| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,844,565 | C→T | A103T (GCT→ACT) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,844,565 | 0 | C | T | 94.4% | 52.9 / ‑6.1 | 19 | A103T (GCT→ACT) | ynjI | DUF1266 domain‑containing protein YnjI |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (7/10); minor base G (1/0); total (9/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGCCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACACATGTTAAATAAAACCCCCACTTACAAAGCAGCATGGCCTTATTTTCTTTAATCATCCGT > NC_000913/1844320‑1844788 | cATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGat < 2:122005/251‑1 (MQ=255) cATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGc < 2:122287/251‑1 (MQ=255) aTTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGCTATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCCGTTGTTCTTTTTTTGCTTTAAAACCGGcc > 2:295545/1‑251 (MQ=255) gATCCTCTAAAGAATCGCGTATTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGGATCTTTGCCAGGTTCAGGCTTTCGCGGCAAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGACTCGATAAGGTGCGATCAATTGTAGAGTCTGTATCTTCTCGATACTGAGCGGCTCAATACCTTTAGGTCGATAATAAAGCAGTTGTTCTTTTTTTGCTTTCAAACCGGCCCg > 2:218766/1‑250 (MQ=255) ccTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACa < 1:295545/251‑1 (MQ=255) gTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCcatcat > 2:315250/1‑250 (MQ=255) tACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCAtaattaa < 1:84227/250‑1 (MQ=255) gATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATaaa < 2:166035/251‑1 (MQ=255) gATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATaa > 1:98570/1‑250 (MQ=255) ttGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAAcc < 1:95013/248‑1 (MQ=255) ttCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGaca > 2:1147/1‑250 (MQ=255) gACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAAcaca < 2:280475/251‑1 (MQ=255) aTGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTTAGCGGTTCAATACCTTTAGTCTGATAAGAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACACATGTtaaataa < 1:166093/250‑1 (MQ=255) aTAGAATCGATAAGGTGCGATCACTTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCCATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTACTAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACACCGACAACACATGTTAAATAAAAcc > 1:180680/1‑251 (MQ=255) gATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGACCGGCTCAATACATTTAGTCTGATATTAATGCAGTTGTTCTTTTTTTGCTTTAAACCCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGGGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACCCATGTTAAATAAAACCCCCACtt > 1:368275/1‑250 (MQ=255) aGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACACATGTTAAATAAAACCCCCACTTACAAAGCAGCATGGCCTTAtt < 1:315250/251‑1 (MQ=255) tctcGATACTGAGCGGCTCAATACCTTTAGACTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACACATGTTAAATAAAACCCCCACTTACAAAGCAGCATGGCCTTATTTTCTTTAatcatc > 1:214761/1‑251 (MQ=255) ctcGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACACATGTTAAATAAAACCCCCACTTACAAAGCAGCATGGCCTTATTTTCTTTAATCATcc > 1:94393/1‑251 (MQ=255) cGATACTGAGCGGCTCAATACCTTTAGTCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACACATGTTAAATAAAACCCCCACTTACAAAGCAGCATGGCCTTATTTTCTTTAATCATCCGt < 1:28396/251‑1 (MQ=255) | CATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGATACTGAGCGGCTCAATACCTTTAGCCTGATAATAATGCAGTTGTTCTTTTTTTGCTTTAAAACCGGCCCGAACAATAAGCCCCATCATAATTAATAGATAAAGAAAAGAGCATCCCGCGGTAATCAGGCCTCTTTCATTCAAACCGTTGGATGTTATCGCTGCGAACACAAACATTACAGCGACAACACATGTTAAATAAAACCCCCACTTACAAAGCAGCATGGCCTTATTTTCTTTAATCATCCGT > NC_000913/1844320‑1844788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |