New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4038293	NA (NA)	4 (0.160)	3/476	2.7	NA	noncoding (775/2905 nt)	rrlA	23S ribosomal RNA
	?	NC_000913	4038754 =	NA (NA)					noncoding (1236/2905 nt)	rrlA	23S ribosomal RNA

TCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCG  >  NC_000913/4038530‑4038969                                                                                                                                                                                                                                 |                                                                                                                                                                                                                        tCATGGGTAAGTGTGAAACTATGGGGGACGGCACCGACAGCCAGGATTGTGGCTTCGAAGAAGCCATCATTTACAGACAGCGTAATAGCTCCCTGGTCGAGTTGGCCTGCGCGTAAGATGTAACAGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTAAGTATTGTTGGGTAGGGAAGCGTTCTGTAAGCCTGTGAAGGTGTGGTGTTAATCATGCTGGATGTATCAGACGTGCGAATgatgtcat                                                                                                                                                                                               >  2:228759/1‑244 (MQ=2)                     aTGTGGGAATGCCCCGACCGCCAGGGTGATGGCTTAGAAGCAGCCCTCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCGGCGGCAGCGACACTATGTGTTGTTGGGGAGGGGGGCGTTCAGTAAGCCTGTGAAGGGGTGCTGTGCGGCATGCTGGAGGGAGCAGAAGTGCGAATGCTGACATTAGTACCGATAAAGCggggg                                                                                                                                                                           >  2:278737/1‑249 (MQ=11)                     aTGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg                                                                                                                                                                           <  2:73426/251‑1 (MQ=37)                           gAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaa                                                                                                                                                                        >  1:244685/1‑248 (MQ=38)                                 ccAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAt                                                                                                                                                                                                                    >  2:41635/1‑198 (MQ=39)                                 ccAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAt                                                                                                                                                                                                                    <  1:41635/198‑1 (MQ=39)                                           aGGATGTTGGCTTAGAAGCAGCCCTCATTTAAAGAAAGCGTAATAGCTCACTGGTCAAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCCGCGACACTATGTGATGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGACGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCGGACATAAGTAACGATAAAGCGGGAGCAAAGCCAGCTCGCCGGagga                                                                                                                                                      >  2:193664/1‑247 (MQ=11)                                            ggATGGTGGCTTAGAAGCATCCATCATGTAAATAAAGCGTAAGAGCTCACGTGTCCAGGCGGCCGGCGCGGAAGATGGAACGTGGCTAGCCCATGCACCGAAGCTTCGGCAGCGACGCTATGTGTTGGTGGCTAGGGAAGCGTGCTGTAAGCCTGTGCAGGTGTGCTTTGAGGCATGCTGTGGGTATCAGAAGTGCGAATGCTGACATAAGGAACGATAAAGCTGGTAAAATGCCCGTGCGCCGCAAGatc                                                                                                                                                    <  2:270054/251‑3 (MQ=2)                                                  tGGCTTAGAAGCATCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAggg                                                                                                                                               <  1:175158/250‑1 (MQ=38)                                                                  atcatTTAAAGATAGCGTAATAGCTCACTGGGCGAGTCGGGCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCTCTCGCCGGAAGACCAAGGGGTCCTGTCCAACGGTaa                                                                                                                              <  1:225441/251‑1 (MQ=255)                                                                                gCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa                                                                                                                <  1:130159/251‑1 (MQ=37)                                                                                                   gAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAAGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAgg                                                                                             >  1:199305/1‑251 (MQ=37)                                                                                                     gTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGcc                                                                                           <  1:36185/251‑1 (MQ=37)                                                                                                           cTGCGCGTAAGATGTAAAGGGGCTAAACCATGCACCGACGCTGCGGCAGCGACAATATGTGTTGTTGGGTAGGGGAGCGTTCTGAAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCAGGACGACCAAGGGTTCCTGTCCAACGCTAATCGGGGACGGGAGAGGCGACCCCTAAGCCGAGGCCGAAAgg                                                                                     >  2:121198/1‑251 (MQ=11)                                                                                                             gcgtggAAGATGTAACGGGCCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGGAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGGTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc                                                                                    <  1:125240/246‑1 (MQ=255)                                                                                                                     gATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGAt                                                                           >  1:237137/1‑251 (MQ=37)                                                                                                                             ggggCTAAACCAGGCAACGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACa                                                                   <  1:276110/251‑1 (MQ=37)                                                                                                                              gggCTAAAACATGCACCGAAGCTGTGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAg                                                                  <  1:165260/251‑1 (MQ=37)                                                                                                                                  tAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCCGGGGGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGGAGTCGATGGGAAAcgagtc                                                               >  2:114370/1‑245 (MQ=255)                                                                                                                                                     gCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGgt                                             <  1:287106/249‑1 (MQ=38)                                                                                                                                                                       gatgttgGGTAGGGGGGCGTGCTGTAAGCCTGTGAAGGGTTGCTGTGAGGCTTGCTGGAGGTATCAGAAGTGCGAATGTGGACATAAGTAACGATACAGCGGGTGAAAAGCCCGCTCGCCGGACTACAAAGGGTTTCTGTCCAACGTGGATCGGGGCAGGGTGAGGCGACCGCTAAGGCGAGGCTGAATGGCGTATTCGATGGGAAACAGTTTAATATTCCTGTACTTGGTGTTACTGCGAAGGTGGGAc                          <  2:89436/248‑1 (MQ=11)                                                                                                                                                                                 aGGGGAGCGGTCTGTAAGCATGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGCGACGATAAAGCGGGTGACAGGCCCGCTCGCCGGAAGACCAAGGGATCCTGTCCAACGTTAATCGGGGCAGGGTGAGACGACCCCTAAGGCGAGGCCGCAAGGCGATGTAGATGGGACACAGGGTAAGATTCCTGTACTTGGTGTTACTGAGAGGGGGGGACGGAGAAGGCt                >  2:117450/1‑250 (MQ=11)                                                                                                                                                                                  ggggAGCGCTCTGTACGCCTGTGCAGGTGTGCTGGGAGCCATGATGGAGGAATGAGAAGTGCGCATGCTGAAATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGCGTCCTGTCAAACGTTAATCGGGGAAGGGTGAGTCGAACCCTAAGGCGAGGCCGCAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGGGTTAGTGAGAAGGGGGGAGGGGGAAGGCtgc              >  2:126960/1‑249 (MQ=11)                                                                                                                                                                                              gTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCg  >  1:101406/1‑251 (MQ=31)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                        TCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCG  >  NC_000913/4038530‑4038969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.