| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,966,530 | 0 | C | T | 87.5% | 61.3 / ‑2.2 | 24 | I38I (ATC→ATT) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base T (12/9); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 3,966,531 | 0 | C | T | 91.7% | 56.5 / ‑3.2 | 24 | L39L (CTG→TTG) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base T (12/10); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACT > NC_000913/3966300‑3966777 || gtgACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAaga < 1:203271/250‑1 (MQ=255) aaaaGACATGAGTCGATGACCGTAAACAGACATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAACCCTGGCTCGTCTGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGAACGCAAAGAGGGGCGAAGAAATCt > 2:222268/1‑251 (MQ=255) cATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTg < 1:31923/251‑1 (MQ=255) tcatgacacgaaaaaatgCATTGATGACCCTGCCATACCATGCACAACATTAAGTTCGAGATTGACCCCAAGTTGAATCACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCTGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGTGCTGGAAAACCTTGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCTGGAATCTGCACGCAAAGAGTGGCGAAGATACCTTTGGTgctgtc < 2:43907/233‑6 (MQ=255) atgatCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATAACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGAACTTATTTTTGCCATCCTGAACAAGCACGCACATGGTGGCGAGGATATCTTTGGTGGTGTCGTaaaggggagatttgaggatggt > 2:5241/1‑230 (MQ=255) gatCCGGCCATACCATTCACAACATGAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCCCTATGAATCTTACCGAATTAAAGAATACGCCGGTCTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATACTGCAGGATGGAtt < 2:154277/251‑1 (MQ=255) tAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCTCAGACAg < 1:465/250‑1 (MQ=255) cccAAGTTTAAGAACTCAAACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAACCCTGGCTCGTATGCGTAAGCAGGACATTTTTTTTGCCATTTTGAAGCAGCACGCAAAGCATGGCGAAGATATCTTTGGTGTTGGCGTACTGGAGATATTGCAGGATGGGTTTGGTTTCATCCGTTCAGCTAACAGCTCCTACCTCGCCGGTc > 2:195827/1‑251 (MQ=255) aaGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTGTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTCAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGAAAAGAGTGGCGAAGAAATCTTTGGTGATGACGTAGTGGCGATATTGCAGGATGGATTTGGTTTCCTCCGTTACGAAGACAGCTCCTACCACGCCGGTCCtg > 1:69463/1‑251 (MQ=255) tttAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCtgatg > 1:60937/1‑251 (MQ=255) aaGAACTCACTCCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGAc < 1:146722/250‑1 (MQ=255) acTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTTAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCTGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTcccc < 2:48264/251‑1 (MQ=255) cGAATTAAAGAATACGCCGGTTTCTGAGCTGATCCCTCTCGGCGAAATTATGGGGCTGGAAACCCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCTATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTTGTGATGGCTTACTGGAGATATTGCAGAATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgcc < 1:35461/251‑1 (MQ=255) gAATTAAAGAATTCGCCGTTTTCTGAGCTGATCACGCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATTCGTAAGCAGGACATTATTTTTGCCTTTTTGAAGCAGCACGCAAAGAGTGGCGAATATATCTTGGGTGATGGCTTCCTGGAAATATTGCAGGAGGGATTTGGTTTCCTCCTTTCCGCCGACAGCTCCTCCCTCGCCGTTCCTGATGACATCTACGTTGCCCCTAGCCAAACccgccg < 2:264058/251‑1 (MQ=255) cGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATAACTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGGTTTGGTTTCCTCCGTTACGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCAACGTTTTCCCTAGCCAACTCCCCCGTTTCAACCCCCGc > 2:222791/1‑251 (MQ=255) aGCTGATCAATCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTCTGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGAGGCGAAGATATCTTTGGTGGTGGAGTACTGGAGATATTGCAGGATGGATTTGGTTTACTCCGTTCCGCAGCCAGCTCCTACCTCGCCGGTCCTGGTGCCCTCTAAGTTTCCCCTAGCCAAATCCGCAGTTTCAACCTCCGCACTGGTGATAcc > 2:291656/1‑251 (MQ=255) gAAAATATGGGGCTGGAAAACCTGGATCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTcg > 1:106287/1‑251 (MQ=255) accaggCTCATATGCGTAAGAAGGACATTATTTTTGACATTTTGAAGCAGCACACAAAGAGTGGCGAAGATATCTTTGGTGATGGCGAACTGGACATATAGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTCCGTTTACCCTAGCCAAATCCGCAGTTTCAACCTCCGAACTGGTGATACCATCTCTGGAAAGCTTAGCCCGCCGCAAGAAgggga > 2:265940/5‑247 (MQ=255) tAAGCAGGAAATTATTTTTGCCATTTTGAAGCAGCACGCCAAGCGTGGCGAAGATTTTTTTGGTGATGGCTTACTGGAGATTTTGCAGGATGGGTTTGGTTTCCTCCTTTCCGCAGACAGCTCCTACCTCGCCGGACCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCATCCTCCGCCCTGGTGATACCATCTCTGGACAGATTCACCCGCCGCAAGAAGGTGAAAGCTATTTTGCgctgt > 2:289645/1‑250 (MQ=255) aaGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGCAAGAAGGTGAACGCTATTTTGCgctgct > 1:219056/1‑251 (MQ=255) agccggACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGCCAGCTCCTACCTCGCCGGTCCTGTTGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGa > 2:260283/5‑210 (MQ=255) aGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGa < 1:260283/210‑1 (MQ=255) attTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCAGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACg > 1:170775/1‑250 (MQ=255) cATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGGGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGGTAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACt > 2:148623/1‑251 (MQ=255) || GTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACT > NC_000913/3966300‑3966777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |