| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,857,164 | C→T | P202P (CCG→CCA) | ydjI ← | L‑glycero‑L‑galacto‑octuluronate‑1‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,857,164 | 0 | C | T | 97.1% | 98.2 / NA | 35 | P202P (CCG→CCA) | ydjI | L‑glycero‑L‑galacto‑octuluronate‑1‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (20/13); total (21/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGA > NC_000913/1856923‑1857405 | aTCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGa > 1:166264/1‑250 (MQ=255) tCCATATCATTATTCCTCTTTGCCATCAGAACCGAACAGGTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTGACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCCCTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTGTCGCGATACCCAACGAAATTGCAGTTTTAATTTCGGCATCACTGATCCCCAATGTACCTTGCAAAACCAGTGGAACAGaa < 2:274336/250‑1 (MQ=255) tCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATCCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCATGCAAAACCAGTGGAACAGaa > 2:257005/1‑250 (MQ=255) ttCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGAAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGACACGGCATCGCGt > 1:209446/1‑250 (MQ=255) aTCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTAcgcg < 1:199553/243‑1 (MQ=255) aTCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTAcgcg > 2:199553/1‑243 (MQ=255) cGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAg < 2:336503/251‑1 (MQ=255) cAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTc > 2:43137/1‑250 (MQ=255) ttttttCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAACGCTGATCCTGGTTTTCTTTCACTGCAACAATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGACGCACCGTGCAAAACCAGTGGACCAGACACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTTTGGc > 2:33896/1‑251 (MQ=255) aaTGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGt > 1:102029/1‑251 (MQ=255) ccGTTCTTTTACAGCTTTACGTCCTTCCCGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTACAACAATTGCGGACTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGCAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACAAGCGGAAAAGAAACGGCATCGCGTACGCGATTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATaac > 2:253036/1‑250 (MQ=255) gTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAAcc < 1:317237/251‑1 (MQ=255) cGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTTGTTTTCTTTCACTGCAACCATTGCGTCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTTCAGTGTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGTACAGAAAGGGCATCGCGTACGCGTTTGACGGCCTCAAAGTTCGATTGTGGCTCTGACGCATAAACCCCATGCTCGGTGCCGAt < 2:195315/251‑1 (MQ=255) aGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGGGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATcaca < 1:413781/251‑1 (MQ=255) gAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTTCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGc < 1:413848/251‑1 (MQ=255) aTCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGtt > 1:283486/1‑251 (MQ=255) ggTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGAGACCCAACGAAAGTGCGGTTTTAAGGGCGGCATCACTGATCCCCGATGCACCGTGCAAAGCCAGGGGAGCAGAAACGGCAGCGCGTACGGGTTTGGCGGCCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTcaac < 2:285995/250‑1 (MQ=255) cACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAgccg > 2:83627/1‑251 (MQ=255) aaCCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGt < 2:65217/251‑1 (MQ=255) cATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTc > 1:414796/1‑249 (MQ=255) tGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt > 1:265236/1‑251 (MQ=255) gACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGtat > 2:285262/1‑249 (MQ=255) agCTCCGTACGAATGTTGATTTTCGCGATACCCACCGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGATCTCAAAGTTCAATTGTGGCTCTGACGTATAAACACCATGCTGGCTGCCGATGGCGACAGCCAATGAATCACAGACCGTACGTTCAACAAATTAAGCCGCCTGGTCAGGATCGGTATAGCGAt > 2:232041/1‑250 (MQ=255) cGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCg < 2:414796/251‑1 (MQ=255) ttCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCAt > 2:184347/1‑250 (MQ=255) cgcgATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAACACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCAAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATaa > 1:267563/1‑250 (MQ=255) gAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGAAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGTCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTAcc < 2:265236/251‑1 (MQ=255) aGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTAATTACCGACATGcc > 1:399210/1‑251 (MQ=255) cTGATCCCCGATGCACCGTGCAAAACCCGTGGAACAGAAAAGGCATAGCGTACGCGTTTGACGACCTCAAAGTTCACTTGTGGCTCTGACGAATAAACACCATGCTGGATGCCGATGGCGACAGCCAATGAATCACAGCGCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGCTCGGTATAGCGATAGCCCGCCATCGCTTCCTCCTAAACGGCTTCATTACCGACATGCCCTAATTCCGCCTCGAcccg > 2:404020/1‑249 (MQ=255) ccccGATGCGCCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTTGGGCGCTGACGTATAATCCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATa < 1:373263/250‑1 (MQ=255) cACCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCAGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCATGGTCAGGATCGGGATAGTGATAGCCCGCCAGCGCTTCCTCATAACCGGTTTCATTACCGACATGCACTAATTCCGACTCTACCGGAATACCCAGCgg > 2:400768/1‑250 (MQ=255) aCCGTGCAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGAt > 1:257199/1‑251 (MQ=255) cAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCt < 2:148356/146‑1 (MQ=255) cAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCt > 1:148356/1‑146 (MQ=255) cAAAACCAGTGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGgaaga < 1:19336/251‑1 (MQ=255) | ATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGA > NC_000913/1856923‑1857405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |