mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC JC | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| RA | 71,134 | G→A | G250S (GGT→AGT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 557,635 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
| JC JC | 568,449 | IS2 (–) +5 bp | coding (135‑139/333 nt) | emrE → | multidrug/betaine/choline efflux transporter EmrE |
| RA | 612,046 | G→A | P150L (CCG→CTG) | fepA ← | ferric enterobactin outer membrane transporter |
| RA | 621,783 | G→A | A136V (GCC→GTC) | fepD ← | ferric enterobactin ABC transporter membrane subunit FebD |
| RA | 631,633 | G→A | W580* (TGG→TGA) | cstA → | pyruvate transporter CstA |
| RA | 642,784 | G→A | A233T (GCG→ACG) | ybdR → | putative Zn(2(+))‑dependent alcohol dehydrogenase YbdR |
| RA | 643,506 | G→A | intergenic (‑87/+51) | yldA ← / ← rnk | protein YldA/nucleoside diphosphate kinase regulator |
| RA | 646,861 | G→A | L217F (CTC→TTC) | citG ← | triphosphoribosyl‑dephospho‑CoA synthase |
| RA | 657,095 | C→T | A180V (GCC→GTC) | pagP → | Lipid A palmitoyltransferase |
| RA | 667,992 | C→T | G76S (GGT→AGT) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 949,985 | G→A | W106* (TGG→TGA) | ycaK → | putative oxidoreductase YcaK |
| RA | 987,152 | G→T | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| JC JC | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,325 | A→G | K401K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,290,881 | C→T | L214F (CTT→TTT) | rssB → | regulator of RpoS |
| MC JC | 1,294,035 | Δ141 bp | [tdk] | [tdk] | |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| JC | 1,303,073 | Δ12 bp | coding (175‑186/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,353,673 | G→A | L282L (CTC→CTT) | sapC ← | putrescine ABC exporter membrane protein SapC |
| RA | 1,353,758 | T→A | D254V (GAT→GTT) | sapC ← | putrescine ABC exporter membrane protein SapC |
| RA | 1,478,295 | C→T | L24L (CTA→TTA) | ynbB → | putative CDP‑diglyceride synthase |
| RA | 1,494,388 | Δ1 bp | coding (684/924 nt) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,515,342 | G→A | G194E (GGA→GAA) | ydcV → | putative ABC transporter membrane subunit YdcV |
| RA | 1,517,508 | G→T | V40V (GTG→GTT) | ortT → | orphan toxin OrtT |
| RA | 1,521,520 | G→A | L516F (CTC→TTC) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,592,893 | G→A | intergenic (‑451/+5724) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,631,845 | G→A | A147A (GCC→GCT) | ydfJ ← | putative transporter YdfJ |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,667,887 | Δ1 bp | coding (678/1221 nt) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,744,751 | Δ1 bp | coding (1295/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,748,093 | C→T | R321R (CGC→CGT) | ydhS → | FAD/NAD(P) binding domain‑containing protein YdhS |
| RA | 1,749,123 | C→T | G146D (GGT→GAT) | ydhT ← | uncharacterized protein YdhT |
| RA | 1,750,502 | C→T | C171Y (TGC→TAC) | ydhX ← | putative 4Fe‑4S ferredoxin‑like protein YdhX |
| RA | 1,750,572 | C→T | A148T (GCA→ACA) | ydhX ← | putative 4Fe‑4S ferredoxin‑like protein YdhX |
| RA | 1,752,116 | C→T | R572H (CGT→CAT) | ydhV ← | putative oxidoreductase YdhV |
| RA | 1,757,109 | A→G | *471* (TAA→TGA) | pykF → | pyruvate kinase 1 |
| RA | 1,772,389 | C→T | intergenic (+104/‑123) | ydiM → / → ydiN | putative exporter YdiM/putative transporter YdiN |
| RA | 1,776,234 | C→T | H216H (CAC→CAT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,781,148 | C→T | L250L (CTG→TTG) | ydiR → | putative electron transfer flavoprotein subunit YdiR |
| RA | 1,789,643 | C→T | P11S (CCT→TCT) | ydiE → | PF10636 family protein YdiE |
| JC JC | 1,792,772 | IS2 (–) +5 bp | intergenic (‑41/+33) | nlpC ← / ← btuD | NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit |
| RA | 1,794,304 | C→T | G283G (GGG→GGA) | btuC ← | vitamin B12 ABC transporter membrane subunit |
| RA | 1,802,144 | C→T | E143K (GAA→AAA) | thrS ← | threonine‑‑tRNA ligase |
| RA | 1,807,825 | C→T | S10S (AGC→AGT) | yniA → | putative kinase YniA |
| RA | 1,810,624 | C→T | I138I (ATC→ATT) | ydjM → | inner membrane protein YdjM |
| RA | 1,816,002 | C→T | D712D (GAC→GAT) | katE → | catalase HPII |
| RA | 1,820,949 | C→T | G89E (GGA→GAA) | chbC ← | N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component |
| RA | 1,823,332 | C→T | intergenic (+47/‑183) | nadE → / → cho | NH3‑dependent NAD(+) synthetase/excinuclease Cho |
| RA | 1,828,824 | C→T | R304Q (CGA→CAA) | astD ← | aldehyde dehydrogenase |
| RA | 1,831,373 | C→T | A204T (GCG→ACG) | astC ← | succinylornithine transaminase |
| RA | 1,831,664 | C→T | E107K (GAA→AAA) | astC ← | succinylornithine transaminase |
| RA | 1,833,493 | C→T | T31T (ACC→ACT) | ydjX → | DedA family protein YdjX |
| RA | 1,842,475 | C→T | L35L (CTC→CTT) | gdhA → | glutamate dehydrogenase |
| RA | 1,843,339 | C→T | T323T (ACC→ACT) | gdhA → | glutamate dehydrogenase |
| RA | 1,844,565 | C→T | A103T (GCT→ACT) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| RA | 1,845,513 | C→T | R483Q (CGG→CAG) | topB ← | DNA topoisomerase III |
| RA | 1,850,545 | C→T | A570V (GCA→GTA) | sppA → | protease IV, a signal peptide peptidase |
| RA | 1,851,614 | C→T | A252V (GCC→GTC) | ansA → | L‑asparaginase 1 |
| RA | 1,855,005 | C→T | A323T (GCC→ACC) | ydjG ← | NADH‑dependent methylglyoxal reductase |
| RA | 1,857,164 | C→T | P202P (CCG→CCA) | ydjI ← | L‑glycero‑L‑galacto‑octuluronate‑1‑phosphate aldolase |
| RA | 1,858,800 | C→T | G12S (GGC→AGC) | ydjJ ← | putative zinc‑binding dehydrogenase YdjJ |
| RA | 1,866,710 | C→T | intergenic (‑238/‑198) | mipA ← / → yeaG | MltA‑interacting protein/protein kinase YeaG |
| RA | 1,871,516 | C→T | R378C (CGT→TGT) | cdgI → | putative c‑di‑GMP binding protein CdgI |
| RA | 1,914,009 | C→T | A270T (GCA→ACA) | prc ← | tail‑specific protease |
| RA | 1,916,210 | C→T | intergenic (‑82/‑48) | msrC ← / → letA | free methionine‑(R)‑sulfoxide reductase/intermembrane transport protein LetA |
| RA | 1,950,945 | G→A | G38G (GGG→GGA) | yecD → | isochorismatase family protein YecD |
| RA | 1,951,285 | G→A | A152T (GCC→ACC) | yecD → | isochorismatase family protein YecD |
| RA | 1,951,576 | G→A | C61Y (TGT→TAT) | yecE → | DUF72 domain‑containing protein YecE |
| RA | 1,953,546 | G→A | Q35Q (CAG→CAA) | cmoB → | tRNA U34 carboxymethyltransferase |
| RA | 1,978,243 | G→T | intergenic (‑46/+275) | flhD ← / ← insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| RA | 1,982,189 | G→A | L67F (CTT→TTT) | otsB ← | trehalose‑6‑phosphate phosphatase |
| RA | 1,983,899 | G→A | P391S (CCG→TCG) | araG ← | arabinose ABC transporter ATP binding subunit |
| RA | 2,003,264 | C→T | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,032,423 | G→A | V219V (GTC→GTT) | yedJ ← | putative HD superfamily phosphohydrolase YedJ |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,242,121 | A→G | S283P (TCG→CCG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,259,422 | A→C | intergenic (‑126/+297) | psuK ← / ← fruA | putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA |
| JC JC | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| JC JC | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| RA | 2,397,444 | G→A | Q908* (CAA→TAA) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| JC JC | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| JC JC | 2,666,074 | IS1 (+) +9 bp | coding (640‑648/1281 nt) | csiE → | stationary phase‑inducible protein CsiE |
| RA | 3,224,628 | C→T | L666L (CTG→TTG) | ebgA → | evolved beta‑D‑galactosidase subunit alpha |
| RA | 3,268,970 | A→G | T186A (ACA→GCA) | yhaC → | uncharacterized protein YhaC |
| RA | 3,319,705 | A→G | T357A (ACT→GCT) | argG → | argininosuccinate synthetase |
| RA | 3,320,867 | C→T | P249P (CCG→CCA) | yhbX ← | putative hydrolase YhbX |
| RA | 3,323,477 | C→T | G198G (GGG→GGA) | glmM ← | phosphoglucosamine mutase |
| RA | 3,331,507 | C→T | G83D (GGT→GAT) | obgE ← | GTPase ObgE |
| RA | 3,337,144 | C→T | G38E (GGG→GAG) | mlaB ← | intermembrane phospholipid transport system protein MlaB |
| RA | 3,346,861 | C→T | A95V (GCT→GTT) | ptsN → | phosphotransferase system enzyme IIA(Ntr) |
| RA | 3,350,292 | C→T | A56A (GCG→GCA) | elbB ← | low activity glyoxalase ElbB |
| RA | 3,360,240 | C→T | P348L (CCG→CTG) | gltD → | glutamate synthase subunit GltD |
| RA | 3,360,951 | C→T | intergenic (+335/‑225) | gltD → / → gltF | glutamate synthase subunit GltD/periplasmic protein GltF |
| RA | 3,361,564 | C→T | A130V (GCC→GTC) | gltF → | periplasmic protein GltF |
| RA | 3,362,459 | C→T | S116S (AGC→AGT) | yhcA → | putative fimbrial chaperone YhcA |
| RA | 3,363,653 | C→T | L283L (CTG→TTG) | yhcD → | putative fimbrial usher protein YhcD |
| RA | 3,383,369 | C→T | K300K (AAG→AAA) | mdh ← | malate dehydrogenase |
| RA | 3,397,982 | C→T | D133N (GAC→AAC) | yhdE ← | nucleoside triphosphate pyrophosphatase YhdE |
| RA | 3,406,476 | C→T | A187V (GCG→GTG) | accC → | biotin carboxylase |
| RA | 3,432,173 | G→A | L98F (CTC→TTC) | smg ← | DUF494 domain‑containing protein Smg |
| RA | 3,439,614 | G→A | intergenic (‑105/+2) | yhdN ← / ← rplQ | DUF1992 domain‑containing protein YhdN/50S ribosomal subunit protein L17 |
| RA | 3,445,876 | G→A | L89L (CTG→TTG) | rplF ← | 50S ribosomal subunit protein L6 |
| RA | 3,446,190 | G→A | A119V (GCT→GTT) | rpsH ← | 30S ribosomal subunit protein S8 |
| RA | 3,449,865 | G→A | P7S (CCT→TCT) | rpsC ← | 30S ribosomal subunit protein S3 |
| RA | 3,454,722 | T→C | Y226C (TAC→TGC) | gspA ← | Type II secretion system protein GspA |
| RA | 3,459,326 | G→A | V330I (GTT→ATT) | gspE → | Type II secretion system protein GspE |
| RA | 3,469,561 | G→A | S98F (TCT→TTT) | chiA ← | endochitinase |
| RA | 3,469,763 | G→A | Q31* (CAA→TAA) | chiA ← | endochitinase |
| RA | 3,486,205 | C→A | T29K (ACG→AAG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,496,485 | G→A | E825E (GAG→GAA) | nirB → | nitrite reductase (NADH) large subunit |
| RA | 3,506,702 | G→A | A212V (GCC→GTC) | yhfT ← | uncharacterized protein YhfT |
| RA | 3,511,870 | G→A | L159L (CTG→TTG) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,514,651 | G→A | L137L (CTG→TTG) | rpe ← | ribulose‑phosphate 3‑epimerase |
| RA | 3,541,403 | G→A | D333N (GAC→AAC) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,564,733 | G→A | Q617* (CAG→TAG) | glgP ← | glycogen phosphorylase |
| RA | 3,573,001 | G→A | L168L (CTG→TTG) | glgB ← | 1,4‑alpha‑glucan branching enzyme |
| RA | 3,575,597 | G→A | G176E (GGA→GAA) | yhgN → | MarC family putative inner membrane protein YhgN |
| RA | 3,587,922 | G→A | G64G (GGC→GGT) | ugpQ ← | glycerophosphodiester phosphodiesterase UgpQ |
| RA | 3,587,957 | G→A | L53F (CTC→TTC) | ugpQ ← | glycerophosphodiester phosphodiesterase UgpQ |
| RA | 3,595,740 | G→A | L222L (CTG→TTG) | livH ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH |
| RA | 3,602,478 | T→C | L90L (CTA→CTG) | ftsE ← | cell division protein FtsE |
| RA | 3,603,367 | G→A | P293S (CCG→TCG) | ftsY ← | signal recognition particle receptor |
| RA | 3,647,997 | G→A | intergenic (‑209/‑66) | dinQ ← / → agrA | membrane toxin DinQ/small RNA AgrA |
| MC JC | 3,682,261 | Δ34 bp | coding (1154‑1187/1287 nt) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| JC JC | 3,737,137 | IS2 (+) +5 bp | coding (37‑41/825 nt) | bax ← | putative glycoside hydrolase Bax |
| RA | 3,786,064 | G→A | E269K (GAA→AAA) | gpmM → | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,788,378 | C→T | T93M (ACG→ATG) | yibQ → | divergent polysaccharide deacetylase domain‑containing protein YibQ |
| RA | 3,790,380 | C→T | Q322Q (CAG→CAA) | tdh ← | threonine dehydrogenase |
| RA | 3,796,150 | G→A | A58T (GCA→ACA) | waaC → | ADP‑heptose:LPS heptosyltransferase 1 |
| RA | 3,802,483 | G→A | A192A (GCC→GCT) | waaO ← | UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase |
| RA | 3,830,893 | A→G | N146S (AAT→AGT) | yicH → | AsmA family protein YicH |
| RA | 3,841,368 | C→T | G124G (GGG→GGA) | nepI ← | purine ribonucleoside exporter |
| RA | 3,841,478 | C→T | V88I (GTT→ATT) | nepI ← | purine ribonucleoside exporter |
| RA | 3,852,000 | C→T | G262E (GGG→GAG) | ilvB ← | acetohydroxy acid synthase I subunit IlvB |
| RA | 3,868,421 | C→T | V297I (GTC→ATC) | yidR ← | DUF3748 domain‑containing galacturonate catabolism protein YidR |
| RA | 3,871,577 | C→T | E52K (GAA→AAA) | dgoT ← | D‑galactonate:H(+) symporter |
| RA | 3,873,336 | C→T | V93M (GTG→ATG) | dgoA ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | 3,880,045 | C→T | M25I (ATG→ATA) | gyrB ← | DNA gyrase subunit B |
| RA | 3,886,749 | G→A | intergenic (+27/‑79) | yidC → / → mnmE | membrane protein insertase YidC/5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit |
| RA | 3,891,231 | G→A | L332L (CTG→CTA) | tnaB → | tryptophan:H(+) symporter TnaB |
| RA | 3,891,677 | G→A | M21I (ATG→ATA) | mdtL → | efflux pump MdtL |
| RA | 3,892,396 | C→T | A261V (GCG→GTG) | mdtL → | efflux pump MdtL |
| RA | 3,895,645 | C→T | G322D (GGC→GAC) | adeP ← | adenine:H(+) symporter |
| RA | 3,896,116 | C→T | G165D (GGT→GAT) | adeP ← | adenine:H(+) symporter |
| RA | 3,898,302 | G→A | G94D (GGT→GAT) | cbrC → | PF03691 family colicin E2 tolerance protein CbrC |
| RA | 3,949,826 | G→A | R48R (CGC→CGT) | yifB ← | putative magnesium chelatase YifB |
| RA | 3,953,554 | G→A | G26E (GGA→GAA) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 3,956,739 | C→T | T470I (ACC→ATC) | ilvA → | threonine deaminase |
| RA | 3,957,961 | G→A | intergenic (‑141/‑9) | ilvY ← / → ilvC | DNA‑binding transcriptional dual regulator IlvY/ketol‑acid reductoisomerase (NADP(+)) |
| RA | 3,960,596 | G→A | intergenic (‑783/‑81) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/ATP‑dependent DNA helicase Rep |
| RA | 4,027,754 | G→A | A340V (GCG→GTG) | fadA ← | 3‑ketoacyl‑CoA thiolase |
| JC JC | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| JC JC | 4,135,180 | IS2 (–) +5 bp | coding (1346‑1350/2181 nt) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,146,389 | (T)6→7 | coding (132/879 nt) | pflC → | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| RA | 4,161,093 | C→T | S9S (AGC→AGT) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,206,024 | G→A | I503I (ATC→ATT) | purH ← | bifunctional AICAR transformylase/IMP cyclohydrolase |
| RA | 4,207,461 | G→A | A24A (GCC→GCT) | purH ← | bifunctional AICAR transformylase/IMP cyclohydrolase |
| RA | 4,209,562 | G→A | noncoding (1416/1542 nt) | rrsE → | 16S ribosomal RNA |
| RA | 4,236,742 | C→T | P161S (CCG→TCG) | yjbF → | lipoprotein YjbF |
| RA | 4,246,296 | C→T | G42S (GGC→AGC) | malE ← | maltose ABC transporter periplasmic binding protein |
| RA | 4,281,878 | C→T | D400N (GAT→AAT) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,352,327 | A→G | K81K (AAA→AAG) | yjdJ → | putative N‑acetyltransferase YjdJ |
| RA | 4,371,696 | C→T | D224D (GAC→GAT) | groL → | chaperonin GroEL |
| RA | 4,429,371 | C→T | P146L (CCC→CTC) | fklB → | peptidyl‑prolyl cis‑trans isomerase FklB |
| JC JC | 4,536,236 | IS5 (+) +4 bp | intergenic (‑2183/‑358) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,537,366 | C→T | G77S (GGT→AGT) | nanS ← | N‑acetyl‑9‑O‑acetylneuraminate esterase |
| RA | 4,542,683 | Δ1 bp | intergenic (+50/‑432) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196347 | 1211482 | 15136 | 5 [4] | [4] 5 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 22 [0] | [0] 20 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423873–3424232 | 3424435–3424238 | 7–563 | 5 [4] | [4] 5 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 43 (1.060) | 41/490 | 0.2 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382183 | NA (NA) | noncoding (924/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382179 = | NA (NA) | 37 (0.920) | 37/486 | 0.2 | NA | noncoding (920/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 566774 | 38 (0.930) | 13 (0.320) | 8/486 | 2.4 | 26.9% | pseudogene (91/93 nt) | renD | protein RenD |
| ? | NC_000913 | 568036 = | 33 (0.820) | pseudogene (2/213 nt) | renD | protein RenD | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 22 (0.540) | 21/490 | 0.9 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 20 (0.490) | 19/490 | 1.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||