| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,702,363 | G→A | A36V (GCC→GTC) | recO ← | recombination mediator protein RecO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,702,363 | 0 | G | A | 95.7% | 65.8 / ‑3.8 | 23 | A36V (GCC→GTC) | recO | recombination mediator protein RecO |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (9/13); total (9/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.40e-01 | |||||||||||
GTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGATTTCACTTTTACCCACAGTTCAAGGTGAACAGGCGCTTCGAACATTTCCTGCATGTCTTTACGCGCTT > NC_000913/2702125‑2702608 | gTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGacgc > 1:35595/1‑250 (MQ=255) aaaaaaaGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCCCGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATtc < 1:218556/251‑1 (MQ=255) aaGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCg > 1:172148/1‑251 (MQ=255) gagcccAGTCCGCGGGAGATAAGTTCGTGGATGTACAGACCGCTGTAAAGCTTGATACCGCTTAATGGCAGCGCCAGCGAGCCGGCTTCAGCACTG‑CGCAGCGTTTTGACTGCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGTCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCt < 2:87582/247‑1 (MQ=255) atccaaGTACGCGGGAGGGAAGTTCGTTGATGTACCTCACGCTGTAAAGCGTGAAACTGCGTATTGGCAGCGCGAGCTAGACGGCTGCATC‑CTGTCGCAGCGTTTTGACTTCGCCACGTCCGCCAAAACGTAGCAAGAGAGGTGTGAAAGGCTGTAATGCACCTGGCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACACCCAGACGCACGCGACCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCt < 2:111081/245‑1 (MQ=255) tCCAGTACGCGGGAGATAAGTTCGTTGATGTACAGACCGCTGTAAAGCGGGAGACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCATCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCATGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTgg < 2:100571/250‑1 (MQ=255) agagaAGTTCTTTGATGTACAGACCGCTGAAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCAGCGTTTGGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACggg < 1:277184/251‑1 (MQ=255) aGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACt < 1:233218/251‑1 (MQ=255) tCGTTTATGTACAGACCGCTGTAAAGCGTAATACCGCTTAATGGAAGCGCCAACGAGTCGGCTTCAGCACTT‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTAt < 2:7861/250‑1 (MQ=255) gagaCGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCCTCGGAGTTACTCTTa > 2:236622/1‑241 (MQ=255) gagaCGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTa < 1:236622/241‑1 (MQ=255) gagaCGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCa < 1:181803/251‑1 (MQ=255) ccTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACt < 1:107159/250‑1 (MQ=255) cgtgcgcaggttgtagACTTCGCCACTCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCCCCTTTCAGGGTCGAGCGTTTAGAGCGGGCGCCTTTTACAACCAGACGCCCGCGCCCCGATTCCGCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGGAACCGAGACt < 2:194340/236‑1 (MQ=255) ggcgtttggttcgcgccccgcccGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCGTGGACAACCAGACGCACGCGCCCCGAGTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTGCGCTCCACGGTCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGGGACTGCGCAGt < 2:35595/238‑1 (MQ=255) aaaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGAGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCAAACCGGAt > 1:249054/1‑251 (MQ=255) aCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGAttt < 1:93190/251‑1 (MQ=255) gCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGATTTCACtt > 1:124803/1‑251 (MQ=255) aaGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGAGTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCATGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGATTTCACtttt < 1:186617/251‑1 (MQ=255) gTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGATTTCACTTTTACCCACAGTTCAAGGTGa > 2:294472/1‑250 (MQ=255) cAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCCCGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCACCGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGATTTCACTTTTACCCGCAGTTACAGGTGAACAGGCACTTCGa > 2:205823/1‑250 (MQ=255) ccTTTGACAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGATTTCACTTTTACCCACAGTTCAAGGTGAACAGGCGCTTCGAACATTTCCTGCATGTCTTTCCGCGCt > 2:294807/1‑251 (MQ=255) cTTTGACAACCAGAAGCACGCGCCCCGCTTCATCCGTGAAGACGTCCAGCATCAGGCTGGCTTCGCACCACGGGCTACTATGCCGGCCAACTGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGGGCGCGTTCATCGTCGGCCCAGCCGGATCTCACTTTTACCACCCGTTCAAGGTGAACACGAGCTTCGCACATTTCCTGCATGGTTTTACGAGCtt > 2:181976/1‑251 (MQ=255) | GTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTG‑CGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATTCCTCCGTGAAGACGTCCAGCATCAGGCTGGTTTCGCTCCACGGGCGACTATGCAGGACAAATGCGCGCTGCCAGCCTTCCATCGGAGTTACTCTTAAAGATCGTCAACGTAACCGAGACTGCGCAGTGCGCGTTCGTCGTCGGCCCAACCGGATTTCACTTTTACCCACAGTTCAAGGTGAACAGGCGCTTCGAACATTTCCTGCATGTCTTTACGCGCTT > NC_000913/2702125‑2702608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |