAATGAAG‑TTCAG‑AGAAAACACGGTCAAAGCGGTAAGAGGGAGGTTTTTTGTTGTCACCCggaagatatggaa > 1:63108/1‑238 (MQ=255) | CACGTTATGTCGGGCGAACCATCGCGGTAATGCTGGTTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGATTAACAGTAAAGGAGT‑CAATGATG‑T‑CAGGAGAACACACGTTAAAAGCGGTACGAGGCAGTTTTATTGATGTCACCCGTACGATCGATAA > NC_000913/3025357‑3025836 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |