| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,363 | 0 | C | . | 88.9% | 25.7 / ‑3.5 | 9 | intergenic (‑490/+919) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base . (5/3); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 2,173,364 | 0 | C | . | 88.9% | 25.7 / ‑3.5 | 9 | intergenic (‑491/+918) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base . (5/3); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGAC > NC_000913/2173113‑2173606 || tAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGCCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGCTACAAATCAGGC‑TTGCCGATACCAccc > 2:268067/1‑251 (MQ=255) gTTTGCGTCGAGCTCCACAAGGTTTTGCTCATAAGGATGACACCCGAGATTAAGGTGCGGAAAAGATTTCCACGATGCACGGCGACCGCCATCGCAACGAAGAAGACGGTGTAGGCAAGATCGCCAAACGGCCGCACCTGAGTACCCGGCCCAAAAACAGCAATTAAAA‑TGGGGCGATGGAAAAAAATAAGGC‑TTGACGAGTCCACC‑‑GCAGTATGTCCAAGCAACAAGTCCGGAACAAGTCCAATCaagc > 2:221907/1‑247 (MQ=255) ggcgttCCACAGGGTGATCCTCATAATGATGCTCCCCGAGATTAAGGTGGGGAACAGATTCCCACGATGCACGGCGCCCGCCCTCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGa < 1:206310/245‑1 (MQ=255) cgATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCACCACCGGATCAAGGCCAATCAGGAACGCCTGAccc > 2:202755/1‑250 (MQ=255) gTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGc > 1:100766/1‑251 (MQ=255) tGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCTTGCTTAGCGATGGGc > 1:45131/1‑251 (MQ=255) aGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGCCCAGATAGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGAGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCTTGCTTAGCGATGGGCGTTAAAcc > 1:196145/1‑251 (MQ=255) cccACGATCCCCGGCGACCGCAATCGCCACGAAGAAGCCGATGGTGGCAAGACCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCTTGCTTAGCGATGGGCGTTAAAccatcca < 1:140987/250‑1 (MQ=255) cagcaCCTGATTCCCCGACAAACAAACAG‑AATTAAAAATGGTGAGTGGGAAAAAAAT‑AGGCCTTGCCTAT‑CC‑CCCCGCCGTATGTCCCGGCAGCAACGCCGGATCAAGGCCAATCAGTAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCTTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCa < 1:198231/251‑1 (MQ=255) aattccccGGCACAAAAAAACCAATAAAAA‑TGGGGGGTGGAATAAAAACCGGGC‑TGGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCTTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCt < 1:202755/246‑1 (MQ=255) gataccaccgccgTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCTTGCTTAGCGATGGGCGTTAAACCATCCATAATGGGTTTAATAACCCGTGGCCTTAGCAGCATCACTGCCGCCGTTTTTAACGCCAGCTGCAATACACATTTGACATCATAACCCGCGAGGATGACGATAATCAGCCCAATCACAAAACCCACGGTGAc > 2:207808/8‑251 (MQ=255) || TAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGAC > NC_000913/2173113‑2173606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |