| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,555,047 | G→C | V655L (GTC→CTC) | malT → | DNA‑binding transcriptional activator MalT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,555,047 | 0 | G | C | 92.6% | 71.7 / 0.3 | 28 | V655L (GTC→CTC) | malT | DNA‑binding transcriptional activator MalT |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base C (13/12); total (15/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.88e-01 | |||||||||||
CGTGCGCAGCTGTTATGGGCCTGGGCGCGGCTGGATGAAGCCGAAGCGTCGGCGCGTAGCGGGATTGAAGTCTTGTCGTCTTATCAGCCACAGCAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAAGTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCGGCAGAAATTGTTCTCGAAGAACTCAATGAAAATGCCCGGAGTCTGCGGTTGATGAGCGATCTCAACCGTAACCTGTTGCT > NC_000913/3554810‑3555282 | cGTGCGCAGCTGTTATGGGCCTGGGCGCGGCTGGATGAAGCCGAAGCGTCGGCGCGTAGCGGGATTGAAGTCTTGTCGTCTTATCAGCCACAGCAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGAttt > 1:118691/1‑250 (MQ=255) tGCGCAGCTGTTATGGGCCTGGGCGCGGCTGGATGAAGCCGAAGCGTCGGCGCGTAGCGGGATTGAAGTCTTGTCGTCTTATCAGCCACAGCAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCATAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACt > 1:260115/1‑251 (MQ=255) gtGTTATGGTCCTGGGCGCGGCTGGATGAAGCCGAAGCGTCGGCGCGTAGCGGGATTGAAGTCTTGTCGTCTTATCAGCCACAGCAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAAt < 2:162331/250‑1 (MQ=255) tGGATGAAGCCGAAGCGTCGGCGCGTAGCGGGATTGAAGTCTTGTCGTCTTATCAGCCACAGCAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAACTATCACCGCGACTGGATCTCTAACGCCAACAAACTCCGGGAGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCt > 1:250823/1‑251 (MQ=255) acccagcctcgccaatctgTAGCGGGATTGCAGTTTTGTCGTCTTATCAGCCAAAGCAACAGCTTCATTGCATGGCAATGTGGATTCAAAGCTCGCTGGCCCGTGGTCACTTAGTTAACGCCCGGAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGC‑ATGGCAAACACCACAGCGACTGGATATCCAACGCTAACAAAATCCGGGTGATGTACTGGCAAACGCCCGGCGATAAACCCGCCGCTGCCAAc < 2:263/233‑1 (MQ=255) gTAGCGGGATTGAAGTCTTGTCGTCTTATCAGCCACAGCAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAAGTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAAc > 1:263/1‑233 (MQ=255) acaGCAACAGCTTCAGTGCCTGGCAATGTGTATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAg < 1:176666/251‑1 (MQ=255) aGCAACAGCTTCAGTGCCGGGCAATGTTGATTCAATGCTCGCTGGCCCGGGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGt < 1:26956/251‑1 (MQ=255) cAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTc > 1:138408/1‑250 (MQ=255) tCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAAAATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACGGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGgcg < 1:193407/249‑1 (MQ=255) gCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTAAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACAt < 1:264753/250‑1 (MQ=255) ttGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACAG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGCTAAAGCCGCCGCTGCCAACTGGTTGAGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCCAGGGCAATGGCGCAACATTGCCCGTGcac > 2:279603/1‑250 (MQ=255) gATTCAATGCTCGCTGGCCCGTGGTGAATTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGCTTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCCACATTGCCCGTGCACaa > 2:124365/1‑250 (MQ=255) cccaccccctcagtgccagatccgATAACGCCCGTAGCCAGCGGAACCG‑CCTGTAAAACCTGCGGGGGAGATG‑CAAAAATCAAAGCACCGGGATCTCTACCGCAAACAAACTCCTGGGGATTTACTGGCAATTTACCGGCGATAAATCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCACGGTCAATGGCGCAACATTGCCCGTGCACATATCTTGCtc < 2:10551/228‑2 (MQ=255) cGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTgg < 1:258619/249‑1 (MQ=255) aTTTAGCTAACACCCGAAGCCAGCTGAACCG‑TCTGGAAAAACTGCTGAGGA‑ATGGCAAATATAACAGAGACAGGATCTCTAACGCCAACAAACTCCGGGTGCTTTACTGGCAAATGACCGGCGATAAAGCCGACGCTGCGAACTGATTGCGTCATCAGGCTAAACCAAAGTTTTCGAACAACAAATTCATGCAAGGTCAAGGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCAAGTTGTAACCGGc > 2:286839/1‑250 (MQ=255) gATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGAAACATTGCCCGTGCACAAATCTTGCTg > 1:10551/1‑228 (MQ=255) aaTAACGCCCGGAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACGCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCGGCAGAAAt < 1:25561/250‑1 (MQ=255) ataaaccccGTAGCCAGCGGAACCGGTC‑GGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTTATTTACGGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCGGCAGAAAtt < 2:61363/245‑1 (MQ=255) cGTAGACAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGAATGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCCAGGTCAATGGCGCAACATTGCCCGTGCACAATTCTTGCTAGGCGAGTTTGAACCGGAAGAAATTGTTCTCg > 1:288464/1‑250 (MQ=255) tAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATaaa > 1:276328/1‑112 (MQ=255) tAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATaaa < 2:276328/112‑1 (MQ=255) aGCCAGTTGAACCT‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCAAACGCCAACAAACGCCGGGTGATTTACTGGCAAATGCCCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTTAACCGGCAGAAATTGTTCTCgaag < 1:262584/250‑1 (MQ=255) ccAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCGGCAGAAATTGTTCTCGAAGAAc > 1:14429/1‑251 (MQ=255) aCCG‑GCTGGAAAACCTGTGGGGGA‑ATGACAAAGTCCACAGGGACTGGACCTCAAACGCCAACAACCTCCGGTAGATTGAATGGTAAAGGACCGGCTATAAAGCCGACGCCGCCAACTTGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACGTTCTGCCAGGTCAATGGCGCAACATTTACCGTGCTCAAATCTTTCTGGGCGAGGTTGAACCGGCAGAAATTGTTCTCGAAGAACTCAATGaa < 2:98783/251‑1 (MQ=255) aaaCCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCTGCAGAAATTGTTCTCGTAGAACTCAATGAAAATGCCCgg > 1:160686/1‑250 (MQ=255) acaGCGACTGGATCTCTAACGCCAACAAAGTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCGGCAGAAATTGTTCTCGAAGAACTCAATGAAAATGCCCAGAGTCTGCGGTTGATGAGCGATCTCAAc > 1:195272/1‑251 (MQ=255) tctAACGCCAACAAACTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCGGCAGAAATTGTTCTCGAAGAACTCAATGAAAATGCCCGGAGTCTGCGGTTGATGAGCGATCTCAACCGTAACCTGTtgct > 1:211397/1‑251 (MQ=255) | CGTGCGCAGCTGTTATGGGCCTGGGCGCGGCTGGATGAAGCCGAAGCGTCGGCGCGTAGCGGGATTGAAGTCTTGTCGTCTTATCAGCCACAGCAACAGCTTCAGTGCCTGGCAATGTTGATTCAATGCTCGCTGGCCCGTGGTGATTTAGATAACGCCCGTAGCCAGCTGAACCG‑TCTGGAAAACCTGCTGGGGA‑ATGGCAAATATCACAGCGACTGGATCTCTAACGCCAACAAAGTCCGGGTGATTTACTGGCAAATGACCGGCGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAACCAGAGTTTGCGAACAACCACTTCCTGCAAGGTCAATGGCGCAACATTGCCCGTGCACAAATCTTGCTGGGCGAGTTTGAACCGGCAGAAATTGTTCTCGAAGAACTCAATGAAAATGCCCGGAGTCTGCGGTTGATGAGCGATCTCAACCGTAACCTGTTGCT > NC_000913/3554810‑3555282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |