#=GENOME_DIFF	1.0
#=CREATED	12:59:08 19 Dec 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20241218run12/IH195_S4_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20241218run12/IH195_S4_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20241218run12/IH195_S4_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH195_S4_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH195_S4_L001_R2_001.fastq.gz
#=CONVERTED-BASES	205676154
#=CONVERTED-READS	835051
#=INPUT-BASES	205677045
#=INPUT-READS	835072
#=MAPPED-BASES	190106686
#=MAPPED-READS	774325
MOB	1	586,587	NC_000913	57276	IS2	1	5
SNP	2	185	NC_000913	71134	A
DEL	3	577,588	NC_000913	257908	776
SNP	4	186	NC_000913	557635	T
MOB	5	595,596	NC_000913	568449	IS2	-1	5
SNP	6	267	NC_000913	612046	A
SNP	7	268	NC_000913	621783	A
SNP	8	269	NC_000913	631633	A
SNP	9	270	NC_000913	642784	A
SNP	10	271	NC_000913	643506	A
SNP	11	272	NC_000913	646861	A
SNP	12	273	NC_000913	657095	T
SNP	13	274	NC_000913	667992	T
SNP	14	276	NC_000913	949985	A
SNP	15	277	NC_000913	987152	T
MOB	16	592,597	NC_000913	1105376	IS2	-1	5
SNP	17	278	NC_000913	1196220	T
SNP	18	279	NC_000913	1196232	T
SNP	19	280	NC_000913	1196245	C
SNP	20	281	NC_000913	1196247	G
SNP	21	282	NC_000913	1196277	T
SNP	22	283	NC_000913	1196280	C
SNP	23	284	NC_000913	1196283	G
SNP	24	285	NC_000913	1196292	T
SNP	25	286	NC_000913	1196304	A
SNP	26	287	NC_000913	1196316	A
SNP	27	288	NC_000913	1196325	G
SNP	28	290	NC_000913	1290881	T
DEL	29	579,598	NC_000913	1294035	141
DEL	30	580,599	NC_000913	1299499	1199
DEL	31	600	NC_000913	1303073	12
SNP	32	291	NC_000913	1337394	G
SNP	33	292	NC_000913	1353673	A
SNP	34	293	NC_000913	1353758	A
SNP	35	412	NC_000913	1478295	T
DEL	36	413	NC_000913	1494388	1
SNP	37	414	NC_000913	1515342	A
SNP	38	415	NC_000913	1517508	T
SNP	39	416	NC_000913	1521520	A
SNP	40	417	NC_000913	1592893	A
SNP	41	418	NC_000913	1631845	A
SNP	42	440	NC_000913	1652331	C
DEL	43	441	NC_000913	1667887	1
DEL	44	442	NC_000913	1744751	1
SNP	45	443	NC_000913	1748093	T
SNP	46	444	NC_000913	1749123	T
SNP	47	445	NC_000913	1750502	T
SNP	48	446	NC_000913	1750572	T
SNP	49	447	NC_000913	1752116	T
SNP	50	448	NC_000913	1757109	G
SNP	51	449	NC_000913	1772389	T
SNP	52	450	NC_000913	1776234	T
SNP	53	451	NC_000913	1781148	T
SNP	54	452	NC_000913	1789643	T
MOB	55	602,603	NC_000913	1792772	IS2	-1	5
SNP	56	453	NC_000913	1794304	T
SNP	57	454	NC_000913	1802144	T
SNP	58	455	NC_000913	1807825	T
SNP	59	456	NC_000913	1810624	T
SNP	60	457	NC_000913	1816002	T
SNP	61	458	NC_000913	1820949	T
SNP	62	459	NC_000913	1823332	T
SNP	63	460	NC_000913	1828824	T
SNP	64	461	NC_000913	1831373	T
SNP	65	462	NC_000913	1831664	T
SNP	66	463	NC_000913	1833493	T
SNP	67	464	NC_000913	1842475	T
SNP	68	465	NC_000913	1843339	T
SNP	69	466	NC_000913	1844565	T
SNP	70	467	NC_000913	1845513	T
SNP	71	468	NC_000913	1850545	T
SNP	72	469	NC_000913	1851614	T
SNP	73	470	NC_000913	1855005	T
SNP	74	471	NC_000913	1857164	T
SNP	75	472	NC_000913	1858800	T
SNP	76	473	NC_000913	1866710	T
SNP	77	474	NC_000913	1871516	T
SNP	78	475	NC_000913	1914009	T
SNP	79	476	NC_000913	1916210	T
SNP	80	477	NC_000913	1950945	A
SNP	81	478	NC_000913	1951285	A
SNP	82	479	NC_000913	1951576	A
SNP	83	480	NC_000913	1953546	A
SNP	84	481	NC_000913	1978243	T
SNP	85	482	NC_000913	1982189	A
SNP	86	483	NC_000913	1983899	A
SNP	87	484	NC_000913	2003264	T
SNP	88	485	NC_000913	2032423	A
DEL	89	486,487	NC_000913	2173363	2
SNP	90	488	NC_000913	2242121	G
SNP	91	489	NC_000913	2259422	C
MOB	92	608,609	NC_000913	2269876	IS5	1	4
MOB	93	607,612	NC_000913	2319850	IS2	1	5
SNP	94	490	NC_000913	2397444	A
MOB	95	604,605	NC_000913	2406780	IS1	-1	8
DEL	96	582,613	NC_000913	2558699	6790
MOB	97	589,590	NC_000913	2666074	IS1	1	9
SNP	98	492	NC_000913	3224628	T
SNP	99	493	NC_000913	3268970	G
SNP	100	494	NC_000913	3319705	G
SNP	101	495	NC_000913	3320867	T
SNP	102	496	NC_000913	3323477	T
SNP	103	497	NC_000913	3331507	T
SNP	104	498	NC_000913	3337144	T
SNP	105	499	NC_000913	3346861	T
SNP	106	500	NC_000913	3350292	T
SNP	107	501	NC_000913	3360240	T
SNP	108	502	NC_000913	3360951	T
SNP	109	503	NC_000913	3361564	T
SNP	110	504	NC_000913	3362459	T
SNP	111	505	NC_000913	3363653	T
SNP	112	506	NC_000913	3383369	T
SNP	113	507	NC_000913	3397982	T
SNP	114	508	NC_000913	3406476	T
SNP	115	509	NC_000913	3432173	A
SNP	116	510	NC_000913	3439614	A
SNP	117	511	NC_000913	3445876	A
SNP	118	512	NC_000913	3446190	A
SNP	119	513	NC_000913	3449865	A
SNP	120	514	NC_000913	3454722	C
SNP	121	515	NC_000913	3459326	A
SNP	122	516	NC_000913	3469561	A
SNP	123	517	NC_000913	3469763	A
SNP	124	518	NC_000913	3486205	A
SNP	125	519	NC_000913	3496485	A
SNP	126	520	NC_000913	3506702	A
SNP	127	521	NC_000913	3511870	A
SNP	128	522	NC_000913	3514651	A
SNP	129	523	NC_000913	3541403	A
INS	130	524	NC_000913	3560455	G
SNP	131	525	NC_000913	3564733	A
SNP	132	526	NC_000913	3573001	A
SNP	133	527	NC_000913	3575597	A
SNP	134	528	NC_000913	3587922	A
SNP	135	529	NC_000913	3587957	A
SNP	136	530	NC_000913	3595740	A
SNP	137	531	NC_000913	3602478	C
SNP	138	532	NC_000913	3603367	A
SNP	139	533	NC_000913	3647997	A
DEL	140	584,615	NC_000913	3682261	34
MOB	141	614,616	NC_000913	3737137	IS2	1	5
SNP	142	534	NC_000913	3786064	A
SNP	143	535	NC_000913	3788378	T
SNP	144	536	NC_000913	3790380	T
SNP	145	537	NC_000913	3796150	A
SNP	146	538	NC_000913	3802483	A
SNP	147	539	NC_000913	3830893	G
SNP	148	540	NC_000913	3841368	T
SNP	149	541	NC_000913	3841478	T
SNP	150	542	NC_000913	3852000	T
SNP	151	543	NC_000913	3868421	T
SNP	152	544	NC_000913	3871577	T
SNP	153	545	NC_000913	3873336	T
SNP	154	546	NC_000913	3880045	T
SNP	155	547	NC_000913	3886749	A
SNP	156	548	NC_000913	3891231	A
SNP	157	549	NC_000913	3891677	A
SNP	158	550	NC_000913	3892396	T
SNP	159	551	NC_000913	3895645	T
SNP	160	552	NC_000913	3896116	T
SNP	161	553	NC_000913	3898302	A
SNP	162	554	NC_000913	3949826	A
SNP	163	555	NC_000913	3953554	A
SNP	164	556	NC_000913	3956739	T
SNP	165	557	NC_000913	3957961	A
SNP	166	558	NC_000913	3960596	A
SNP	167	559	NC_000913	4027754	A
MOB	168	617,618	NC_000913	4123923	IS2	-1	5
MOB	169	619,620	NC_000913	4135180	IS2	-1	5
INS	170	560	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	171	561	NC_000913	4161093	T
SNP	172	562	NC_000913	4206024	A
SNP	173	563	NC_000913	4207461	A
SNP	174	564	NC_000913	4209562	A
SNP	175	565	NC_000913	4236742	T
SNP	176	566	NC_000913	4246296	T
SNP	177	567	NC_000913	4281878	T
INS	178	570,571	NC_000913	4296381	GC
SNP	179	572	NC_000913	4352327	G
SNP	180	573	NC_000913	4371696	T
SNP	181	574	NC_000913	4429371	T
MOB	182	610,611	NC_000913	4536236	IS5	1	4
SNP	183	575	NC_000913	4537366	T
DEL	184	576	NC_000913	4542683	1
RA	185	.	NC_000913	71134	0	G	A	consensus_score=107.4	frequency=1	major_base=A	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	186	.	NC_000913	557635	0	A	T	consensus_score=164.6	frequency=1	major_base=T	major_cov=18/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/30
RA	187	.	NC_000913	566173	0	C	G	bias_e_value=4216560	bias_p_value=0.908419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.7	fisher_strand_p_value=0.779033	frequency=3.276e-01	ks_quality_p_value=0.77505	major_base=C	major_cov=23/16	major_frequency=6.724e-01	minor_base=G	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=3.276e-01	polymorphism_score=64.6	prediction=polymorphism	ref_cov=23/16	total_cov=33/25
RA	188	.	NC_000913	566205	0	T	C	bias_e_value=2211960	bias_p_value=0.476546	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.7	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.173013	major_base=T	major_cov=20/18	major_frequency=6.667e-01	minor_base=C	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=3.333e-01	polymorphism_score=48.9	prediction=polymorphism	ref_cov=20/18	total_cov=30/27
RA	189	.	NC_000913	566245	0	G	A	bias_e_value=4319910	bias_p_value=0.930684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.4	fisher_strand_p_value=1	frequency=3.220e-01	ks_quality_p_value=0.651572	major_base=G	major_cov=21/19	major_frequency=6.780e-01	minor_base=A	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=3.220e-01	polymorphism_score=41.8	prediction=polymorphism	ref_cov=21/19	total_cov=31/28
RA	190	.	NC_000913	566277	0	C	T	bias_e_value=3027080	bias_p_value=0.652156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.3	fisher_strand_p_value=0.592818	frequency=2.969e-01	ks_quality_p_value=0.493527	major_base=C	major_cov=20/25	major_frequency=7.031e-01	minor_base=T	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=2.969e-01	polymorphism_score=43.8	prediction=polymorphism	ref_cov=20/25	total_cov=31/34
RA	191	.	NC_000913	566323	0	C	T	bias_e_value=2296680	bias_p_value=0.494797	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.1	fisher_strand_p_value=0.378629	frequency=2.632e-01	ks_quality_p_value=0.484901	major_base=C	major_cov=19/23	major_frequency=7.368e-01	minor_base=T	minor_cov=9/6	new_cov=9/6	polymorphism_frequency=2.632e-01	polymorphism_score=33.6	prediction=polymorphism	ref_cov=19/23	total_cov=29/29
RA	192	.	NC_000913	566326	0	T	C	bias_e_value=2301520	bias_p_value=0.495842	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.4	fisher_strand_p_value=0.54968	frequency=2.586e-01	ks_quality_p_value=0.33513	major_base=T	major_cov=20/23	major_frequency=7.414e-01	minor_base=C	minor_cov=9/6	new_cov=9/6	polymorphism_frequency=2.586e-01	polymorphism_score=38.8	prediction=polymorphism	ref_cov=20/23	total_cov=29/29
RA	193	.	NC_000913	566332	0	T	G	bias_e_value=2641140	bias_p_value=0.569009	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.2	fisher_strand_p_value=0.363004	frequency=2.414e-01	ks_quality_p_value=0.635447	major_base=T	major_cov=21/23	major_frequency=7.586e-01	minor_base=G	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=2.414e-01	polymorphism_score=37.9	prediction=polymorphism	ref_cov=21/23	total_cov=30/28
RA	194	.	NC_000913	566435	0	G	A	bias_e_value=4022250	bias_p_value=0.866557	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.1	fisher_strand_p_value=0.748422	frequency=2.203e-01	ks_quality_p_value=0.708306	major_base=G	major_cov=17/29	major_frequency=7.797e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.203e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=17/29	total_cov=23/36
RA	195	.	NC_000913	566444	0	T	C	bias_e_value=4636470	bias_p_value=0.998883	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.0	fisher_strand_p_value=1	frequency=2.381e-01	ks_quality_p_value=0.953119	major_base=T	major_cov=20/28	major_frequency=7.619e-01	minor_base=C	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=2.381e-01	polymorphism_score=33.6	prediction=polymorphism	ref_cov=20/28	total_cov=26/37
RA	196	.	NC_000913	566451	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.5	fisher_strand_p_value=1	frequency=2.576e-01	ks_quality_p_value=1	major_base=T	major_cov=22/27	major_frequency=7.424e-01	minor_base=C	minor_cov=8/9	new_cov=8/9	polymorphism_frequency=2.576e-01	polymorphism_score=32.2	prediction=polymorphism	ref_cov=22/27	total_cov=30/36
RA	197	.	NC_000913	566463	0	T	C	bias_e_value=4116240	bias_p_value=0.886805	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.8	fisher_strand_p_value=0.789988	frequency=2.714e-01	ks_quality_p_value=0.713495	major_base=T	major_cov=24/27	major_frequency=7.286e-01	minor_base=C	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=2.714e-01	polymorphism_score=52.2	prediction=polymorphism	ref_cov=24/27	total_cov=34/36
RA	198	.	NC_000913	566468	0	C	T	bias_e_value=4337800	bias_p_value=0.934539	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.2	fisher_strand_p_value=0.78805	frequency=2.754e-01	ks_quality_p_value=0.838424	major_base=C	major_cov=23/27	major_frequency=7.246e-01	minor_base=T	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=2.754e-01	polymorphism_score=47.2	prediction=polymorphism	ref_cov=23/27	total_cov=33/36
RA	199	.	NC_000913	566492	0	G	T	bias_e_value=4619550	bias_p_value=0.995238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.9	fisher_strand_p_value=1	frequency=3.188e-01	ks_quality_p_value=0.904008	major_base=G	major_cov=24/23	major_frequency=6.812e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.188e-01	polymorphism_score=64.1	prediction=polymorphism	ref_cov=24/23	total_cov=35/34
RA	200	.	NC_000913	566493	0	G	A	bias_e_value=4628050	bias_p_value=0.997069	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.4	fisher_strand_p_value=1	frequency=3.235e-01	ks_quality_p_value=0.924422	major_base=G	major_cov=23/23	major_frequency=6.765e-01	minor_base=A	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.235e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=23/23	total_cov=35/34
RA	201	.	NC_000913	566498	0	C	T	bias_e_value=3368690	bias_p_value=0.725753	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.1	fisher_strand_p_value=1	frequency=3.235e-01	ks_quality_p_value=0.358007	major_base=C	major_cov=24/22	major_frequency=6.765e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.235e-01	polymorphism_score=60.5	prediction=polymorphism	ref_cov=24/22	total_cov=35/33
RA	202	.	NC_000913	566510	0	G	C	bias_e_value=3521720	bias_p_value=0.758721	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.5	fisher_strand_p_value=0.796541	frequency=3.143e-01	ks_quality_p_value=0.491612	major_base=G	major_cov=27/21	major_frequency=6.857e-01	minor_base=C	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.143e-01	polymorphism_score=72.9	prediction=polymorphism	ref_cov=27/21	total_cov=38/32
RA	203	.	NC_000913	566513	0	C	T	bias_e_value=3170890	bias_p_value=0.683139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.7	fisher_strand_p_value=0.796541	frequency=3.143e-01	ks_quality_p_value=0.400109	major_base=C	major_cov=27/21	major_frequency=6.857e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.143e-01	polymorphism_score=59.9	prediction=polymorphism	ref_cov=27/21	total_cov=38/32
RA	204	.	NC_000913	566519	0	T	C	bias_e_value=2706940	bias_p_value=0.583185	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.8	fisher_strand_p_value=0.603923	frequency=3.235e-01	ks_quality_p_value=0.398187	major_base=T	major_cov=27/19	major_frequency=6.765e-01	minor_base=C	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.235e-01	polymorphism_score=61.9	prediction=polymorphism	ref_cov=27/19	total_cov=38/30
RA	205	.	NC_000913	566522	0	C	A	bias_e_value=1827180	bias_p_value=0.393648	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.9	fisher_strand_p_value=0.798534	frequency=3.099e-01	ks_quality_p_value=0.161829	major_base=C	major_cov=27/22	major_frequency=6.901e-01	minor_base=A	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.099e-01	polymorphism_score=63.2	prediction=polymorphism	ref_cov=27/22	total_cov=38/33
RA	206	.	NC_000913	566528	0	A	G	bias_e_value=4353620	bias_p_value=0.937947	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.1	fisher_strand_p_value=0.796987	frequency=3.188e-01	ks_quality_p_value=0.839499	major_base=A	major_cov=26/21	major_frequency=6.812e-01	minor_base=G	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.188e-01	polymorphism_score=59.0	prediction=polymorphism	ref_cov=26/21	total_cov=37/32
RA	207	.	NC_000913	566530	1	.	T	bias_e_value=832815	bias_p_value=0.179422	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.0	fisher_strand_p_value=0.796541	frequency=3.143e-01	ks_quality_p_value=0.0544309	major_base=.	major_cov=27/21	major_frequency=6.857e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.143e-01	polymorphism_score=113.4	prediction=polymorphism	ref_cov=27/21	total_cov=38/32
RA	208	.	NC_000913	566532	0	A	T	bias_e_value=813052	bias_p_value=0.175164	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.5	fisher_strand_p_value=0.610567	frequency=3.188e-01	ks_quality_p_value=0.0687993	major_base=A	major_cov=27/20	major_frequency=6.812e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.188e-01	polymorphism_score=61.6	prediction=polymorphism	ref_cov=27/20	total_cov=38/32
RA	209	.	NC_000913	566535	0	T	.	bias_e_value=308365	bias_p_value=0.0664343	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.7	fisher_strand_p_value=0.603923	frequency=3.235e-01	ks_quality_p_value=0.0203808	major_base=T	major_cov=27/19	major_frequency=6.765e-01	minor_base=.	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.235e-01	polymorphism_score=86.7	prediction=polymorphism	ref_cov=27/19	total_cov=38/30
RA	210	.	NC_000913	566536	0	G	A	bias_e_value=838887	bias_p_value=0.18073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.9	fisher_strand_p_value=0.440198	frequency=3.382e-01	ks_quality_p_value=0.0994417	major_base=G	major_cov=27/18	major_frequency=6.618e-01	minor_base=A	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=3.382e-01	polymorphism_score=61.6	prediction=polymorphism	ref_cov=27/18	total_cov=38/30
RA	211	.	NC_000913	566543	0	A	T	bias_e_value=3881270	bias_p_value=0.836183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.2	fisher_strand_p_value=0.602989	frequency=3.188e-01	ks_quality_p_value=0.804863	major_base=A	major_cov=28/19	major_frequency=6.812e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.188e-01	polymorphism_score=67.7	prediction=polymorphism	ref_cov=28/19	total_cov=39/30
RA	212	.	NC_000913	566547	0	C	A	bias_e_value=551379	bias_p_value=0.118789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.5	fisher_strand_p_value=0.444361	frequency=3.286e-01	ks_quality_p_value=0.057219	major_base=C	major_cov=28/19	major_frequency=6.714e-01	minor_base=A	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=3.286e-01	polymorphism_score=60.1	prediction=polymorphism	ref_cov=28/19	total_cov=39/31
RA	213	.	NC_000913	566565	0	A	G	bias_e_value=3091960	bias_p_value=0.666133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.3	fisher_strand_p_value=0.334481	frequency=3.611e-01	ks_quality_p_value=0.909253	major_base=A	major_cov=27/19	major_frequency=6.389e-01	minor_base=G	minor_cov=12/14	new_cov=12/14	polymorphism_frequency=3.611e-01	polymorphism_score=73.0	prediction=polymorphism	ref_cov=27/19	total_cov=39/33
RA	214	.	NC_000913	566570	0	A	C	bias_e_value=3438150	bias_p_value=0.740716	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.6	fisher_strand_p_value=0.469614	frequency=3.836e-01	ks_quality_p_value=0.793993	major_base=A	major_cov=26/19	major_frequency=6.164e-01	minor_base=C	minor_cov=13/15	new_cov=13/15	polymorphism_frequency=3.836e-01	polymorphism_score=79.8	prediction=polymorphism	ref_cov=26/19	total_cov=39/35
RA	215	.	NC_000913	566597	0	T	C	bias_e_value=2744200	bias_p_value=0.591212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.7	fisher_strand_p_value=0.622727	frequency=4.118e-01	ks_quality_p_value=0.395284	major_base=T	major_cov=22/18	major_frequency=5.882e-01	minor_base=C	minor_cov=13/15	new_cov=13/15	polymorphism_frequency=4.118e-01	polymorphism_score=84.3	prediction=polymorphism	ref_cov=22/18	total_cov=35/33
RA	216	.	NC_000913	566651	0	T	C	bias_e_value=2255040	bias_p_value=0.485827	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.1	fisher_strand_p_value=0.327127	frequency=4.058e-01	ks_quality_p_value=0.545201	major_base=T	major_cov=22/19	major_frequency=5.942e-01	minor_base=C	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.058e-01	polymorphism_score=86.1	prediction=polymorphism	ref_cov=22/19	total_cov=33/36
RA	217	.	NC_000913	566728	0	G	T	bias_e_value=786821	bias_p_value=0.169513	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.7	fisher_strand_p_value=0.536138	frequency=2.917e-01	ks_quality_p_value=0.0750474	major_base=G	major_cov=16/18	major_frequency=7.083e-01	minor_base=T	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=2.917e-01	polymorphism_score=39.0	prediction=polymorphism	ref_cov=16/18	total_cov=21/27
RA	218	.	NC_000913	566740	0	A	G	bias_e_value=3524720	bias_p_value=0.759367	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.1	fisher_strand_p_value=0.51235	frequency=2.708e-01	ks_quality_p_value=0.765648	major_base=A	major_cov=16/19	major_frequency=7.292e-01	minor_base=G	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.708e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=16/19	total_cov=20/29
RA	219	.	NC_000913	566742	0	A	C	bias_e_value=2899180	bias_p_value=0.624601	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.0	fisher_strand_p_value=0.516212	frequency=2.653e-01	ks_quality_p_value=0.524643	major_base=A	major_cov=16/20	major_frequency=7.347e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.653e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=16/20	total_cov=20/29
RA	220	.	NC_000913	566756	0	G	C	bias_e_value=1547990	bias_p_value=0.3335	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.3	fisher_strand_p_value=0.740828	frequency=2.653e-01	ks_quality_p_value=0.13689	major_base=G	major_cov=15/21	major_frequency=7.347e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.653e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=15/21	total_cov=19/30
RA	221	.	NC_000913	566770	0	C	A	bias_e_value=1444250	bias_p_value=0.311151	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.8	fisher_strand_p_value=0.515204	frequency=2.600e-01	ks_quality_p_value=0.178279	major_base=C	major_cov=17/20	major_frequency=7.400e-01	minor_base=A	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=2.600e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=17/20	total_cov=21/29
RA	222	.	NC_000913	568052	0	T	C	bias_e_value=3604100	bias_p_value=0.776469	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.1	fisher_strand_p_value=0.735444	frequency=2.667e-01	ks_quality_p_value=0.558881	major_base=T	major_cov=14/19	major_frequency=7.333e-01	minor_base=C	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.667e-01	polymorphism_score=29.6	prediction=polymorphism	ref_cov=14/19	total_cov=18/27
RA	223	.	NC_000913	568067	0	G	A	bias_e_value=1802980	bias_p_value=0.388436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.1	fisher_strand_p_value=0.475707	frequency=2.368e-01	ks_quality_p_value=0.266322	major_base=G	major_cov=14/15	major_frequency=7.632e-01	minor_base=A	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.368e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=14/15	total_cov=17/21
RA	224	.	NC_000913	568076	0	A	T	bias_e_value=1815390	bias_p_value=0.39111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.2	fisher_strand_p_value=0.672174	frequency=2.059e-01	ks_quality_p_value=0.19041	major_base=A	major_cov=12/15	major_frequency=7.941e-01	minor_base=T	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.059e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=12/15	total_cov=14/20
RA	225	.	NC_000913	568077	0	A	C	bias_e_value=2790070	bias_p_value=0.601094	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.9	fisher_strand_p_value=0.672174	frequency=2.059e-01	ks_quality_p_value=0.376802	major_base=A	major_cov=12/15	major_frequency=7.941e-01	minor_base=C	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.059e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=12/15	total_cov=14/20
RA	226	.	NC_000913	568079	0	C	T	bias_e_value=220707	bias_p_value=0.0475493	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.7	fisher_strand_p_value=0.672174	frequency=2.059e-01	ks_quality_p_value=0.0121867	major_base=C	major_cov=12/15	major_frequency=7.941e-01	minor_base=T	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.059e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=12/15	total_cov=14/20
RA	227	.	NC_000913	568085	0	C	T	bias_e_value=3461720	bias_p_value=0.745796	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.6	fisher_strand_p_value=0.672174	frequency=2.059e-01	ks_quality_p_value=0.562438	major_base=C	major_cov=12/15	major_frequency=7.941e-01	minor_base=T	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.059e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=12/15	total_cov=14/20
RA	228	.	NC_000913	568088	0	T	C	bias_e_value=4044920	bias_p_value=0.87144	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.4	fisher_strand_p_value=0.67603	frequency=2.000e-01	ks_quality_p_value=0.795669	major_base=T	major_cov=12/16	major_frequency=8.000e-01	minor_base=C	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.000e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=12/16	total_cov=14/21
RA	229	.	NC_000913	578331	0	G	T	bias_e_value=1603850	bias_p_value=0.345535	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.0	fisher_strand_p_value=0.112942	frequency=3.182e-01	ks_quality_p_value=0.945004	major_base=G	major_cov=23/22	major_frequency=6.818e-01	minor_base=T	minor_cov=6/15	new_cov=6/15	polymorphism_frequency=3.182e-01	polymorphism_score=39.9	prediction=polymorphism	ref_cov=23/22	total_cov=29/38
RA	230	.	NC_000913	578427	0	G	C	bias_e_value=2747650	bias_p_value=0.591956	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.7	fisher_strand_p_value=0.435307	frequency=4.062e-01	ks_quality_p_value=0.566691	major_base=G	major_cov=16/22	major_frequency=5.938e-01	minor_base=C	minor_cov=8/18	new_cov=8/18	polymorphism_frequency=4.062e-01	polymorphism_score=86.9	prediction=polymorphism	ref_cov=16/22	total_cov=24/40
RA	231	.	NC_000913	578571	0	C	T	bias_e_value=4184050	bias_p_value=0.901413	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.4	fisher_strand_p_value=0.591855	frequency=3.793e-01	ks_quality_p_value=0.997217	major_base=C	major_cov=18/18	major_frequency=6.207e-01	minor_base=T	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=3.793e-01	polymorphism_score=59.7	prediction=polymorphism	ref_cov=18/18	total_cov=27/31
RA	232	.	NC_000913	578574	0	A	C	bias_e_value=982966	bias_p_value=0.211771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.8	fisher_strand_p_value=0.786658	frequency=3.793e-01	ks_quality_p_value=0.0687133	major_base=A	major_cov=17/19	major_frequency=6.207e-01	minor_base=C	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=3.793e-01	polymorphism_score=68.7	prediction=polymorphism	ref_cov=17/19	total_cov=27/32
RA	233	.	NC_000913	578605	0	T	G	bias_e_value=1034810	bias_p_value=0.22294	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.6	fisher_strand_p_value=0.588874	frequency=3.898e-01	ks_quality_p_value=0.0983715	major_base=T	major_cov=16/20	major_frequency=6.102e-01	minor_base=G	minor_cov=8/15	new_cov=8/15	polymorphism_frequency=3.898e-01	polymorphism_score=70.0	prediction=polymorphism	ref_cov=16/20	total_cov=24/35
RA	234	.	NC_000913	578729	0	A	G	bias_e_value=889211	bias_p_value=0.191572	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.4	fisher_strand_p_value=0.461231	frequency=4.462e-01	ks_quality_p_value=0.102515	major_base=A	major_cov=15/21	major_frequency=5.538e-01	minor_base=G	minor_cov=15/14	new_cov=15/14	polymorphism_frequency=4.462e-01	polymorphism_score=88.7	prediction=polymorphism	ref_cov=15/21	total_cov=31/35
RA	235	.	NC_000913	578809	0	T	C	bias_e_value=2628770	bias_p_value=0.566344	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.6	fisher_strand_p_value=0.301467	frequency=4.746e-01	ks_quality_p_value=0.759147	major_base=T	major_cov=13/18	major_frequency=5.254e-01	minor_base=C	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=4.746e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=13/18	total_cov=29/31
RA	236	.	NC_000913	578811	0	T	G	bias_e_value=2352800	bias_p_value=0.50689	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.6	fisher_strand_p_value=0.193989	frequency=4.500e-01	ks_quality_p_value=0.983637	major_base=T	major_cov=13/20	major_frequency=5.500e-01	minor_base=G	minor_cov=16/11	new_cov=16/11	polymorphism_frequency=4.500e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=13/20	total_cov=29/31
RA	237	.	NC_000913	578831	0	T	C	bias_e_value=662549	bias_p_value=0.14274	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.7	fisher_strand_p_value=0.292372	frequency=5.000e-01	ks_quality_p_value=0.110042	major_base=C	major_cov=18/11	major_frequency=5.000e-01	minor_base=T	minor_cov=13/16	new_cov=18/11	polymorphism_frequency=5.000e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=13/16	total_cov=31/27
RA	238	.	NC_000913	579004	0	C	T	bias_e_value=4093480	bias_p_value=0.881903	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.6	fisher_strand_p_value=0.560805	frequency=4.565e-01	ks_quality_p_value=0.990029	major_base=C	major_cov=13/12	major_frequency=5.435e-01	minor_base=T	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=4.565e-01	polymorphism_score=55.1	prediction=polymorphism	ref_cov=13/12	total_cov=26/20
RA	239	.	NC_000913	579099	0	A	.	bias_e_value=2389750	bias_p_value=0.514848	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.2	fisher_strand_p_value=0.778453	frequency=5.800e-01	ks_quality_p_value=0.251339	major_base=.	major_cov=14/15	major_frequency=5.800e-01	minor_base=A	minor_cov=9/12	new_cov=14/15	polymorphism_frequency=5.800e-01	polymorphism_score=106.1	prediction=polymorphism	ref_cov=9/12	total_cov=23/27
RA	240	.	NC_000913	579127	0	T	C	bias_e_value=3160050	bias_p_value=0.680804	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.6	fisher_strand_p_value=0.562663	frequency=5.714e-01	ks_quality_p_value=0.562801	major_base=C	major_cov=14/14	major_frequency=5.714e-01	minor_base=T	minor_cov=8/13	new_cov=14/14	polymorphism_frequency=5.714e-01	polymorphism_score=58.6	prediction=polymorphism	ref_cov=8/13	total_cov=22/27
RA	241	.	NC_000913	579134	0	T	C	bias_e_value=4113600	bias_p_value=0.886236	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.1	fisher_strand_p_value=0.562663	frequency=5.714e-01	ks_quality_p_value=1	major_base=C	major_cov=14/14	major_frequency=5.714e-01	minor_base=T	minor_cov=8/13	new_cov=14/14	polymorphism_frequency=5.714e-01	polymorphism_score=52.5	prediction=polymorphism	ref_cov=8/13	total_cov=22/27
RA	242	.	NC_000913	579146	0	A	G	bias_e_value=4518830	bias_p_value=0.97354	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.5	fisher_strand_p_value=0.778955	frequency=6.000e-01	ks_quality_p_value=1	major_base=G	major_cov=15/15	major_frequency=6.000e-01	minor_base=A	minor_cov=9/11	new_cov=15/15	polymorphism_frequency=6.000e-01	polymorphism_score=51.2	prediction=polymorphism	ref_cov=9/11	total_cov=24/26
RA	243	.	NC_000913	579271	0	G	A	bias_e_value=4147160	bias_p_value=0.893466	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.1	fisher_strand_p_value=0.605644	frequency=6.129e-01	ks_quality_p_value=0.950207	major_base=A	major_cov=19/19	major_frequency=6.129e-01	minor_base=G	minor_cov=10/14	new_cov=19/19	polymorphism_frequency=6.129e-01	polymorphism_score=65.6	prediction=polymorphism	ref_cov=10/14	total_cov=29/33
RA	244	.	NC_000913	579285	0	T	C	bias_e_value=1501840	bias_p_value=0.323558	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.593883	frequency=6.379e-01	ks_quality_p_value=0.163514	major_base=C	major_cov=17/20	major_frequency=6.379e-01	minor_base=T	minor_cov=8/13	new_cov=17/20	polymorphism_frequency=6.379e-01	polymorphism_score=51.7	prediction=polymorphism	ref_cov=8/13	total_cov=25/33
RA	245	.	NC_000913	579385	0	A	G	bias_e_value=120388	bias_p_value=0.0259365	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.1	fisher_strand_p_value=0.0850155	frequency=6.415e-01	ks_quality_p_value=0.0467322	major_base=G	major_cov=18/16	major_frequency=6.415e-01	minor_base=A	minor_cov=5/14	new_cov=18/16	polymorphism_frequency=6.415e-01	polymorphism_score=49.9	prediction=polymorphism	ref_cov=5/14	total_cov=23/30
RA	246	.	NC_000913	579457	0	A	G	bias_e_value=1089670	bias_p_value=0.234759	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.8	fisher_strand_p_value=0.0806517	frequency=6.604e-01	ks_quality_p_value=0.770345	major_base=G	major_cov=17/18	major_frequency=6.604e-01	minor_base=A	minor_cov=4/14	new_cov=17/18	polymorphism_frequency=6.604e-01	polymorphism_score=47.1	prediction=polymorphism	ref_cov=4/14	total_cov=21/32
RA	247	.	NC_000913	579502	0	A	G	bias_e_value=193848	bias_p_value=0.0417627	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.8	fisher_strand_p_value=0.758797	frequency=6.222e-01	ks_quality_p_value=0.00923304	major_base=G	major_cov=14/14	major_frequency=6.222e-01	minor_base=A	minor_cov=7/10	new_cov=14/14	polymorphism_frequency=6.222e-01	polymorphism_score=46.2	prediction=polymorphism	ref_cov=7/10	total_cov=21/24
RA	248	.	NC_000913	579540	0	T	C	bias_e_value=686781	bias_p_value=0.147961	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.1	fisher_strand_p_value=0.773287	frequency=5.918e-01	ks_quality_p_value=0.0435836	major_base=C	major_cov=15/14	major_frequency=5.918e-01	minor_base=T	minor_cov=9/11	new_cov=15/14	polymorphism_frequency=5.918e-01	polymorphism_score=57.2	prediction=polymorphism	ref_cov=9/11	total_cov=24/25
RA	249	.	NC_000913	579651	0	C	T	bias_e_value=4000330	bias_p_value=0.861833	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.8	fisher_strand_p_value=0.553604	frequency=6.327e-01	ks_quality_p_value=0.944266	major_base=T	major_cov=15/16	major_frequency=6.327e-01	minor_base=C	minor_cov=11/7	new_cov=15/16	polymorphism_frequency=6.327e-01	polymorphism_score=48.4	prediction=polymorphism	ref_cov=11/7	total_cov=26/23
RA	250	.	NC_000913	579671	0	T	C	bias_e_value=3761240	bias_p_value=0.810323	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.7	fisher_strand_p_value=0.54305	frequency=6.000e-01	ks_quality_p_value=0.83095	major_base=C	major_cov=15/12	major_frequency=6.000e-01	minor_base=T	minor_cov=12/6	new_cov=15/12	polymorphism_frequency=6.000e-01	polymorphism_score=46.9	prediction=polymorphism	ref_cov=12/6	total_cov=27/18
RA	251	.	NC_000913	579717	0	A	C	bias_e_value=3412090	bias_p_value=0.735102	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.2	fisher_strand_p_value=0.377148	frequency=6.000e-01	ks_quality_p_value=0.973686	major_base=C	major_cov=16/14	major_frequency=6.000e-01	minor_base=A	minor_cov=14/6	new_cov=16/14	polymorphism_frequency=6.000e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=14/6	total_cov=30/20
RA	252	.	NC_000913	579811	0	C	T	bias_e_value=4433840	bias_p_value=0.955228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.0	fisher_strand_p_value=0.760009	frequency=7.407e-01	ks_quality_p_value=0.942213	major_base=T	major_cov=20/20	major_frequency=7.407e-01	minor_base=C	minor_cov=8/6	new_cov=20/20	polymorphism_frequency=7.407e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=8/6	total_cov=28/26
RA	253	.	NC_000913	580020	0	G	A	bias_e_value=4165730	bias_p_value=0.897466	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.2	fisher_strand_p_value=0.582811	frequency=5.472e-01	ks_quality_p_value=1	major_base=A	major_cov=15/14	major_frequency=5.472e-01	minor_base=G	minor_cov=10/14	new_cov=15/14	polymorphism_frequency=5.472e-01	polymorphism_score=67.6	prediction=polymorphism	ref_cov=10/14	total_cov=26/28
RA	254	.	NC_000913	580115	0	C	T	bias_e_value=2077260	bias_p_value=0.447525	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.1	fisher_strand_p_value=1	frequency=4.894e-01	ks_quality_p_value=0.156913	major_base=C	major_cov=11/13	major_frequency=5.106e-01	minor_base=T	minor_cov=10/13	new_cov=10/13	polymorphism_frequency=4.894e-01	polymorphism_score=61.6	prediction=polymorphism	ref_cov=11/13	total_cov=21/26
RA	255	.	NC_000913	580119	0	A	G	bias_e_value=2362080	bias_p_value=0.508888	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.5	fisher_strand_p_value=0.770362	frequency=4.681e-01	ks_quality_p_value=0.249263	major_base=A	major_cov=12/13	major_frequency=5.319e-01	minor_base=G	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=4.681e-01	polymorphism_score=68.9	prediction=polymorphism	ref_cov=12/13	total_cov=21/26
RA	256	.	NC_000913	580120	0	C	T	bias_e_value=2666710	bias_p_value=0.574518	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.2	fisher_strand_p_value=0.770362	frequency=4.681e-01	ks_quality_p_value=0.304333	major_base=C	major_cov=12/13	major_frequency=5.319e-01	minor_base=T	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=4.681e-01	polymorphism_score=58.7	prediction=polymorphism	ref_cov=12/13	total_cov=21/26
RA	257	.	NC_000913	580302	0	C	T	bias_e_value=15527.6	bias_p_value=0.00334528	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.7	fisher_strand_p_value=0.208121	frequency=4.667e-01	ks_quality_p_value=0.00180918	major_base=C	major_cov=18/14	major_frequency=5.333e-01	minor_base=T	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.667e-01	polymorphism_score=84.0	prediction=polymorphism	ref_cov=18/14	total_cov=29/31
RA	258	.	NC_000913	580437	0	A	C	bias_e_value=4525440	bias_p_value=0.974963	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.8	fisher_strand_p_value=1	frequency=3.784e-01	ks_quality_p_value=0.784739	major_base=A	major_cov=12/11	major_frequency=6.216e-01	minor_base=C	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.784e-01	polymorphism_score=41.6	prediction=polymorphism	ref_cov=12/11	total_cov=20/17
RA	259	.	NC_000913	580746	0	C	T	bias_e_value=3654690	bias_p_value=0.787369	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.5	fisher_strand_p_value=0.672769	frequency=2.800e-01	ks_quality_p_value=0.629483	major_base=C	major_cov=10/8	major_frequency=7.200e-01	minor_base=T	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=2.800e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=10/8	total_cov=13/12
RA	260	.	NC_000913	580830	0	T	A	bias_e_value=3316740	bias_p_value=0.71456	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.0	fisher_strand_p_value=0.738616	frequency=3.514e-01	ks_quality_p_value=0.470162	major_base=T	major_cov=13/11	major_frequency=6.486e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.514e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=13/11	total_cov=21/16
RA	261	.	NC_000913	580831	0	G	A	bias_e_value=3115470	bias_p_value=0.671199	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.6	fisher_strand_p_value=0.738616	frequency=3.514e-01	ks_quality_p_value=0.417549	major_base=G	major_cov=13/11	major_frequency=6.486e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.514e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=13/11	total_cov=21/16
RA	262	.	NC_000913	581042	0	T	G	bias_e_value=3470290	bias_p_value=0.747641	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.9	fisher_strand_p_value=0.769849	frequency=3.462e-01	ks_quality_p_value=0.493549	major_base=T	major_cov=18/16	major_frequency=6.538e-01	minor_base=G	minor_cov=11/7	new_cov=11/7	polymorphism_frequency=3.462e-01	polymorphism_score=51.6	prediction=polymorphism	ref_cov=18/16	total_cov=29/23
RA	263	.	NC_000913	581056	0	A	G	bias_e_value=3404500	bias_p_value=0.733468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.7	fisher_strand_p_value=0.569372	frequency=3.396e-01	ks_quality_p_value=0.642103	major_base=A	major_cov=18/17	major_frequency=6.604e-01	minor_base=G	minor_cov=11/7	new_cov=11/7	polymorphism_frequency=3.396e-01	polymorphism_score=43.5	prediction=polymorphism	ref_cov=18/17	total_cov=29/24
RA	264	.	NC_000913	581073	0	G	A	bias_e_value=4204400	bias_p_value=0.905799	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.6	fisher_strand_p_value=0.766637	frequency=3.200e-01	ks_quality_p_value=0.780865	major_base=G	major_cov=17/17	major_frequency=6.800e-01	minor_base=A	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.200e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=17/17	total_cov=26/24
RA	265	.	NC_000913	581118	0	T	C	bias_e_value=4343870	bias_p_value=0.935847	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.4	fisher_strand_p_value=1	frequency=2.609e-01	ks_quality_p_value=0.663894	major_base=T	major_cov=17/17	major_frequency=7.391e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.609e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=17/17	total_cov=23/23
RA	266	.	NC_000913	581127	0	G	A	bias_e_value=3032270	bias_p_value=0.653274	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=1	frequency=2.553e-01	ks_quality_p_value=0.293483	major_base=G	major_cov=17/18	major_frequency=7.447e-01	minor_base=A	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.553e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=17/18	total_cov=23/24
RA	267	.	NC_000913	612046	0	G	A	bias_e_value=3183350	bias_p_value=0.685822	consensus_score=114.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.321058	major_base=A	major_cov=15/19	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=15/19	polymorphism_frequency=9.714e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=15/21
RA	268	.	NC_000913	621783	0	G	A	consensus_score=170.2	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	269	.	NC_000913	631633	0	G	A	bias_e_value=3765420	bias_p_value=0.811223	consensus_score=134.9	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/23	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=18/23	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	270	.	NC_000913	642784	0	G	A	bias_e_value=4633140	bias_p_value=0.998165	consensus_score=145.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.940037	major_base=A	major_cov=27/18	major_frequency=9.783e-01	minor_base=C	minor_cov=1/0	new_cov=27/18	polymorphism_frequency=9.783e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	271	.	NC_000913	643506	0	G	A	consensus_score=121.5	frequency=1	major_base=A	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	272	.	NC_000913	646861	0	G	A	consensus_score=120.0	frequency=1	major_base=A	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	273	.	NC_000913	657095	0	C	T	consensus_score=88.8	frequency=1	major_base=T	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	274	.	NC_000913	667992	0	C	T	consensus_score=124.7	frequency=1	major_base=T	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	275	.	NC_000913	726344	0	G	A	bias_e_value=24.7504	bias_p_value=5.33225e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.1	fisher_strand_p_value=3.3518e-07	frequency=2.373e-01	ks_quality_p_value=1	major_base=G	major_cov=11/34	major_frequency=7.627e-01	minor_base=A	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.373e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=11/34	total_cov=25/34
RA	276	.	NC_000913	949985	0	G	A	consensus_score=60.8	frequency=1	major_base=A	major_cov=3/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/15
RA	277	.	NC_000913	987152	0	G	T	consensus_score=62.1	frequency=1	major_base=T	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	278	.	NC_000913	1196220	0	C	T	consensus_score=54.2	frequency=1	major_base=T	major_cov=3/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/17
RA	279	.	NC_000913	1196232	0	C	T	consensus_score=50.8	frequency=1	major_base=T	major_cov=2/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/17
RA	280	.	NC_000913	1196245	0	T	C	consensus_score=48.8	frequency=1	major_base=C	major_cov=2/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/16
RA	281	.	NC_000913	1196247	0	A	G	consensus_score=47.6	frequency=1	major_base=G	major_cov=2/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/16
RA	282	.	NC_000913	1196277	0	C	T	consensus_score=25.2	frequency=1	major_base=T	major_cov=2/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/11
RA	283	.	NC_000913	1196280	0	G	C	consensus_score=28.3	frequency=1	major_base=C	major_cov=2/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/11
RA	284	.	NC_000913	1196283	0	A	G	consensus_score=26.9	frequency=1	major_base=G	major_cov=2/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/11
RA	285	.	NC_000913	1196292	0	C	T	consensus_score=24.0	frequency=1	major_base=T	major_cov=2/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/10
RA	286	.	NC_000913	1196304	0	G	A	consensus_score=19.5	frequency=1	major_base=A	major_cov=1/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/10
RA	287	.	NC_000913	1196316	0	T	A	consensus_score=11.6	frequency=1	major_base=A	major_cov=0/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/8
RA	288	.	NC_000913	1196325	0	A	G	consensus_score=11.2	frequency=1	major_base=G	major_cov=0/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/8
RA	289	.	NC_000913	1222596	0	G	A	bias_e_value=1110.8	bias_p_value=0.000239311	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.6	fisher_strand_p_value=2.02696e-05	frequency=2.963e-01	ks_quality_p_value=1	major_base=G	major_cov=17/2	major_frequency=7.037e-01	minor_base=A	minor_cov=0/8	new_cov=0/8	polymorphism_frequency=2.963e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=17/2	total_cov=17/10
RA	290	.	NC_000913	1290881	0	C	T	consensus_score=86.3	frequency=1	major_base=T	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	291	.	NC_000913	1337394	0	A	G	consensus_score=143.0	frequency=1	major_base=G	major_cov=14/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/27
RA	292	.	NC_000913	1353673	0	G	A	consensus_score=128.9	frequency=1	major_base=A	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	293	.	NC_000913	1353758	0	T	A	bias_e_value=4641230	bias_p_value=0.99991	consensus_score=113.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986577	major_base=A	major_cov=21/15	major_frequency=9.730e-01	minor_base=T	minor_cov=1/0	new_cov=21/15	polymorphism_frequency=9.730e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=22/15
RA	294	.	NC_000913	1423244	0	G	C	bias_e_value=843742	bias_p_value=0.181776	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.0	fisher_strand_p_value=0.224118	frequency=2.456e-01	ks_quality_p_value=0.19681	major_base=G	major_cov=16/27	major_frequency=7.544e-01	minor_base=C	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.456e-01	polymorphism_score=45.4	prediction=polymorphism	ref_cov=16/27	total_cov=25/33
RA	295	.	NC_000913	1423272	0	C	T	bias_e_value=1293520	bias_p_value=0.278677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.5	fisher_strand_p_value=0.433091	frequency=3.382e-01	ks_quality_p_value=0.181638	major_base=C	major_cov=16/29	major_frequency=6.618e-01	minor_base=T	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=3.382e-01	polymorphism_score=56.3	prediction=polymorphism	ref_cov=16/29	total_cov=27/41
RA	296	.	NC_000913	1423273	0	G	A	bias_e_value=1689470	bias_p_value=0.36398	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.2	fisher_strand_p_value=0.303583	frequency=3.333e-01	ks_quality_p_value=0.379198	major_base=G	major_cov=16/28	major_frequency=6.667e-01	minor_base=A	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.333e-01	polymorphism_score=54.7	prediction=polymorphism	ref_cov=16/28	total_cov=27/40
RA	297	.	NC_000913	1423283	0	A	C	bias_e_value=4051310	bias_p_value=0.872815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.1	fisher_strand_p_value=0.597474	frequency=3.188e-01	ks_quality_p_value=0.904008	major_base=A	major_cov=17/30	major_frequency=6.812e-01	minor_base=C	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=3.188e-01	polymorphism_score=57.4	prediction=polymorphism	ref_cov=17/30	total_cov=27/42
RA	298	.	NC_000913	1423284	0	A	C	bias_e_value=3560630	bias_p_value=0.767104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.3	fisher_strand_p_value=0.445675	frequency=3.478e-01	ks_quality_p_value=0.898956	major_base=A	major_cov=16/29	major_frequency=6.522e-01	minor_base=C	minor_cov=11/13	new_cov=11/13	polymorphism_frequency=3.478e-01	polymorphism_score=54.5	prediction=polymorphism	ref_cov=16/29	total_cov=27/42
RA	299	.	NC_000913	1423338	0	G	C	bias_e_value=524795	bias_p_value=0.113062	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.9	fisher_strand_p_value=0.449834	frequency=4.265e-01	ks_quality_p_value=0.0530844	major_base=G	major_cov=13/26	major_frequency=5.735e-01	minor_base=C	minor_cov=13/16	new_cov=13/16	polymorphism_frequency=4.265e-01	polymorphism_score=103.7	prediction=polymorphism	ref_cov=13/26	total_cov=26/42
RA	300	.	NC_000913	1423404	0	G	T	bias_e_value=3281820	bias_p_value=0.707037	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.8	fisher_strand_p_value=0.619187	frequency=4.493e-01	ks_quality_p_value=0.549468	major_base=G	major_cov=13/25	major_frequency=5.507e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=4.493e-01	polymorphism_score=74.2	prediction=polymorphism	ref_cov=13/25	total_cov=26/43
RA	301	.	NC_000913	1428945	0	C	T	bias_e_value=844211	bias_p_value=0.181877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.9	fisher_strand_p_value=0.105911	frequency=2.549e-01	ks_quality_p_value=0.416775	major_base=C	major_cov=20/18	major_frequency=7.451e-01	minor_base=T	minor_cov=3/10	new_cov=3/10	polymorphism_frequency=2.549e-01	polymorphism_score=28.5	prediction=polymorphism	ref_cov=20/18	total_cov=23/28
RA	302	.	NC_000913	1428954	0	T	A	bias_e_value=2165870	bias_p_value=0.466616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.5	fisher_strand_p_value=0.197734	frequency=2.364e-01	ks_quality_p_value=0.846623	major_base=T	major_cov=20/22	major_frequency=7.636e-01	minor_base=A	minor_cov=3/10	new_cov=3/10	polymorphism_frequency=2.364e-01	polymorphism_score=26.8	prediction=polymorphism	ref_cov=20/22	total_cov=23/32
RA	303	.	NC_000913	1428963	0	G	T	bias_e_value=1562810	bias_p_value=0.336693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.0	fisher_strand_p_value=0.118254	frequency=2.456e-01	ks_quality_p_value=0.869408	major_base=G	major_cov=21/22	major_frequency=7.544e-01	minor_base=T	minor_cov=3/11	new_cov=3/11	polymorphism_frequency=2.456e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=21/22	total_cov=24/33
RA	304	.	NC_000913	1428966	0	T	G	bias_e_value=807567	bias_p_value=0.173983	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.7	fisher_strand_p_value=0.19882	frequency=2.407e-01	ks_quality_p_value=0.209407	major_base=T	major_cov=19/22	major_frequency=7.593e-01	minor_base=G	minor_cov=3/10	new_cov=3/10	polymorphism_frequency=2.407e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=19/22	total_cov=23/33
RA	305	.	NC_000913	1428978	0	G	A	bias_e_value=2205070	bias_p_value=0.475061	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.9	fisher_strand_p_value=0.192472	frequency=3.594e-01	ks_quality_p_value=0.89451	major_base=G	major_cov=20/21	major_frequency=6.406e-01	minor_base=A	minor_cov=7/16	new_cov=7/16	polymorphism_frequency=3.594e-01	polymorphism_score=55.7	prediction=polymorphism	ref_cov=20/21	total_cov=27/39
RA	306	.	NC_000913	1429021	0	T	A	bias_e_value=1717440	bias_p_value=0.370007	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.6	fisher_strand_p_value=0.46166	frequency=4.412e-01	ks_quality_p_value=0.255429	major_base=T	major_cov=18/20	major_frequency=5.588e-01	minor_base=A	minor_cov=11/19	new_cov=11/19	polymorphism_frequency=4.412e-01	polymorphism_score=94.3	prediction=polymorphism	ref_cov=18/20	total_cov=29/39
RA	307	.	NC_000913	1429022	0	T	A	bias_e_value=2288270	bias_p_value=0.492987	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.6	fisher_strand_p_value=0.32264	frequency=4.265e-01	ks_quality_p_value=0.565743	major_base=T	major_cov=19/20	major_frequency=5.735e-01	minor_base=A	minor_cov=10/19	new_cov=10/19	polymorphism_frequency=4.265e-01	polymorphism_score=79.6	prediction=polymorphism	ref_cov=19/20	total_cov=29/39
RA	308	.	NC_000913	1429024	0	A	C	bias_e_value=2729450	bias_p_value=0.588035	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.0	fisher_strand_p_value=0.31813	frequency=4.394e-01	ks_quality_p_value=0.766651	major_base=A	major_cov=18/19	major_frequency=5.606e-01	minor_base=C	minor_cov=10/19	new_cov=10/19	polymorphism_frequency=4.394e-01	polymorphism_score=87.1	prediction=polymorphism	ref_cov=18/19	total_cov=28/39
RA	309	.	NC_000913	1429027	0	C	T	bias_e_value=877903	bias_p_value=0.189136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.2	fisher_strand_p_value=0.217463	frequency=4.000e-01	ks_quality_p_value=0.213769	major_base=C	major_cov=21/21	major_frequency=6.000e-01	minor_base=T	minor_cov=9/19	new_cov=9/19	polymorphism_frequency=4.000e-01	polymorphism_score=76.6	prediction=polymorphism	ref_cov=21/21	total_cov=30/40
RA	310	.	NC_000913	1429069	0	T	A	bias_e_value=166282	bias_p_value=0.0358238	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.3	fisher_strand_p_value=0.815	frequency=4.800e-01	ks_quality_p_value=0.00715338	major_base=T	major_cov=17/22	major_frequency=5.200e-01	minor_base=A	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.800e-01	polymorphism_score=113.3	prediction=polymorphism	ref_cov=17/22	total_cov=31/44
RA	311	.	NC_000913	1429072	0	A	C	bias_e_value=247935	bias_p_value=0.0534152	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.4	fisher_strand_p_value=0.64496	frequency=4.675e-01	ks_quality_p_value=0.0146227	major_base=A	major_cov=19/22	major_frequency=5.325e-01	minor_base=C	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.675e-01	polymorphism_score=118.4	prediction=polymorphism	ref_cov=19/22	total_cov=33/44
RA	312	.	NC_000913	1429111	0	A	C	bias_e_value=4575830	bias_p_value=0.98582	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.1	fisher_strand_p_value=0.83639	frequency=5.319e-01	ks_quality_p_value=1	major_base=C	major_cov=26/24	major_frequency=5.319e-01	minor_base=A	minor_cov=21/23	new_cov=26/24	polymorphism_frequency=5.319e-01	polymorphism_score=121.5	prediction=polymorphism	ref_cov=21/23	total_cov=47/47
RA	313	.	NC_000913	1429114	0	C	T	bias_e_value=4039950	bias_p_value=0.870369	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.5	fisher_strand_p_value=0.536173	frequency=5.161e-01	ks_quality_p_value=1	major_base=T	major_cov=26/22	major_frequency=5.161e-01	minor_base=C	minor_cov=21/24	new_cov=26/22	polymorphism_frequency=5.161e-01	polymorphism_score=129.8	prediction=polymorphism	ref_cov=21/24	total_cov=47/47
RA	314	.	NC_000913	1429126	0	A	C	bias_e_value=4628850	bias_p_value=0.997242	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.2	fisher_strand_p_value=1	frequency=5.049e-01	ks_quality_p_value=0.926653	major_base=C	major_cov=28/24	major_frequency=5.049e-01	minor_base=A	minor_cov=27/24	new_cov=28/24	polymorphism_frequency=5.049e-01	polymorphism_score=152.3	prediction=polymorphism	ref_cov=27/24	total_cov=55/48
RA	315	.	NC_000913	1429128	0	A	G	bias_e_value=4633460	bias_p_value=0.998235	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.6	fisher_strand_p_value=1	frequency=5.049e-01	ks_quality_p_value=0.94117	major_base=G	major_cov=28/24	major_frequency=5.049e-01	minor_base=A	minor_cov=27/24	new_cov=28/24	polymorphism_frequency=5.049e-01	polymorphism_score=144.9	prediction=polymorphism	ref_cov=27/24	total_cov=55/48
RA	316	.	NC_000913	1429160	0	C	G	bias_e_value=4417890	bias_p_value=0.951793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.6	fisher_strand_p_value=0.847387	frequency=5.273e-01	ks_quality_p_value=0.83317	major_base=G	major_cov=33/25	major_frequency=5.273e-01	minor_base=C	minor_cov=31/21	new_cov=33/25	polymorphism_frequency=5.273e-01	polymorphism_score=172.3	prediction=polymorphism	ref_cov=31/21	total_cov=64/46
RA	317	.	NC_000913	1429164	0	C	G	bias_e_value=4394090	bias_p_value=0.946666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.0	fisher_strand_p_value=0.691709	frequency=5.429e-01	ks_quality_p_value=1	major_base=G	major_cov=33/24	major_frequency=5.429e-01	minor_base=C	minor_cov=30/18	new_cov=33/24	polymorphism_frequency=5.429e-01	polymorphism_score=166.1	prediction=polymorphism	ref_cov=30/18	total_cov=63/43
RA	318	.	NC_000913	1429171	0	A	G	bias_e_value=4055580	bias_p_value=0.873736	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.2	fisher_strand_p_value=0.549722	frequency=5.619e-01	ks_quality_p_value=0.985259	major_base=G	major_cov=33/26	major_frequency=5.619e-01	minor_base=A	minor_cov=29/17	new_cov=33/26	polymorphism_frequency=5.619e-01	polymorphism_score=125.9	prediction=polymorphism	ref_cov=29/17	total_cov=63/43
RA	319	.	NC_000913	1429204	0	C	T	bias_e_value=2628080	bias_p_value=0.566195	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.6	fisher_strand_p_value=0.305632	frequency=5.429e-01	ks_quality_p_value=0.74847	major_base=T	major_cov=34/23	major_frequency=5.429e-01	minor_base=C	minor_cov=34/14	new_cov=34/23	polymorphism_frequency=5.429e-01	polymorphism_score=116.7	prediction=polymorphism	ref_cov=34/14	total_cov=68/37
RA	320	.	NC_000913	1429207	0	T	G	bias_e_value=1496090	bias_p_value=0.322319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.6	fisher_strand_p_value=0.0965779	frequency=5.769e-01	ks_quality_p_value=1	major_base=G	major_cov=35/25	major_frequency=5.769e-01	minor_base=T	minor_cov=33/11	new_cov=35/25	polymorphism_frequency=5.769e-01	polymorphism_score=119.7	prediction=polymorphism	ref_cov=33/11	total_cov=68/36
RA	321	.	NC_000913	1429225	0	C	T	bias_e_value=377382	bias_p_value=0.0813033	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.2	fisher_strand_p_value=0.8223	frequency=4.889e-01	ks_quality_p_value=0.0192053	major_base=C	major_cov=32/14	major_frequency=5.111e-01	minor_base=T	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.889e-01	polymorphism_score=128.4	prediction=polymorphism	ref_cov=32/14	total_cov=62/29
RA	322	.	NC_000913	1429228	0	T	C	bias_e_value=84007.9	bias_p_value=0.0180987	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.4	fisher_strand_p_value=0.8223	frequency=4.889e-01	ks_quality_p_value=0.00316654	major_base=T	major_cov=32/14	major_frequency=5.111e-01	minor_base=C	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.889e-01	polymorphism_score=133.0	prediction=polymorphism	ref_cov=32/14	total_cov=62/29
RA	323	.	NC_000913	1429231	0	T	C	bias_e_value=1782270	bias_p_value=0.383973	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.3	fisher_strand_p_value=0.650345	frequency=4.889e-01	ks_quality_p_value=0.191498	major_base=T	major_cov=33/13	major_frequency=5.111e-01	minor_base=C	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.889e-01	polymorphism_score=136.0	prediction=polymorphism	ref_cov=33/13	total_cov=62/29
RA	324	.	NC_000913	1429235	0	T	C	bias_e_value=203972	bias_p_value=0.0439439	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.6	fisher_strand_p_value=0.648273	frequency=4.831e-01	ks_quality_p_value=0.0114896	major_base=T	major_cov=33/13	major_frequency=5.169e-01	minor_base=C	minor_cov=28/15	new_cov=28/15	polymorphism_frequency=4.831e-01	polymorphism_score=138.5	prediction=polymorphism	ref_cov=33/13	total_cov=63/29
RA	325	.	NC_000913	1429236	0	T	A	bias_e_value=283012	bias_p_value=0.0609723	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.9	fisher_strand_p_value=0.364198	frequency=4.889e-01	ks_quality_p_value=0.030425	major_base=T	major_cov=34/12	major_frequency=5.111e-01	minor_base=A	minor_cov=28/16	new_cov=28/16	polymorphism_frequency=4.889e-01	polymorphism_score=149.7	prediction=polymorphism	ref_cov=34/12	total_cov=63/29
RA	326	.	NC_000913	1429240	0	G	T	bias_e_value=641148	bias_p_value=0.138129	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.5	fisher_strand_p_value=0.653369	frequency=4.674e-01	ks_quality_p_value=0.0472009	major_base=G	major_cov=35/14	major_frequency=5.326e-01	minor_base=T	minor_cov=28/15	new_cov=28/15	polymorphism_frequency=4.674e-01	polymorphism_score=122.3	prediction=polymorphism	ref_cov=35/14	total_cov=63/29
RA	327	.	NC_000913	1429243	0	A	C	bias_e_value=1109790	bias_p_value=0.239095	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.5	fisher_strand_p_value=0.65798	frequency=4.526e-01	ks_quality_p_value=0.0968072	major_base=A	major_cov=37/15	major_frequency=5.474e-01	minor_base=C	minor_cov=28/15	new_cov=28/15	polymorphism_frequency=4.526e-01	polymorphism_score=136.1	prediction=polymorphism	ref_cov=37/15	total_cov=65/31
RA	328	.	NC_000913	1429246	0	A	T	bias_e_value=3996250	bias_p_value=0.860955	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.9	fisher_strand_p_value=0.662518	frequency=4.737e-01	ks_quality_p_value=0.786996	major_base=A	major_cov=35/15	major_frequency=5.263e-01	minor_base=T	minor_cov=29/16	new_cov=29/16	polymorphism_frequency=4.737e-01	polymorphism_score=138.7	prediction=polymorphism	ref_cov=35/15	total_cov=65/31
RA	329	.	NC_000913	1429249	0	C	T	bias_e_value=781748	bias_p_value=0.16842	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.3	fisher_strand_p_value=1	frequency=4.388e-01	ks_quality_p_value=0.039896	major_base=C	major_cov=38/17	major_frequency=5.612e-01	minor_base=T	minor_cov=29/14	new_cov=29/14	polymorphism_frequency=4.388e-01	polymorphism_score=126.4	prediction=polymorphism	ref_cov=38/17	total_cov=67/32
RA	330	.	NC_000913	1429252	0	G	A	bias_e_value=10540.2	bias_p_value=0.00227078	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.4	fisher_strand_p_value=1	frequency=4.479e-01	ks_quality_p_value=0.000243653	major_base=G	major_cov=36/17	major_frequency=5.521e-01	minor_base=A	minor_cov=29/14	new_cov=29/14	polymorphism_frequency=4.479e-01	polymorphism_score=120.4	prediction=polymorphism	ref_cov=36/17	total_cov=65/32
RA	331	.	NC_000913	1429255	0	G	A	bias_e_value=207175	bias_p_value=0.044634	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.1	fisher_strand_p_value=1	frequency=4.536e-01	ks_quality_p_value=0.00758955	major_base=G	major_cov=36/17	major_frequency=5.464e-01	minor_base=A	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.536e-01	polymorphism_score=120.3	prediction=polymorphism	ref_cov=36/17	total_cov=65/32
RA	332	.	NC_000913	1429258	0	A	G	bias_e_value=4447130	bias_p_value=0.958092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.0	fisher_strand_p_value=1	frequency=4.583e-01	ks_quality_p_value=0.724826	major_base=A	major_cov=35/17	major_frequency=5.417e-01	minor_base=G	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.583e-01	polymorphism_score=128.0	prediction=polymorphism	ref_cov=35/17	total_cov=64/32
RA	333	.	NC_000913	1429261	0	T	C	bias_e_value=2373450	bias_p_value=0.511338	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.9	fisher_strand_p_value=1	frequency=4.536e-01	ks_quality_p_value=0.193511	major_base=T	major_cov=36/17	major_frequency=5.464e-01	minor_base=C	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.536e-01	polymorphism_score=131.1	prediction=polymorphism	ref_cov=36/17	total_cov=65/32
RA	334	.	NC_000913	1429273	0	T	C	bias_e_value=4144230	bias_p_value=0.892834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=0.660659	frequency=4.583e-01	ks_quality_p_value=0.869353	major_base=T	major_cov=37/15	major_frequency=5.417e-01	minor_base=C	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.583e-01	polymorphism_score=130.7	prediction=polymorphism	ref_cov=37/15	total_cov=66/31
RA	335	.	NC_000913	1429291	0	T	A	bias_e_value=3126240	bias_p_value=0.673519	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.3	fisher_strand_p_value=0.510344	frequency=4.271e-01	ks_quality_p_value=0.608192	major_base=T	major_cov=39/16	major_frequency=5.729e-01	minor_base=A	minor_cov=26/15	new_cov=26/15	polymorphism_frequency=4.271e-01	polymorphism_score=139.7	prediction=polymorphism	ref_cov=39/16	total_cov=65/31
RA	336	.	NC_000913	1429297	0	C	G	bias_e_value=3151330	bias_p_value=0.678924	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.7	fisher_strand_p_value=0.663218	frequency=4.194e-01	ks_quality_p_value=0.475011	major_base=C	major_cov=37/17	major_frequency=5.806e-01	minor_base=G	minor_cov=25/14	new_cov=25/14	polymorphism_frequency=4.194e-01	polymorphism_score=142.8	prediction=polymorphism	ref_cov=37/17	total_cov=64/31
RA	337	.	NC_000913	1429300	0	T	G	bias_e_value=3096090	bias_p_value=0.667024	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.5	fisher_strand_p_value=0.502699	frequency=4.062e-01	ks_quality_p_value=0.60648	major_base=T	major_cov=41/16	major_frequency=5.938e-01	minor_base=G	minor_cov=25/14	new_cov=25/14	polymorphism_frequency=4.062e-01	polymorphism_score=106.5	prediction=polymorphism	ref_cov=41/16	total_cov=66/30
RA	338	.	NC_000913	1429319	0	G	T	bias_e_value=125634	bias_p_value=0.0270666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.4	fisher_strand_p_value=0.679215	frequency=4.231e-01	ks_quality_p_value=0.00615171	major_base=G	major_cov=40/20	major_frequency=5.769e-01	minor_base=T	minor_cov=27/17	new_cov=27/17	polymorphism_frequency=4.231e-01	polymorphism_score=134.5	prediction=polymorphism	ref_cov=40/20	total_cov=67/37
RA	339	.	NC_000913	1429345	0	T	G	bias_e_value=1527880	bias_p_value=0.329168	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.6	fisher_strand_p_value=0.112564	frequency=4.128e-01	ks_quality_p_value=0.88418	major_base=T	major_cov=43/21	major_frequency=5.872e-01	minor_base=G	minor_cov=23/22	new_cov=23/22	polymorphism_frequency=4.128e-01	polymorphism_score=114.3	prediction=polymorphism	ref_cov=43/21	total_cov=66/43
RA	340	.	NC_000913	1429353	0	C	T	bias_e_value=2972410	bias_p_value=0.640377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.7	fisher_strand_p_value=0.307942	frequency=3.619e-01	ks_quality_p_value=0.919375	major_base=C	major_cov=41/26	major_frequency=6.381e-01	minor_base=T	minor_cov=19/19	new_cov=19/19	polymorphism_frequency=3.619e-01	polymorphism_score=93.3	prediction=polymorphism	ref_cov=41/26	total_cov=60/45
RA	341	.	NC_000913	1429354	0	A	G	bias_e_value=2961140	bias_p_value=0.637949	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.3	fisher_strand_p_value=0.306193	frequency=3.585e-01	ks_quality_p_value=0.918358	major_base=A	major_cov=42/26	major_frequency=6.415e-01	minor_base=G	minor_cov=19/19	new_cov=19/19	polymorphism_frequency=3.585e-01	polymorphism_score=102.5	prediction=polymorphism	ref_cov=42/26	total_cov=61/45
RA	342	.	NC_000913	1429360	0	C	T	bias_e_value=2951710	bias_p_value=0.635917	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=0.310705	frequency=3.810e-01	ks_quality_p_value=0.899879	major_base=C	major_cov=40/25	major_frequency=6.190e-01	minor_base=T	minor_cov=20/20	new_cov=20/20	polymorphism_frequency=3.810e-01	polymorphism_score=110.7	prediction=polymorphism	ref_cov=40/25	total_cov=62/45
RA	343	.	NC_000913	1429364	0	T	C	bias_e_value=1135730	bias_p_value=0.244682	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.6	fisher_strand_p_value=0.421017	frequency=3.738e-01	ks_quality_p_value=0.156141	major_base=T	major_cov=40/27	major_frequency=6.262e-01	minor_base=C	minor_cov=20/20	new_cov=20/20	polymorphism_frequency=3.738e-01	polymorphism_score=122.0	prediction=polymorphism	ref_cov=40/27	total_cov=60/47
RA	344	.	NC_000913	1429404	0	C	T	bias_e_value=48731.7	bias_p_value=0.0104988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.7	fisher_strand_p_value=0.31172	frequency=3.750e-01	ks_quality_p_value=0.00444193	major_base=C	major_cov=36/29	major_frequency=6.250e-01	minor_base=T	minor_cov=17/22	new_cov=17/22	polymorphism_frequency=3.750e-01	polymorphism_score=108.8	prediction=polymorphism	ref_cov=36/29	total_cov=53/51
RA	345	.	NC_000913	1429416	0	A	G	bias_e_value=3137110	bias_p_value=0.67586	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.5	fisher_strand_p_value=0.402802	frequency=3.366e-01	ks_quality_p_value=0.77555	major_base=A	major_cov=38/29	major_frequency=6.634e-01	minor_base=G	minor_cov=16/18	new_cov=16/18	polymorphism_frequency=3.366e-01	polymorphism_score=100.3	prediction=polymorphism	ref_cov=38/29	total_cov=54/47
RA	346	.	NC_000913	1429417	0	C	T	bias_e_value=3416470	bias_p_value=0.736046	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.0	fisher_strand_p_value=0.396634	frequency=3.235e-01	ks_quality_p_value=0.928227	major_base=C	major_cov=39/30	major_frequency=6.765e-01	minor_base=T	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=3.235e-01	polymorphism_score=80.5	prediction=polymorphism	ref_cov=39/30	total_cov=54/48
RA	347	.	NC_000913	1429425	0	C	A	bias_e_value=2979530	bias_p_value=0.641911	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.7	fisher_strand_p_value=0.532504	frequency=3.333e-01	ks_quality_p_value=0.533951	major_base=C	major_cov=37/31	major_frequency=6.667e-01	minor_base=A	minor_cov=16/18	new_cov=16/18	polymorphism_frequency=3.333e-01	polymorphism_score=97.3	prediction=polymorphism	ref_cov=37/31	total_cov=54/49
RA	348	.	NC_000913	1429435	0	G	A	bias_e_value=2426410	bias_p_value=0.522747	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.9	fisher_strand_p_value=0.39003	frequency=3.069e-01	ks_quality_p_value=0.514152	major_base=G	major_cov=39/31	major_frequency=6.931e-01	minor_base=A	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.069e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=39/31	total_cov=53/48
RA	349	.	NC_000913	1429442	0	A	G	bias_e_value=3973040	bias_p_value=0.855955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.0	fisher_strand_p_value=0.513806	frequency=3.196e-01	ks_quality_p_value=1	major_base=A	major_cov=36/30	major_frequency=6.804e-01	minor_base=G	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.196e-01	polymorphism_score=80.0	prediction=polymorphism	ref_cov=36/30	total_cov=50/48
RA	350	.	NC_000913	1429444	0	T	C	bias_e_value=3978170	bias_p_value=0.857059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.4	fisher_strand_p_value=0.5226	frequency=3.367e-01	ks_quality_p_value=0.986355	major_base=T	major_cov=35/30	major_frequency=6.633e-01	minor_base=C	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=3.367e-01	polymorphism_score=85.1	prediction=polymorphism	ref_cov=35/30	total_cov=50/49
RA	351	.	NC_000913	1429453	0	C	T	bias_e_value=1015860	bias_p_value=0.218858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.8	fisher_strand_p_value=0.514992	frequency=3.061e-01	ks_quality_p_value=0.109713	major_base=C	major_cov=35/33	major_frequency=6.939e-01	minor_base=T	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.061e-01	polymorphism_score=81.2	prediction=polymorphism	ref_cov=35/33	total_cov=49/50
RA	352	.	NC_000913	1429454	0	A	G	bias_e_value=3788860	bias_p_value=0.816274	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.4	fisher_strand_p_value=0.511235	frequency=3.061e-01	ks_quality_p_value=0.897445	major_base=A	major_cov=36/32	major_frequency=6.939e-01	minor_base=G	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.061e-01	polymorphism_score=87.0	prediction=polymorphism	ref_cov=36/32	total_cov=49/50
RA	353	.	NC_000913	1429462	0	C	T	bias_e_value=1022920	bias_p_value=0.220379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.7	fisher_strand_p_value=0.511235	frequency=2.990e-01	ks_quality_p_value=0.111557	major_base=C	major_cov=36/32	major_frequency=7.010e-01	minor_base=T	minor_cov=13/16	new_cov=13/16	polymorphism_frequency=2.990e-01	polymorphism_score=74.1	prediction=polymorphism	ref_cov=36/32	total_cov=50/49
RA	354	.	NC_000913	1429463	0	C	G	bias_e_value=1179660	bias_p_value=0.254146	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.1	fisher_strand_p_value=0.387325	frequency=3.030e-01	ks_quality_p_value=0.178786	major_base=C	major_cov=37/32	major_frequency=6.970e-01	minor_base=G	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.030e-01	polymorphism_score=107.4	prediction=polymorphism	ref_cov=37/32	total_cov=50/49
RA	355	.	NC_000913	1429464	0	G	C	bias_e_value=1743180	bias_p_value=0.375552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.7	fisher_strand_p_value=0.513094	frequency=3.000e-01	ks_quality_p_value=0.234906	major_base=G	major_cov=37/33	major_frequency=7.000e-01	minor_base=C	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.000e-01	polymorphism_score=103.7	prediction=polymorphism	ref_cov=37/33	total_cov=50/50
RA	356	.	NC_000913	1429466	0	G	C	bias_e_value=20311.8	bias_p_value=0.00437599	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.9	fisher_strand_p_value=0.389412	frequency=2.970e-01	ks_quality_p_value=0.00130954	major_base=G	major_cov=38/33	major_frequency=7.030e-01	minor_base=C	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.970e-01	polymorphism_score=104.7	prediction=polymorphism	ref_cov=38/33	total_cov=51/50
RA	357	.	NC_000913	1429470	0	C	T	bias_e_value=2777440	bias_p_value=0.598374	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.0	fisher_strand_p_value=0.381776	frequency=3.030e-01	ks_quality_p_value=0.658243	major_base=C	major_cov=38/31	major_frequency=6.970e-01	minor_base=T	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.030e-01	polymorphism_score=79.7	prediction=polymorphism	ref_cov=38/31	total_cov=52/48
RA	358	.	NC_000913	1429471	0	G	C	bias_e_value=1804540	bias_p_value=0.388771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.7	fisher_strand_p_value=0.381776	frequency=3.030e-01	ks_quality_p_value=0.332272	major_base=G	major_cov=38/31	major_frequency=6.970e-01	minor_base=C	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.030e-01	polymorphism_score=102.5	prediction=polymorphism	ref_cov=38/31	total_cov=52/48
RA	359	.	NC_000913	1429474	0	A	G	bias_e_value=342120	bias_p_value=0.0737066	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.7	fisher_strand_p_value=0.284263	frequency=2.941e-01	ks_quality_p_value=0.0492048	major_base=A	major_cov=40/32	major_frequency=7.059e-01	minor_base=G	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.941e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=40/32	total_cov=53/49
RA	360	.	NC_000913	1429475	0	A	G	bias_e_value=1015730	bias_p_value=0.21883	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.9	fisher_strand_p_value=0.383866	frequency=2.970e-01	ks_quality_p_value=0.147165	major_base=A	major_cov=39/32	major_frequency=7.030e-01	minor_base=G	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.970e-01	polymorphism_score=82.0	prediction=polymorphism	ref_cov=39/32	total_cov=53/49
RA	361	.	NC_000913	1429479	0	A	T	bias_e_value=103241	bias_p_value=0.0222424	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.7	fisher_strand_p_value=0.387772	frequency=2.857e-01	ks_quality_p_value=0.00854931	major_base=A	major_cov=41/34	major_frequency=7.143e-01	minor_base=T	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.857e-01	polymorphism_score=95.4	prediction=polymorphism	ref_cov=41/34	total_cov=54/51
RA	362	.	NC_000913	1429482	0	C	T	bias_e_value=1710800	bias_p_value=0.368575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.7	fisher_strand_p_value=0.28261	frequency=3.010e-01	ks_quality_p_value=0.414892	major_base=C	major_cov=40/32	major_frequency=6.990e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=3.010e-01	polymorphism_score=81.5	prediction=polymorphism	ref_cov=40/32	total_cov=54/50
RA	363	.	NC_000913	1429484	0	G	A	bias_e_value=436653	bias_p_value=0.0940728	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.7	fisher_strand_p_value=0.286558	frequency=2.885e-01	ks_quality_p_value=0.0661016	major_base=G	major_cov=41/33	major_frequency=7.115e-01	minor_base=A	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.885e-01	polymorphism_score=78.6	prediction=polymorphism	ref_cov=41/33	total_cov=54/50
RA	364	.	NC_000913	1429492	0	T	A	bias_e_value=132496	bias_p_value=0.0285451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.1	fisher_strand_p_value=0.281866	frequency=3.000e-01	ks_quality_p_value=0.015787	major_base=T	major_cov=39/31	major_frequency=7.000e-01	minor_base=A	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.000e-01	polymorphism_score=93.2	prediction=polymorphism	ref_cov=39/31	total_cov=52/48
RA	365	.	NC_000913	1429493	0	G	A	bias_e_value=1999980	bias_p_value=0.430877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.2	fisher_strand_p_value=0.281866	frequency=3.000e-01	ks_quality_p_value=0.525288	major_base=G	major_cov=39/31	major_frequency=7.000e-01	minor_base=A	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.000e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=39/31	total_cov=52/48
RA	366	.	NC_000913	1429495	0	G	T	bias_e_value=926626	bias_p_value=0.199633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.2	fisher_strand_p_value=0.389412	frequency=2.970e-01	ks_quality_p_value=0.128267	major_base=G	major_cov=38/33	major_frequency=7.030e-01	minor_base=T	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.970e-01	polymorphism_score=87.2	prediction=polymorphism	ref_cov=38/33	total_cov=51/50
RA	367	.	NC_000913	1429510	0	A	C	bias_e_value=2013980	bias_p_value=0.433893	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.0	fisher_strand_p_value=0.558454	frequency=3.694e-01	ks_quality_p_value=0.267962	major_base=A	major_cov=37/33	major_frequency=6.306e-01	minor_base=C	minor_cov=19/22	new_cov=19/22	polymorphism_frequency=3.694e-01	polymorphism_score=114.2	prediction=polymorphism	ref_cov=37/33	total_cov=56/55
RA	368	.	NC_000913	1429522	0	A	C	bias_e_value=4026750	bias_p_value=0.867524	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.0	fisher_strand_p_value=1	frequency=3.684e-01	ks_quality_p_value=0.53164	major_base=A	major_cov=37/35	major_frequency=6.316e-01	minor_base=C	minor_cov=21/21	new_cov=21/21	polymorphism_frequency=3.684e-01	polymorphism_score=115.6	prediction=polymorphism	ref_cov=37/35	total_cov=58/56
RA	369	.	NC_000913	1429534	0	C	T	bias_e_value=2565610	bias_p_value=0.552736	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.6	fisher_strand_p_value=1	frequency=3.661e-01	ks_quality_p_value=0.219755	major_base=C	major_cov=36/35	major_frequency=6.339e-01	minor_base=T	minor_cov=20/21	new_cov=20/21	polymorphism_frequency=3.661e-01	polymorphism_score=110.8	prediction=polymorphism	ref_cov=36/35	total_cov=57/56
RA	370	.	NC_000913	1429537	0	G	A	bias_e_value=2406460	bias_p_value=0.51845	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.4	fisher_strand_p_value=1	frequency=3.694e-01	ks_quality_p_value=0.197871	major_base=G	major_cov=36/34	major_frequency=6.306e-01	minor_base=A	minor_cov=21/20	new_cov=21/20	polymorphism_frequency=3.694e-01	polymorphism_score=112.8	prediction=polymorphism	ref_cov=36/34	total_cov=57/54
RA	371	.	NC_000913	1429543	0	G	A	bias_e_value=272989	bias_p_value=0.0588129	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.6	fisher_strand_p_value=1	frequency=3.694e-01	ks_quality_p_value=0.0106035	major_base=G	major_cov=37/33	major_frequency=6.306e-01	minor_base=A	minor_cov=21/20	new_cov=21/20	polymorphism_frequency=3.694e-01	polymorphism_score=115.7	prediction=polymorphism	ref_cov=37/33	total_cov=58/54
RA	372	.	NC_000913	1429550	0	T	G	bias_e_value=4085310	bias_p_value=0.880141	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.4	fisher_strand_p_value=0.697949	frequency=3.981e-01	ks_quality_p_value=0.791224	major_base=T	major_cov=32/33	major_frequency=6.019e-01	minor_base=G	minor_cov=23/20	new_cov=23/20	polymorphism_frequency=3.981e-01	polymorphism_score=125.5	prediction=polymorphism	ref_cov=32/33	total_cov=57/54
RA	373	.	NC_000913	1429551	0	C	A	bias_e_value=1313900	bias_p_value=0.283068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.7	fisher_strand_p_value=0.844229	frequency=3.694e-01	ks_quality_p_value=0.095235	major_base=C	major_cov=35/35	major_frequency=6.306e-01	minor_base=A	minor_cov=22/19	new_cov=22/19	polymorphism_frequency=3.694e-01	polymorphism_score=118.7	prediction=polymorphism	ref_cov=35/35	total_cov=57/54
RA	374	.	NC_000913	1429558	0	T	C	bias_e_value=4264350	bias_p_value=0.918713	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.0	fisher_strand_p_value=0.837517	frequency=3.241e-01	ks_quality_p_value=0.746153	major_base=T	major_cov=37/36	major_frequency=6.759e-01	minor_base=C	minor_cov=19/16	new_cov=19/16	polymorphism_frequency=3.241e-01	polymorphism_score=91.8	prediction=polymorphism	ref_cov=37/36	total_cov=56/53
RA	375	.	NC_000913	1429562	0	A	G	bias_e_value=2663370	bias_p_value=0.573797	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.6	fisher_strand_p_value=0.68664	frequency=3.271e-01	ks_quality_p_value=0.340717	major_base=A	major_cov=36/36	major_frequency=6.729e-01	minor_base=G	minor_cov=19/16	new_cov=19/16	polymorphism_frequency=3.271e-01	polymorphism_score=101.4	prediction=polymorphism	ref_cov=36/36	total_cov=55/53
RA	376	.	NC_000913	1429569	0	G	A	bias_e_value=4053890	bias_p_value=0.873372	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.2	fisher_strand_p_value=0.68266	frequency=3.302e-01	ks_quality_p_value=0.792528	major_base=G	major_cov=35/36	major_frequency=6.698e-01	minor_base=A	minor_cov=19/16	new_cov=19/16	polymorphism_frequency=3.302e-01	polymorphism_score=88.8	prediction=polymorphism	ref_cov=35/36	total_cov=54/52
RA	377	.	NC_000913	1429571	0	A	G	bias_e_value=3638830	bias_p_value=0.783951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.8	fisher_strand_p_value=0.835384	frequency=3.431e-01	ks_quality_p_value=0.502212	major_base=A	major_cov=34/33	major_frequency=6.569e-01	minor_base=G	minor_cov=19/16	new_cov=19/16	polymorphism_frequency=3.431e-01	polymorphism_score=93.4	prediction=polymorphism	ref_cov=34/33	total_cov=54/51
RA	378	.	NC_000913	1429580	0	A	G	bias_e_value=4358620	bias_p_value=0.939022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.3	fisher_strand_p_value=0.685682	frequency=3.750e-01	ks_quality_p_value=0.979696	major_base=A	major_cov=31/34	major_frequency=6.250e-01	minor_base=G	minor_cov=21/18	new_cov=21/18	polymorphism_frequency=3.750e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=31/34	total_cov=52/53
RA	379	.	NC_000913	1429597	0	A	G	bias_e_value=4252550	bias_p_value=0.916172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.8	fisher_strand_p_value=0.830503	frequency=3.438e-01	ks_quality_p_value=0.746008	major_base=A	major_cov=31/32	major_frequency=6.562e-01	minor_base=G	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=3.438e-01	polymorphism_score=93.0	prediction=polymorphism	ref_cov=31/32	total_cov=46/51
RA	380	.	NC_000913	1429598	0	T	G	bias_e_value=4091810	bias_p_value=0.881543	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.9	fisher_strand_p_value=0.671496	frequency=3.646e-01	ks_quality_p_value=0.82592	major_base=T	major_cov=30/31	major_frequency=6.354e-01	minor_base=G	minor_cov=15/20	new_cov=15/20	polymorphism_frequency=3.646e-01	polymorphism_score=84.0	prediction=polymorphism	ref_cov=30/31	total_cov=45/51
RA	381	.	NC_000913	1429599	0	C	A	bias_e_value=4641080	bias_p_value=0.999876	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.5	fisher_strand_p_value=1	frequency=3.542e-01	ks_quality_p_value=0.984312	major_base=C	major_cov=29/33	major_frequency=6.458e-01	minor_base=A	minor_cov=16/18	new_cov=16/18	polymorphism_frequency=3.542e-01	polymorphism_score=88.7	prediction=polymorphism	ref_cov=29/33	total_cov=45/51
RA	382	.	NC_000913	1429609	0	T	C	bias_e_value=2909730	bias_p_value=0.626874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.0	fisher_strand_p_value=0.664483	frequency=3.298e-01	ks_quality_p_value=0.4102	major_base=T	major_cov=32/31	major_frequency=6.702e-01	minor_base=C	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.298e-01	polymorphism_score=78.1	prediction=polymorphism	ref_cov=32/31	total_cov=46/49
RA	383	.	NC_000913	1429612	0	C	A	bias_e_value=4561700	bias_p_value=0.982776	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.6	fisher_strand_p_value=0.82882	frequency=3.333e-01	ks_quality_p_value=0.989637	major_base=C	major_cov=33/31	major_frequency=6.667e-01	minor_base=A	minor_cov=15/17	new_cov=15/17	polymorphism_frequency=3.333e-01	polymorphism_score=74.7	prediction=polymorphism	ref_cov=33/31	total_cov=48/49
RA	384	.	NC_000913	1429615	0	T	C	bias_e_value=4320670	bias_p_value=0.930847	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.0	fisher_strand_p_value=0.662827	frequency=3.229e-01	ks_quality_p_value=0.983593	major_base=T	major_cov=34/31	major_frequency=6.771e-01	minor_base=C	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.229e-01	polymorphism_score=64.0	prediction=polymorphism	ref_cov=34/31	total_cov=48/49
RA	385	.	NC_000913	1429632	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.3	fisher_strand_p_value=1	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=33/32	major_frequency=6.250e-01	minor_base=A	minor_cov=20/19	new_cov=20/19	polymorphism_frequency=3.750e-01	polymorphism_score=98.6	prediction=polymorphism	ref_cov=33/32	total_cov=53/51
RA	386	.	NC_000913	1429682	0	T	G	bias_e_value=494028	bias_p_value=0.106434	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.8	fisher_strand_p_value=0.595634	frequency=5.078e-01	ks_quality_p_value=0.0371406	major_base=G	major_cov=29/36	major_frequency=5.078e-01	minor_base=T	minor_cov=32/31	new_cov=29/36	polymorphism_frequency=5.078e-01	polymorphism_score=181.5	prediction=polymorphism	ref_cov=32/31	total_cov=62/67
RA	387	.	NC_000913	1429692	0	T	A	bias_e_value=4104230	bias_p_value=0.884218	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.4	fisher_strand_p_value=0.864559	frequency=4.818e-01	ks_quality_p_value=0.646771	major_base=T	major_cov=35/36	major_frequency=5.182e-01	minor_base=A	minor_cov=31/35	new_cov=31/35	polymorphism_frequency=4.818e-01	polymorphism_score=208.8	prediction=polymorphism	ref_cov=35/36	total_cov=66/72
RA	388	.	NC_000913	1429702	0	A	C	bias_e_value=4523990	bias_p_value=0.974651	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.0	fisher_strand_p_value=0.867561	frequency=4.929e-01	ks_quality_p_value=0.903056	major_base=A	major_cov=35/36	major_frequency=5.071e-01	minor_base=C	minor_cov=33/36	new_cov=33/36	polymorphism_frequency=4.929e-01	polymorphism_score=189.9	prediction=polymorphism	ref_cov=35/36	total_cov=68/72
RA	389	.	NC_000913	1429708	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.4	fisher_strand_p_value=1	frequency=4.752e-01	ks_quality_p_value=1	major_base=A	major_cov=35/39	major_frequency=5.248e-01	minor_base=G	minor_cov=32/35	new_cov=32/35	polymorphism_frequency=4.752e-01	polymorphism_score=191.6	prediction=polymorphism	ref_cov=35/39	total_cov=67/77
RA	390	.	NC_000913	1429714	0	A	C	bias_e_value=4630890	bias_p_value=0.997681	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.0	fisher_strand_p_value=1	frequency=4.865e-01	ks_quality_p_value=0.932672	major_base=A	major_cov=35/41	major_frequency=5.135e-01	minor_base=C	minor_cov=34/38	new_cov=34/38	polymorphism_frequency=4.865e-01	polymorphism_score=198.2	prediction=polymorphism	ref_cov=35/41	total_cov=69/80
RA	391	.	NC_000913	1429724	0	A	G	bias_e_value=4599750	bias_p_value=0.990972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.1	fisher_strand_p_value=0.868672	frequency=4.759e-01	ks_quality_p_value=1	major_base=A	major_cov=34/42	major_frequency=5.241e-01	minor_base=G	minor_cov=32/37	new_cov=32/37	polymorphism_frequency=4.759e-01	polymorphism_score=173.3	prediction=polymorphism	ref_cov=34/42	total_cov=66/79
RA	392	.	NC_000913	1429732	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.1	fisher_strand_p_value=1	frequency=4.789e-01	ks_quality_p_value=1	major_base=G	major_cov=33/41	major_frequency=5.211e-01	minor_base=A	minor_cov=30/38	new_cov=30/38	polymorphism_frequency=4.789e-01	polymorphism_score=185.7	prediction=polymorphism	ref_cov=33/41	total_cov=63/79
RA	393	.	NC_000913	1429735	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.0	fisher_strand_p_value=1	frequency=4.681e-01	ks_quality_p_value=1	major_base=A	major_cov=33/42	major_frequency=5.319e-01	minor_base=G	minor_cov=29/37	new_cov=29/37	polymorphism_frequency=4.681e-01	polymorphism_score=184.8	prediction=polymorphism	ref_cov=33/42	total_cov=62/79
RA	394	.	NC_000913	1429741	0	A	G	bias_e_value=3996850	bias_p_value=0.861083	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.3	fisher_strand_p_value=1	frequency=4.586e-01	ks_quality_p_value=0.521596	major_base=A	major_cov=32/40	major_frequency=5.414e-01	minor_base=G	minor_cov=27/34	new_cov=27/34	polymorphism_frequency=4.586e-01	polymorphism_score=182.8	prediction=polymorphism	ref_cov=32/40	total_cov=59/74
RA	395	.	NC_000913	1429744	0	T	C	bias_e_value=2644700	bias_p_value=0.569775	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.6	fisher_strand_p_value=1	frequency=4.656e-01	ks_quality_p_value=0.231192	major_base=T	major_cov=32/38	major_frequency=5.344e-01	minor_base=C	minor_cov=27/34	new_cov=27/34	polymorphism_frequency=4.656e-01	polymorphism_score=175.6	prediction=polymorphism	ref_cov=32/38	total_cov=59/73
RA	396	.	NC_000913	1429747	0	G	C	bias_e_value=2298460	bias_p_value=0.495182	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.3	fisher_strand_p_value=1	frequency=4.615e-01	ks_quality_p_value=0.183825	major_base=G	major_cov=31/39	major_frequency=5.385e-01	minor_base=C	minor_cov=27/33	new_cov=27/33	polymorphism_frequency=4.615e-01	polymorphism_score=218.3	prediction=polymorphism	ref_cov=31/39	total_cov=58/73
RA	397	.	NC_000913	1429750	0	C	T	bias_e_value=46334.4	bias_p_value=0.00998231	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.1	fisher_strand_p_value=1	frequency=4.574e-01	ks_quality_p_value=0.00130652	major_base=C	major_cov=31/39	major_frequency=5.426e-01	minor_base=T	minor_cov=27/32	new_cov=27/32	polymorphism_frequency=4.574e-01	polymorphism_score=162.4	prediction=polymorphism	ref_cov=31/39	total_cov=58/73
RA	398	.	NC_000913	1429753	0	G	A	bias_e_value=99831	bias_p_value=0.0215077	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.8	fisher_strand_p_value=1	frequency=4.656e-01	ks_quality_p_value=0.00318693	major_base=G	major_cov=31/39	major_frequency=5.344e-01	minor_base=A	minor_cov=27/34	new_cov=27/34	polymorphism_frequency=4.656e-01	polymorphism_score=183.0	prediction=polymorphism	ref_cov=31/39	total_cov=58/73
RA	399	.	NC_000913	1429756	0	C	A	bias_e_value=993519	bias_p_value=0.214044	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.4	fisher_strand_p_value=1	frequency=4.806e-01	ks_quality_p_value=0.054835	major_base=C	major_cov=30/37	major_frequency=5.194e-01	minor_base=A	minor_cov=27/35	new_cov=27/35	polymorphism_frequency=4.806e-01	polymorphism_score=193.0	prediction=polymorphism	ref_cov=30/37	total_cov=58/73
RA	400	.	NC_000913	1429759	0	G	A	bias_e_value=1965600	bias_p_value=0.423471	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.7	fisher_strand_p_value=1	frequency=4.621e-01	ks_quality_p_value=0.14421	major_base=G	major_cov=31/40	major_frequency=5.379e-01	minor_base=A	minor_cov=27/34	new_cov=27/34	polymorphism_frequency=4.621e-01	polymorphism_score=183.2	prediction=polymorphism	ref_cov=31/40	total_cov=58/74
RA	401	.	NC_000913	1429767	0	C	T	bias_e_value=2123320	bias_p_value=0.457449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.6	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.162321	major_base=C	major_cov=32/40	major_frequency=5.455e-01	minor_base=T	minor_cov=26/34	new_cov=26/34	polymorphism_frequency=4.545e-01	polymorphism_score=166.2	prediction=polymorphism	ref_cov=32/40	total_cov=59/74
RA	402	.	NC_000913	1429780	0	A	G	bias_e_value=784407	bias_p_value=0.168993	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.6	fisher_strand_p_value=0.860163	frequency=4.394e-01	ks_quality_p_value=0.0465888	major_base=A	major_cov=34/40	major_frequency=5.606e-01	minor_base=G	minor_cov=25/33	new_cov=25/33	polymorphism_frequency=4.394e-01	polymorphism_score=179.3	prediction=polymorphism	ref_cov=34/40	total_cov=59/73
RA	403	.	NC_000913	1429783	0	G	A	bias_e_value=101629	bias_p_value=0.0218951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.3	fisher_strand_p_value=1	frequency=4.470e-01	ks_quality_p_value=0.00325446	major_base=G	major_cov=33/40	major_frequency=5.530e-01	minor_base=A	minor_cov=26/33	new_cov=26/33	polymorphism_frequency=4.470e-01	polymorphism_score=179.1	prediction=polymorphism	ref_cov=33/40	total_cov=59/73
RA	404	.	NC_000913	1429816	0	C	T	bias_e_value=2645440	bias_p_value=0.569936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.6	fisher_strand_p_value=0.369293	frequency=4.062e-01	ks_quality_p_value=0.626338	major_base=C	major_cov=39/37	major_frequency=5.938e-01	minor_base=T	minor_cov=22/30	new_cov=22/30	polymorphism_frequency=4.062e-01	polymorphism_score=147.0	prediction=polymorphism	ref_cov=39/37	total_cov=61/67
RA	405	.	NC_000913	1429820	0	A	G	bias_e_value=3404040	bias_p_value=0.733368	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.7	fisher_strand_p_value=0.366819	frequency=3.920e-01	ks_quality_p_value=0.996393	major_base=A	major_cov=39/37	major_frequency=6.080e-01	minor_base=G	minor_cov=21/28	new_cov=21/28	polymorphism_frequency=3.920e-01	polymorphism_score=135.0	prediction=polymorphism	ref_cov=39/37	total_cov=60/65
RA	406	.	NC_000913	1429823	0	A	C	bias_e_value=3366720	bias_p_value=0.725327	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.9	fisher_strand_p_value=0.366819	frequency=3.920e-01	ks_quality_p_value=0.974848	major_base=A	major_cov=39/37	major_frequency=6.080e-01	minor_base=C	minor_cov=21/28	new_cov=21/28	polymorphism_frequency=3.920e-01	polymorphism_score=137.5	prediction=polymorphism	ref_cov=39/37	total_cov=60/65
RA	407	.	NC_000913	1429851	0	G	A	bias_e_value=327730	bias_p_value=0.0706064	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=0.558153	frequency=3.448e-01	ks_quality_p_value=0.0237666	major_base=G	major_cov=40/36	major_frequency=6.552e-01	minor_base=A	minor_cov=18/22	new_cov=18/22	polymorphism_frequency=3.448e-01	polymorphism_score=109.8	prediction=polymorphism	ref_cov=40/36	total_cov=58/58
RA	408	.	NC_000913	1429858	0	C	T	bias_e_value=2814420	bias_p_value=0.606341	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.5	fisher_strand_p_value=0.544319	frequency=3.333e-01	ks_quality_p_value=0.472367	major_base=C	major_cov=37/35	major_frequency=6.667e-01	minor_base=T	minor_cov=16/20	new_cov=16/20	polymorphism_frequency=3.333e-01	polymorphism_score=92.8	prediction=polymorphism	ref_cov=37/35	total_cov=53/55
RA	409	.	NC_000913	1429861	0	G	C	bias_e_value=2412380	bias_p_value=0.519724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.7	fisher_strand_p_value=0.540618	frequency=3.364e-01	ks_quality_p_value=0.367465	major_base=G	major_cov=37/34	major_frequency=6.636e-01	minor_base=C	minor_cov=16/20	new_cov=16/20	polymorphism_frequency=3.364e-01	polymorphism_score=125.4	prediction=polymorphism	ref_cov=37/34	total_cov=53/55
RA	410	.	NC_000913	1429863	0	A	G	bias_e_value=676878	bias_p_value=0.145827	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.1	fisher_strand_p_value=0.421995	frequency=3.426e-01	ks_quality_p_value=0.0783777	major_base=A	major_cov=37/34	major_frequency=6.574e-01	minor_base=G	minor_cov=16/21	new_cov=16/21	polymorphism_frequency=3.426e-01	polymorphism_score=104.7	prediction=polymorphism	ref_cov=37/34	total_cov=53/55
RA	411	.	NC_000913	1429888	0	C	T	bias_e_value=162009	bias_p_value=0.0349033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.9	fisher_strand_p_value=1	frequency=2.178e-01	ks_quality_p_value=0.00565162	major_base=C	major_cov=38/41	major_frequency=7.822e-01	minor_base=T	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=2.178e-01	polymorphism_score=52.6	prediction=polymorphism	ref_cov=38/41	total_cov=51/54
RA	412	.	NC_000913	1478295	0	C	T	bias_e_value=3246520	bias_p_value=0.699432	consensus_score=42.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.333237	major_base=T	major_cov=3/10	major_frequency=9.286e-01	minor_base=A	minor_cov=0/1	new_cov=3/10	polymorphism_frequency=9.286e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=3/11
RA	413	.	NC_000913	1494388	0	C	.	consensus_score=177.0	frequency=1	major_base=.	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	414	.	NC_000913	1515342	0	G	A	consensus_score=147.1	frequency=1	major_base=A	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	415	.	NC_000913	1517508	0	G	T	consensus_score=83.4	frequency=1	major_base=T	major_cov=19/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/6
RA	416	.	NC_000913	1521520	0	G	A	consensus_score=108.6	frequency=1	major_base=A	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	417	.	NC_000913	1592893	0	G	A	consensus_score=151.7	frequency=1	major_base=A	major_cov=23/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	418	.	NC_000913	1631845	0	G	A	consensus_score=86.8	frequency=1	major_base=A	major_cov=16/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/10
RA	419	.	NC_000913	1634569	0	A	T	bias_e_value=3432720	bias_p_value=0.739548	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.9	fisher_strand_p_value=0.537128	frequency=5.500e-01	ks_quality_p_value=0.691991	major_base=T	major_cov=11/11	major_frequency=5.500e-01	minor_base=A	minor_cov=7/11	new_cov=11/11	polymorphism_frequency=5.500e-01	polymorphism_score=60.3	prediction=polymorphism	ref_cov=7/11	total_cov=18/22
RA	420	.	NC_000913	1634571	0	C	T	bias_e_value=3753370	bias_p_value=0.808627	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.2	fisher_strand_p_value=0.535902	frequency=5.122e-01	ks_quality_p_value=0.838069	major_base=T	major_cov=11/10	major_frequency=5.122e-01	minor_base=C	minor_cov=8/12	new_cov=11/10	polymorphism_frequency=5.122e-01	polymorphism_score=57.2	prediction=polymorphism	ref_cov=8/12	total_cov=19/22
RA	421	.	NC_000913	1634578	0	T	C	bias_e_value=1839870	bias_p_value=0.396384	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.1	fisher_strand_p_value=0.535902	frequency=5.366e-01	ks_quality_p_value=0.243639	major_base=C	major_cov=12/10	major_frequency=5.366e-01	minor_base=T	minor_cov=8/11	new_cov=12/10	polymorphism_frequency=5.366e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=8/11	total_cov=20/22
RA	422	.	NC_000913	1634597	0	C	A	bias_e_value=4299000	bias_p_value=0.92618	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.76738	frequency=5.532e-01	ks_quality_p_value=0.835634	major_base=A	major_cov=12/14	major_frequency=5.532e-01	minor_base=C	minor_cov=8/13	new_cov=12/14	polymorphism_frequency=5.532e-01	polymorphism_score=63.7	prediction=polymorphism	ref_cov=8/13	total_cov=20/27
RA	423	.	NC_000913	1634658	0	A	G	bias_e_value=1972610	bias_p_value=0.424981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.0	fisher_strand_p_value=0.282928	frequency=5.556e-01	ks_quality_p_value=0.512467	major_base=G	major_cov=16/14	major_frequency=5.556e-01	minor_base=A	minor_cov=9/15	new_cov=16/14	polymorphism_frequency=5.556e-01	polymorphism_score=68.8	prediction=polymorphism	ref_cov=9/15	total_cov=25/29
RA	424	.	NC_000913	1634661	0	C	G	bias_e_value=1411610	bias_p_value=0.304118	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.282928	frequency=5.556e-01	ks_quality_p_value=0.3143	major_base=G	major_cov=16/14	major_frequency=5.556e-01	minor_base=C	minor_cov=9/15	new_cov=16/14	polymorphism_frequency=5.556e-01	polymorphism_score=89.7	prediction=polymorphism	ref_cov=9/15	total_cov=25/29
RA	425	.	NC_000913	1634676	0	A	G	bias_e_value=2848280	bias_p_value=0.613635	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.4	fisher_strand_p_value=0.3978	frequency=5.600e-01	ks_quality_p_value=0.659954	major_base=G	major_cov=14/14	major_frequency=5.600e-01	minor_base=A	minor_cov=8/14	new_cov=14/14	polymorphism_frequency=5.600e-01	polymorphism_score=62.8	prediction=polymorphism	ref_cov=8/14	total_cov=22/28
RA	426	.	NC_000913	1634699	0	A	C	bias_e_value=2077310	bias_p_value=0.447537	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.1	fisher_strand_p_value=0.556717	frequency=5.227e-01	ks_quality_p_value=0.281865	major_base=C	major_cov=11/12	major_frequency=5.227e-01	minor_base=A	minor_cov=8/13	new_cov=11/12	polymorphism_frequency=5.227e-01	polymorphism_score=59.3	prediction=polymorphism	ref_cov=8/13	total_cov=19/25
RA	427	.	NC_000913	1634724	0	G	A	bias_e_value=3112010	bias_p_value=0.670454	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.0	fisher_strand_p_value=0.345395	frequency=4.359e-01	ks_quality_p_value=0.891084	major_base=G	major_cov=8/14	major_frequency=5.641e-01	minor_base=A	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=4.359e-01	polymorphism_score=46.6	prediction=polymorphism	ref_cov=8/14	total_cov=17/22
RA	428	.	NC_000913	1634769	0	T	A	bias_e_value=1978270	bias_p_value=0.426199	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.7	fisher_strand_p_value=0.285163	frequency=4.839e-01	ks_quality_p_value=0.510664	major_base=T	major_cov=5/11	major_frequency=5.161e-01	minor_base=A	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=4.839e-01	polymorphism_score=47.2	prediction=polymorphism	ref_cov=5/11	total_cov=14/18
RA	429	.	NC_000913	1634778	0	T	G	bias_e_value=3861520	bias_p_value=0.831929	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.2	fisher_strand_p_value=0.479488	frequency=4.839e-01	ks_quality_p_value=1	major_base=T	major_cov=6/10	major_frequency=5.161e-01	minor_base=G	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=4.839e-01	polymorphism_score=40.9	prediction=polymorphism	ref_cov=6/10	total_cov=14/17
RA	430	.	NC_000913	1634799	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=A	major_cov=7/6	major_frequency=5.000e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=5.000e-01	polymorphism_score=31.8	prediction=polymorphism	ref_cov=7/6	total_cov=15/11
RA	431	.	NC_000913	1635974	0	T	G	bias_e_value=2891350	bias_p_value=0.622914	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.8	fisher_strand_p_value=1	frequency=4.328e-01	ks_quality_p_value=0.269537	major_base=T	major_cov=20/18	major_frequency=5.672e-01	minor_base=G	minor_cov=16/13	new_cov=16/13	polymorphism_frequency=4.328e-01	polymorphism_score=84.7	prediction=polymorphism	ref_cov=20/18	total_cov=36/31
RA	432	.	NC_000913	1636068	0	T	C	bias_e_value=4394750	bias_p_value=0.946806	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.6	fisher_strand_p_value=1	frequency=4.648e-01	ks_quality_p_value=0.69209	major_base=T	major_cov=20/18	major_frequency=5.352e-01	minor_base=C	minor_cov=18/15	new_cov=18/15	polymorphism_frequency=4.648e-01	polymorphism_score=103.6	prediction=polymorphism	ref_cov=20/18	total_cov=38/33
RA	433	.	NC_000913	1636074	0	C	T	bias_e_value=307667	bias_p_value=0.0662838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.7	fisher_strand_p_value=0.816521	frequency=4.583e-01	ks_quality_p_value=0.0150323	major_base=C	major_cov=20/19	major_frequency=5.417e-01	minor_base=T	minor_cov=18/15	new_cov=18/15	polymorphism_frequency=4.583e-01	polymorphism_score=93.8	prediction=polymorphism	ref_cov=20/19	total_cov=38/34
RA	434	.	NC_000913	1636128	0	C	T	bias_e_value=3862890	bias_p_value=0.832224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.7	fisher_strand_p_value=0.801413	frequency=4.000e-01	ks_quality_p_value=0.598804	major_base=C	major_cov=19/20	major_frequency=6.000e-01	minor_base=T	minor_cov=14/12	new_cov=14/12	polymorphism_frequency=4.000e-01	polymorphism_score=71.5	prediction=polymorphism	ref_cov=19/20	total_cov=33/33
RA	435	.	NC_000913	1636145	0	T	C	bias_e_value=3255890	bias_p_value=0.70145	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.0	fisher_strand_p_value=0.403198	frequency=3.455e-01	ks_quality_p_value=0.831053	major_base=T	major_cov=16/20	major_frequency=6.545e-01	minor_base=C	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=3.455e-01	polymorphism_score=50.3	prediction=polymorphism	ref_cov=16/20	total_cov=27/28
RA	436	.	NC_000913	1636173	0	T	C	bias_e_value=3640790	bias_p_value=0.784373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.9	fisher_strand_p_value=0.47098	frequency=2.195e-01	ks_quality_p_value=0.891813	major_base=T	major_cov=13/19	major_frequency=7.805e-01	minor_base=C	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=2.195e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=13/19	total_cov=19/23
RA	437	.	NC_000913	1636455	0	G	A	bias_e_value=851091	bias_p_value=0.183359	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.0	fisher_strand_p_value=0.148878	frequency=2.250e-01	ks_quality_p_value=0.299687	major_base=G	major_cov=16/15	major_frequency=7.750e-01	minor_base=A	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.250e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=16/15	total_cov=18/22
RA	438	.	NC_000913	1636484	0	C	T	bias_e_value=3529180	bias_p_value=0.760329	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.5	fisher_strand_p_value=0.755331	frequency=3.043e-01	ks_quality_p_value=0.52071	major_base=C	major_cov=14/18	major_frequency=6.957e-01	minor_base=T	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=3.043e-01	polymorphism_score=31.9	prediction=polymorphism	ref_cov=14/18	total_cov=21/25
RA	439	.	NC_000913	1636503	0	T	C	bias_e_value=4626400	bias_p_value=0.996715	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.8	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.920044	major_base=T	major_cov=16/16	major_frequency=6.667e-01	minor_base=C	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=3.333e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=16/16	total_cov=24/24
RA	440	.	NC_000913	1652331	0	T	C	consensus_score=73.0	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	441	.	NC_000913	1667887	0	C	.	bias_e_value=3505120	bias_p_value=0.755145	consensus_score=205.4	fisher_strand_p_value=0.416667	frequency=1	ks_quality_p_value=0.930709	major_base=.	major_cov=19/28	major_frequency=9.792e-01	minor_base=A	minor_cov=1/0	new_cov=19/28	polymorphism_frequency=9.792e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	442	.	NC_000913	1744751	0	C	.	consensus_score=74.2	frequency=1	major_base=.	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	443	.	NC_000913	1748093	0	C	T	consensus_score=127.7	frequency=1	major_base=T	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	444	.	NC_000913	1749123	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=153.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/22	major_frequency=9.778e-01	minor_base=G	minor_cov=0/1	new_cov=22/22	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	445	.	NC_000913	1750502	0	C	T	consensus_score=108.6	frequency=1	major_base=T	major_cov=21/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/14
RA	446	.	NC_000913	1750572	0	C	T	consensus_score=136.9	frequency=1	major_base=T	major_cov=26/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/14
RA	447	.	NC_000913	1752116	0	C	T	consensus_score=66.8	frequency=1	major_base=T	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	448	.	NC_000913	1757109	0	A	G	consensus_score=75.4	frequency=1	major_base=G	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	449	.	NC_000913	1772389	0	C	T	bias_e_value=4641390	bias_p_value=0.999944	consensus_score=90.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989474	major_base=T	major_cov=13/14	major_frequency=9.643e-01	minor_base=A	minor_cov=1/0	new_cov=13/14	polymorphism_frequency=9.643e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	450	.	NC_000913	1776234	0	C	T	consensus_score=62.2	frequency=1	major_base=T	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	451	.	NC_000913	1781148	0	C	T	bias_e_value=3876510	bias_p_value=0.835157	consensus_score=232.8	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=0.99628	major_base=T	major_cov=33/36	major_frequency=9.857e-01	minor_base=A	minor_cov=1/0	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	452	.	NC_000913	1789643	0	C	T	bias_e_value=4588050	bias_p_value=0.988452	consensus_score=73.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.851925	major_base=T	major_cov=16/8	major_frequency=9.231e-01	minor_base=C	minor_cov=1/1	new_cov=16/8	polymorphism_frequency=9.231e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=1/1	total_cov=17/9
RA	453	.	NC_000913	1794304	0	C	T	bias_e_value=4641420	bias_p_value=0.999949	consensus_score=93.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989931	major_base=T	major_cov=19/12	major_frequency=9.118e-01	minor_base=C	minor_cov=2/1	new_cov=19/12	polymorphism_frequency=9.118e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/1	total_cov=22/13
RA	454	.	NC_000913	1802144	0	C	T	consensus_score=108.1	frequency=1	major_base=T	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	455	.	NC_000913	1807825	0	C	T	consensus_score=104.2	frequency=1	major_base=T	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	456	.	NC_000913	1810624	0	C	T	consensus_score=81.7	frequency=1	major_base=T	major_cov=9/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/15
RA	457	.	NC_000913	1816002	0	C	T	consensus_score=99.1	frequency=1	major_base=T	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	458	.	NC_000913	1820949	0	C	T	consensus_score=73.6	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	459	.	NC_000913	1823332	0	C	T	consensus_score=113.2	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	460	.	NC_000913	1828824	0	C	T	consensus_score=162.9	frequency=1	major_base=T	major_cov=32/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/14
RA	461	.	NC_000913	1831373	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=119.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/30	major_frequency=9.730e-01	minor_base=G	minor_cov=0/1	new_cov=6/30	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/31
RA	462	.	NC_000913	1831664	0	C	T	bias_e_value=4591260	bias_p_value=0.989143	consensus_score=129.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.856305	major_base=T	major_cov=18/21	major_frequency=9.750e-01	minor_base=C	minor_cov=0/1	new_cov=18/21	polymorphism_frequency=9.750e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=19/22
RA	463	.	NC_000913	1833493	0	C	T	consensus_score=60.7	frequency=1	major_base=T	major_cov=6/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/14
RA	464	.	NC_000913	1842475	0	C	T	consensus_score=117.4	frequency=1	major_base=T	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	465	.	NC_000913	1843339	0	C	T	bias_e_value=3658530	bias_p_value=0.788196	consensus_score=96.0	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=0.979523	major_base=T	major_cov=17/12	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=17/12	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	466	.	NC_000913	1844565	0	C	T	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=52.9	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=7/10	major_frequency=9.444e-01	minor_base=G	minor_cov=1/0	new_cov=7/10	polymorphism_frequency=9.444e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	467	.	NC_000913	1845513	0	C	T	consensus_score=131.9	frequency=1	major_base=T	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	468	.	NC_000913	1850545	0	C	T	bias_e_value=3791220	bias_p_value=0.816783	consensus_score=121.0	fisher_strand_p_value=0.459459	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/20	major_frequency=9.730e-01	minor_base=G	minor_cov=1/0	new_cov=16/20	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	469	.	NC_000913	1851614	0	C	T	bias_e_value=1155020	bias_p_value=0.248839	consensus_score=125.5	fisher_strand_p_value=0.498258	frequency=1	ks_quality_p_value=0.135013	major_base=T	major_cov=22/18	major_frequency=9.524e-01	minor_base=C	minor_cov=2/0	new_cov=22/18	polymorphism_frequency=9.524e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=2/0	total_cov=24/18
RA	470	.	NC_000913	1855005	0	C	T	consensus_score=62.7	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	471	.	NC_000913	1857164	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=98.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/13	major_frequency=9.706e-01	minor_base=C	minor_cov=1/0	new_cov=20/13	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=21/14
RA	472	.	NC_000913	1858800	0	C	T	consensus_score=75.4	frequency=1	major_base=T	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	473	.	NC_000913	1866710	0	C	T	consensus_score=93.0	frequency=1	major_base=T	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	474	.	NC_000913	1871516	0	C	T	consensus_score=60.1	frequency=1	major_base=T	major_cov=6/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/12
RA	475	.	NC_000913	1914009	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=84.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/12	major_frequency=9.630e-01	minor_base=C	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/12
RA	476	.	NC_000913	1916210	0	C	T	consensus_score=44.1	frequency=1	major_base=T	major_cov=7/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/7
RA	477	.	NC_000913	1950945	0	G	A	consensus_score=101.8	frequency=1	major_base=A	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	478	.	NC_000913	1951285	0	G	A	consensus_score=126.7	frequency=1	major_base=A	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	479	.	NC_000913	1951576	0	G	A	consensus_score=79.8	frequency=1	major_base=A	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	480	.	NC_000913	1953546	0	G	A	consensus_score=171.9	frequency=1	major_base=A	major_cov=21/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/26
RA	481	.	NC_000913	1978243	0	G	T	consensus_score=63.6	frequency=1	major_base=T	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	482	.	NC_000913	1982189	0	G	A	consensus_score=196.1	frequency=1	major_base=A	major_cov=23/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/32
RA	483	.	NC_000913	1983899	0	G	A	bias_e_value=3891460	bias_p_value=0.838377	consensus_score=131.4	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/20	major_frequency=9.767e-01	minor_base=C	minor_cov=0/1	new_cov=22/20	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	484	.	NC_000913	2003264	0	C	T	consensus_score=126.4	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	485	.	NC_000913	2032423	0	G	A	consensus_score=151.5	frequency=1	major_base=A	major_cov=27/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/19
RA	486	.	NC_000913	2173363	0	C	.	bias_e_value=2928950	bias_p_value=0.631015	consensus_score=77.2	fisher_strand_p_value=0.3	frequency=1	ks_quality_p_value=0.919238	major_base=.	major_cov=14/5	major_frequency=9.500e-01	minor_base=C	minor_cov=0/1	new_cov=14/5	polymorphism_frequency=9.500e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/1	total_cov=14/6
RA	487	.	NC_000913	2173364	0	C	.	bias_e_value=3069020	bias_p_value=0.661192	consensus_score=76.7	fisher_strand_p_value=0.3	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=14/5	major_frequency=9.500e-01	minor_base=C	minor_cov=0/1	new_cov=14/5	polymorphism_frequency=9.500e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=14/6
RA	488	.	NC_000913	2242121	0	A	G	consensus_score=148.3	frequency=1	major_base=G	major_cov=26/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/20
RA	489	.	NC_000913	2259422	0	A	C	consensus_score=113.3	frequency=1	major_base=C	major_cov=15/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/16
RA	490	.	NC_000913	2397444	0	G	A	consensus_score=173.6	frequency=1	major_base=A	major_cov=31/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	491	.	NC_000913	2434882	0	T	G	bias_e_value=268.02	bias_p_value=5.77425e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.4	fisher_strand_p_value=4.32492e-06	frequency=3.684e-01	ks_quality_p_value=1	major_base=T	major_cov=6/18	major_frequency=6.316e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.684e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=6/18	total_cov=20/18
RA	492	.	NC_000913	3224628	0	C	T	bias_e_value=2555900	bias_p_value=0.550644	consensus_score=195.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.218377	major_base=T	major_cov=35/24	major_frequency=9.672e-01	minor_base=C	minor_cov=1/1	new_cov=35/24	polymorphism_frequency=9.672e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=36/27
RA	493	.	NC_000913	3268970	0	A	G	consensus_score=81.0	frequency=1	major_base=G	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	494	.	NC_000913	3319705	0	A	G	consensus_score=249.4	frequency=1	major_base=G	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	495	.	NC_000913	3320867	0	C	T	consensus_score=87.6	frequency=1	major_base=T	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	496	.	NC_000913	3323477	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=223.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/32	major_frequency=9.710e-01	minor_base=C	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	497	.	NC_000913	3331507	0	C	T	bias_e_value=3945550	bias_p_value=0.850031	consensus_score=199.9	fisher_strand_p_value=0.505024	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/34	major_frequency=9.677e-01	minor_base=C	minor_cov=0/2	new_cov=26/34	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=26/36
RA	498	.	NC_000913	3337144	0	C	T	bias_e_value=4641580	bias_p_value=0.999985	consensus_score=121.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994616	major_base=T	major_cov=20/18	major_frequency=9.744e-01	minor_base=C	minor_cov=1/0	new_cov=20/18	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=21/19
RA	499	.	NC_000913	3346861	0	C	T	bias_e_value=3813180	bias_p_value=0.821514	consensus_score=87.3	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.997704	major_base=T	major_cov=13/16	major_frequency=9.667e-01	minor_base=G	minor_cov=1/0	new_cov=13/16	polymorphism_frequency=9.667e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	500	.	NC_000913	3350292	0	C	T	consensus_score=119.8	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	501	.	NC_000913	3360240	0	C	T	bias_e_value=4640780	bias_p_value=0.999812	consensus_score=134.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980677	major_base=T	major_cov=14/26	major_frequency=9.756e-01	minor_base=C	minor_cov=0/1	new_cov=14/26	polymorphism_frequency=9.756e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=14/29
RA	502	.	NC_000913	3360951	0	C	T	consensus_score=50.6	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	503	.	NC_000913	3361564	0	C	T	bias_e_value=3747840	bias_p_value=0.807436	consensus_score=63.1	fisher_strand_p_value=0.45	frequency=1	ks_quality_p_value=0.994751	major_base=T	major_cov=8/11	major_frequency=9.500e-01	minor_base=G	minor_cov=1/0	new_cov=8/11	polymorphism_frequency=9.500e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	504	.	NC_000913	3362459	0	C	T	consensus_score=110.7	frequency=1	major_base=T	major_cov=20/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/13
RA	505	.	NC_000913	3363653	0	C	T	consensus_score=115.0	frequency=1	major_base=T	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	506	.	NC_000913	3383369	0	C	T	consensus_score=165.2	frequency=1	major_base=T	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	507	.	NC_000913	3397982	0	C	T	consensus_score=163.8	frequency=1	major_base=T	major_cov=30/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/16
RA	508	.	NC_000913	3406476	0	C	T	bias_e_value=4631130	bias_p_value=0.997734	consensus_score=145.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.933441	major_base=T	major_cov=29/19	major_frequency=9.796e-01	minor_base=A	minor_cov=1/0	new_cov=29/19	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/19
RA	509	.	NC_000913	3432173	0	G	A	consensus_score=108.1	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	510	.	NC_000913	3439614	0	G	A	consensus_score=48.2	frequency=1	major_base=A	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	511	.	NC_000913	3445876	0	G	A	consensus_score=233.9	frequency=1	major_base=A	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	512	.	NC_000913	3446190	0	G	A	bias_e_value=2253030	bias_p_value=0.485395	consensus_score=92.8	fisher_strand_p_value=0.178571	frequency=1	ks_quality_p_value=0.997358	major_base=A	major_cov=23/4	major_frequency=9.643e-01	minor_base=G	minor_cov=0/1	new_cov=23/4	polymorphism_frequency=9.643e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/1	total_cov=23/5
RA	513	.	NC_000913	3449865	0	G	A	consensus_score=137.2	frequency=1	major_base=A	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	514	.	NC_000913	3454722	0	T	C	consensus_score=92.1	frequency=1	major_base=C	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	515	.	NC_000913	3459326	0	G	A	consensus_score=168.5	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	516	.	NC_000913	3469561	0	G	A	consensus_score=141.7	frequency=1	major_base=A	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	517	.	NC_000913	3469763	0	G	A	consensus_score=98.4	frequency=1	major_base=A	major_cov=12/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/16
RA	518	.	NC_000913	3486205	0	C	A	bias_e_value=3958370	bias_p_value=0.852793	consensus_score=146.0	fisher_strand_p_value=0.509091	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/18	major_frequency=9.556e-01	minor_base=C	minor_cov=2/0	new_cov=25/18	polymorphism_frequency=9.556e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=28/18
RA	519	.	NC_000913	3496485	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=228.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999548	major_base=A	major_cov=32/34	major_frequency=9.851e-01	minor_base=T	minor_cov=0/1	new_cov=32/34	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	520	.	NC_000913	3506702	0	G	A	consensus_score=139.0	frequency=1	major_base=A	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	521	.	NC_000913	3511870	0	G	A	bias_e_value=3162220	bias_p_value=0.681271	consensus_score=128.3	fisher_strand_p_value=0.317073	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/12	major_frequency=9.756e-01	minor_base=C	minor_cov=0/1	new_cov=28/12	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/13
RA	522	.	NC_000913	3514651	0	G	A	consensus_score=211.3	frequency=1	major_base=A	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	523	.	NC_000913	3541403	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=196.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/38	major_frequency=9.701e-01	minor_base=C	minor_cov=1/1	new_cov=27/38	polymorphism_frequency=9.701e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=30/39
RA	524	.	NC_000913	3560455	1	.	G	bias_e_value=3860430	bias_p_value=0.831693	consensus_score=170.0	fisher_strand_p_value=0.479167	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=22/25	major_frequency=9.792e-01	minor_base=.	minor_cov=1/0	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=23/25
RA	525	.	NC_000913	3564733	0	G	A	consensus_score=171.7	frequency=1	major_base=A	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	526	.	NC_000913	3573001	0	G	A	consensus_score=150.8	frequency=1	major_base=A	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	527	.	NC_000913	3575597	0	G	A	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=190.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997406	major_base=A	major_cov=30/25	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=30/25	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	528	.	NC_000913	3587922	0	G	A	bias_e_value=2995460	bias_p_value=0.645344	consensus_score=209.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.287072	major_base=A	major_cov=30/29	major_frequency=9.833e-01	minor_base=G	minor_cov=1/0	new_cov=30/29	polymorphism_frequency=9.833e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=31/29
RA	529	.	NC_000913	3587957	0	G	A	bias_e_value=4636260	bias_p_value=0.998838	consensus_score=188.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.952179	major_base=A	major_cov=30/27	major_frequency=9.828e-01	minor_base=G	minor_cov=1/0	new_cov=30/27	polymorphism_frequency=9.828e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=32/27
RA	530	.	NC_000913	3595740	0	G	A	bias_e_value=2798140	bias_p_value=0.602834	consensus_score=177.5	fisher_strand_p_value=0.254545	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/13	major_frequency=9.818e-01	minor_base=C	minor_cov=0/1	new_cov=41/13	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/14
RA	531	.	NC_000913	3602478	0	T	C	bias_e_value=3680480	bias_p_value=0.792925	consensus_score=188.7	fisher_strand_p_value=0.431373	frequency=1	ks_quality_p_value=0.996868	major_base=C	major_cov=21/29	major_frequency=9.804e-01	minor_base=A	minor_cov=1/0	new_cov=21/29	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	532	.	NC_000913	3603367	0	G	A	consensus_score=163.7	frequency=1	major_base=A	major_cov=16/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/31
RA	533	.	NC_000913	3647997	0	G	A	consensus_score=71.1	frequency=1	major_base=A	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	534	.	NC_000913	3786064	0	G	A	consensus_score=120.2	frequency=1	major_base=A	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	535	.	NC_000913	3788378	0	C	T	consensus_score=184.1	frequency=1	major_base=T	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	536	.	NC_000913	3790380	0	C	T	consensus_score=110.7	frequency=1	major_base=T	major_cov=24/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/8
RA	537	.	NC_000913	3796150	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=169.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/30	major_frequency=9.800e-01	minor_base=T	minor_cov=0/1	new_cov=19/30	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/31
RA	538	.	NC_000913	3802483	0	G	A	consensus_score=54.1	frequency=1	major_base=A	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	539	.	NC_000913	3830893	0	A	G	bias_e_value=3897510	bias_p_value=0.839681	consensus_score=183.5	fisher_strand_p_value=0.490196	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=26/24	major_frequency=9.804e-01	minor_base=T	minor_cov=0/1	new_cov=26/24	polymorphism_frequency=9.804e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	540	.	NC_000913	3841368	0	C	T	bias_e_value=2538150	bias_p_value=0.54682	consensus_score=107.1	fisher_strand_p_value=0.215873	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/15	major_frequency=9.444e-01	minor_base=G	minor_cov=0/2	new_cov=19/15	polymorphism_frequency=9.444e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	541	.	NC_000913	3841478	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=112.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/22	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=13/22	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/23
RA	542	.	NC_000913	3852000	0	C	T	bias_e_value=3898730	bias_p_value=0.839945	consensus_score=188.0	fisher_strand_p_value=0.490566	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/25	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=27/25	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	543	.	NC_000913	3868421	0	C	T	bias_e_value=4612760	bias_p_value=0.993776	consensus_score=147.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.890527	major_base=T	major_cov=21/25	major_frequency=9.583e-01	minor_base=C	minor_cov=1/1	new_cov=21/25	polymorphism_frequency=9.583e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=22/26
RA	544	.	NC_000913	3871577	0	C	T	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=102.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998219	major_base=T	major_cov=14/19	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=14/19	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/20
RA	545	.	NC_000913	3873336	0	C	T	bias_e_value=4504810	bias_p_value=0.97052	consensus_score=228.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.767222	major_base=T	major_cov=38/29	major_frequency=9.710e-01	minor_base=C	minor_cov=1/1	new_cov=38/29	polymorphism_frequency=9.710e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/1	total_cov=39/31
RA	546	.	NC_000913	3880045	0	C	T	bias_e_value=3804150	bias_p_value=0.819569	consensus_score=89.8	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.997358	major_base=T	major_cov=12/15	major_frequency=9.643e-01	minor_base=A	minor_cov=1/0	new_cov=12/15	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	547	.	NC_000913	3886749	0	G	A	bias_e_value=3887480	bias_p_value=0.837521	consensus_score=126.1	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/18	major_frequency=9.744e-01	minor_base=G	minor_cov=0/1	new_cov=20/18	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/19
RA	548	.	NC_000913	3891231	0	G	A	consensus_score=83.8	frequency=1	major_base=A	major_cov=8/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/21
RA	549	.	NC_000913	3891677	0	G	A	consensus_score=113.5	frequency=1	major_base=A	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	550	.	NC_000913	3892396	0	C	T	consensus_score=107.7	frequency=1	major_base=T	major_cov=23/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/9
RA	551	.	NC_000913	3895645	0	C	T	bias_e_value=4226840	bias_p_value=0.910633	consensus_score=197.5	fisher_strand_p_value=0.608209	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/34	major_frequency=9.559e-01	minor_base=G	minor_cov=2/1	new_cov=31/34	polymorphism_frequency=9.559e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/35
RA	552	.	NC_000913	3896116	0	C	T	consensus_score=190.6	frequency=1	major_base=T	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	553	.	NC_000913	3898302	0	G	A	consensus_score=69.3	frequency=1	major_base=A	major_cov=17/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/8
RA	554	.	NC_000913	3949826	0	G	A	bias_e_value=4631340	bias_p_value=0.997779	consensus_score=65.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.934091	major_base=A	major_cov=11/11	major_frequency=9.167e-01	minor_base=G	minor_cov=1/1	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=12/12
RA	555	.	NC_000913	3953554	0	G	A	bias_e_value=4605400	bias_p_value=0.99219	consensus_score=118.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.877655	major_base=A	major_cov=3/32	major_frequency=9.459e-01	minor_base=G	minor_cov=0/2	new_cov=3/32	polymorphism_frequency=9.459e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/2	total_cov=3/35
RA	556	.	NC_000913	3956739	0	C	T	consensus_score=167.6	frequency=1	major_base=T	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	557	.	NC_000913	3957961	0	G	A	consensus_score=165.3	frequency=1	major_base=A	major_cov=19/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/30
RA	558	.	NC_000913	3960596	0	G	A	consensus_score=125.4	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	559	.	NC_000913	4027754	0	G	A	bias_e_value=1647680	bias_p_value=0.354976	consensus_score=161.6	fisher_strand_p_value=0.110988	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/23	major_frequency=9.434e-01	minor_base=G	minor_cov=0/3	new_cov=27/23	polymorphism_frequency=9.434e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/3	total_cov=27/27
RA	560	.	NC_000913	4146389	1	.	T	consensus_score=148.0	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	561	.	NC_000913	4161093	0	C	T	bias_e_value=4638970	bias_p_value=0.999421	consensus_score=88.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966177	major_base=T	major_cov=15/15	major_frequency=9.677e-01	minor_base=A	minor_cov=0/1	new_cov=15/15	polymorphism_frequency=9.677e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=15/16
RA	562	.	NC_000913	4206024	0	G	A	consensus_score=148.8	frequency=1	major_base=A	major_cov=31/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/16
RA	563	.	NC_000913	4207461	0	G	A	consensus_score=142.4	frequency=1	major_base=A	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	564	.	NC_000913	4209562	0	G	A	consensus_score=20.9	frequency=1	major_base=A	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	565	.	NC_000913	4236742	0	C	T	bias_e_value=3505650	bias_p_value=0.75526	consensus_score=160.7	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=0.991342	major_base=T	major_cov=28/17	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=28/17	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	566	.	NC_000913	4246296	0	C	T	consensus_score=72.5	frequency=1	major_base=T	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	567	.	NC_000913	4281878	0	C	T	consensus_score=72.2	frequency=1	major_base=T	major_cov=5/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/17
RA	568	.	NC_000913	4296268	0	T	C	bias_e_value=1717940	bias_p_value=0.370115	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.0	fisher_strand_p_value=0.703567	frequency=5.000e-01	ks_quality_p_value=0.167677	major_base=T	major_cov=5/9	major_frequency=5.000e-01	minor_base=C	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=5.000e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=5/9	total_cov=12/18
RA	569	.	NC_000913	4296286	0	C	T	bias_e_value=4604410	bias_p_value=0.991977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.6	fisher_strand_p_value=1	frequency=3.200e-01	ks_quality_p_value=0.876032	major_base=C	major_cov=5/12	major_frequency=6.800e-01	minor_base=T	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.200e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=5/12	total_cov=8/18
RA	570	.	NC_000913	4296380	1	.	C	consensus_score=99.3	frequency=1	major_base=C	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	571	.	NC_000913	4296380	2	.	G	consensus_score=100.6	frequency=1	major_base=G	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	572	.	NC_000913	4352327	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=133.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/21	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=16/21	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	573	.	NC_000913	4371696	0	C	T	consensus_score=160.5	frequency=1	major_base=T	major_cov=19/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/28
RA	574	.	NC_000913	4429371	0	C	T	consensus_score=138.5	frequency=1	major_base=T	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	575	.	NC_000913	4537366	0	C	T	bias_e_value=3454800	bias_p_value=0.744304	consensus_score=136.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.376525	major_base=T	major_cov=20/21	major_frequency=9.762e-01	minor_base=C	minor_cov=0/1	new_cov=20/21	polymorphism_frequency=9.762e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=20/22
RA	576	.	NC_000913	4542683	0	T	.	consensus_score=127.6	frequency=1	major_base=.	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
MC	577	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=2	right_outside_cov=34
MC	578	.	NC_000913	1196347	1211482	0	0	left_inside_cov=4	left_outside_cov=5	right_inside_cov=4	right_outside_cov=5
MC	579	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=1	right_outside_cov=33
MC	580	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=16	right_inside_cov=0	right_outside_cov=17
MC	581	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=22	right_inside_cov=0	right_outside_cov=20
MC	582	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=60	right_inside_cov=2	right_outside_cov=62
MC	583	.	NC_000913	3423873	3424435	359	197	left_inside_cov=4	left_outside_cov=5	right_inside_cov=4	right_outside_cov=5
MC	584	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=42	right_inside_cov=1	right_outside_cov=43
JC	585	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=245	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=244	max_min_left=122	max_min_left_minus=122	max_min_left_plus=85	max_min_right=123	max_min_right_minus=123	max_min_right_plus=99	max_pos_hash_score=490	max_right=250	max_right_minus=250	max_right_plus=185	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.52	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=245	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	586	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1	max_left=239	max_left_minus=205	max_left_plus=239	max_min_left=123	max_min_left_minus=112	max_min_left_plus=123	max_min_right=116	max_min_right_minus=116	max_min_right_plus=103	max_pos_hash_score=490	max_right=237	max_right_minus=229	max_right_plus=237	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35
JC	587	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1	max_left=249	max_left_minus=216	max_left_plus=249	max_min_left=108	max_min_left_minus=96	max_min_left_plus=108	max_min_right=121	max_min_right_minus=121	max_min_right_plus=114	max_pos_hash_score=490	max_right=242	max_right_minus=242	max_right_plus=228	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.69	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=28
JC	588	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=17	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=237	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=224	max_left_minus=224	max_left_plus=220	max_min_left=115	max_min_left_minus=111	max_min_left_plus=115	max_min_right=119	max_min_right_minus=96	max_min_right_plus=119	max_pos_hash_score=474	max_right=241	max_right_minus=241	max_right_plus=229	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	589	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0	max_left=240	max_left_minus=240	max_left_plus=234	max_min_left=119	max_min_left_minus=119	max_min_left_plus=110	max_min_right=124	max_min_right_minus=124	max_min_right_plus=114	max_pos_hash_score=490	max_right=242	max_right_minus=242	max_right_plus=221	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.83	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	590	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=20	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0	max_left=230	max_left_minus=230	max_left_plus=229	max_min_left=124	max_min_left_minus=99	max_min_left_plus=124	max_min_right=108	max_min_right_minus=106	max_min_right_plus=108	max_pos_hash_score=488	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	591	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=245	key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1	max_left=243	max_left_minus=243	max_left_plus=238	max_min_left=104	max_min_left_minus=104	max_min_left_plus=100	max_min_right=124	max_min_right_minus=124	max_min_right_plus=112	max_pos_hash_score=490	max_right=249	max_right_minus=249	max_right_plus=243	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=43	polymorphism_frequency=NA	pos_hash_score=41	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=42
JC	592	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0	max_left=240	max_left_minus=233	max_left_plus=240	max_min_left=116	max_min_left_minus=116	max_min_left_plus=112	max_min_right=123	max_min_right_minus=123	max_min_right_plus=105	max_pos_hash_score=488	max_right=224	max_right_minus=200	max_right_plus=224	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.79	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	593	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=243	key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1	max_left=233	max_left_minus=231	max_left_plus=233	max_min_left=118	max_min_left_minus=118	max_min_left_plus=115	max_min_right=115	max_min_right_minus=111	max_min_right_plus=115	max_pos_hash_score=486	max_right=242	max_right_minus=237	max_right_plus=242	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=37	polymorphism_frequency=NA	pos_hash_score=37	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37
JC	594	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=2.689e-01	junction_possible_overlap_registers=243	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=236	max_left_minus=222	max_left_plus=236	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=96	max_min_right_minus=95	max_min_right_plus=96	max_pos_hash_score=486	max_right=96	max_right_minus=95	max_right_plus=96	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.32	new_junction_read_count=13	polymorphism_frequency=2.689e-01	pos_hash_score=8	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=2	side_1_possible_overlap_registers=245	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=8
JC	595	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1	max_left=230	max_left_minus=220	max_left_plus=230	max_min_left=123	max_min_left_minus=83	max_min_left_plus=123	max_min_right=116	max_min_right_minus=103	max_min_right_plus=116	max_pos_hash_score=490	max_right=241	max_right_minus=241	max_right_plus=225	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.64	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	596	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=21	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1	max_left=226	max_left_minus=226	max_left_plus=226	max_min_left=122	max_min_left_minus=122	max_min_left_plus=104	max_min_right=115	max_min_right_minus=115	max_min_right_plus=84	max_pos_hash_score=488	max_right=243	max_right_minus=243	max_right_plus=243	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37
JC	597	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=244	max_left_minus=244	max_left_plus=230	max_min_left=122	max_min_left_minus=93	max_min_left_plus=122	max_min_right=123	max_min_right_minus=123	max_min_right_plus=107	max_pos_hash_score=490	max_right=244	max_right_minus=234	max_right_plus=244	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	598	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=14	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=212	max_min_left=103	max_min_left_minus=103	max_min_left_plus=90	max_min_right=118	max_min_right_minus=115	max_min_right_plus=118	max_pos_hash_score=470	max_right=219	max_right_minus=210	max_right_plus=219	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.82	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	599	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=9	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=184	max_min_left=118	max_min_left_minus=116	max_min_left_plus=118	max_min_right=98	max_min_right_minus=97	max_min_right_plus=98	max_pos_hash_score=482	max_right=246	max_right_minus=246	max_right_plus=238	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.40	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=16
JC	600	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0	max_left=231	max_left_minus=196	max_left_plus=231	max_min_left=121	max_min_left_minus=121	max_min_left_plus=116	max_min_right=116	max_min_right_minus=116	max_min_right_plus=99	max_pos_hash_score=488	max_right=246	max_right_minus=228	max_right_plus=246	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.72	new_junction_read_count=29	polymorphism_frequency=9.667e-01	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=1	side_1_possible_overlap_registers=245	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=27
JC	601	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=230	max_left_minus=199	max_left_plus=230	max_min_left=107	max_min_left_minus=95	max_min_left_plus=107	max_min_right=108	max_min_right_minus=57	max_min_right_plus=108	max_pos_hash_score=490	max_right=246	max_right_minus=219	max_right_plus=246	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.54	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=245	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	602	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0	max_left=243	max_left_minus=235	max_left_plus=243	max_min_left=110	max_min_left_minus=110	max_min_left_plus=103	max_min_right=119	max_min_right_minus=119	max_min_right_plus=101	max_pos_hash_score=486	max_right=232	max_right_minus=232	max_right_plus=204	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	603	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0	max_left=249	max_left_minus=241	max_left_plus=249	max_min_left=118	max_min_left_minus=109	max_min_left_plus=118	max_min_right=122	max_min_right_minus=115	max_min_right_plus=122	max_pos_hash_score=490	max_right=220	max_right_minus=220	max_right_plus=213	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	604	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0	max_left=245	max_left_minus=245	max_left_plus=231	max_min_left=117	max_min_left_minus=83	max_min_left_plus=117	max_min_right=122	max_min_right_minus=101	max_min_right_plus=122	max_pos_hash_score=488	max_right=219	max_right_minus=219	max_right_plus=215	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	605	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0	max_left=240	max_left_minus=240	max_left_plus=229	max_min_left=121	max_min_left_minus=114	max_min_left_plus=121	max_min_right=108	max_min_right_minus=108	max_min_right_plus=108	max_pos_hash_score=490	max_right=247	max_right_minus=247	max_right_plus=240	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	606	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=248	max_left_minus=201	max_left_plus=248	max_min_left=119	max_min_left_minus=119	max_min_left_plus=38	max_min_right=99	max_min_right_minus=99	max_min_right_plus=3	max_pos_hash_score=490	max_right=249	max_right_minus=249	max_right_plus=226	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.49	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	607	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0	max_left=237	max_left_minus=237	max_left_plus=229	max_min_left=124	max_min_left_minus=124	max_min_left_plus=113	max_min_right=123	max_min_right_minus=107	max_min_right_plus=123	max_pos_hash_score=490	max_right=244	max_right_minus=244	max_right_plus=214	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	608	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1	max_left=248	max_left_minus=248	max_left_plus=228	max_min_left=116	max_min_left_minus=116	max_min_left_plus=109	max_min_right=115	max_min_right_minus=115	max_min_right_plus=96	max_pos_hash_score=488	max_right=246	max_right_minus=246	max_right_plus=226	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	609	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=232	max_left_minus=232	max_left_plus=214	max_min_left=120	max_min_left_minus=120	max_min_left_plus=111	max_min_right=91	max_min_right_minus=91	max_min_right_plus=76	max_pos_hash_score=490	max_right=244	max_right_minus=244	max_right_plus=238	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	610	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0	max_left=243	max_left_minus=228	max_left_plus=243	max_min_left=122	max_min_left_minus=113	max_min_left_plus=122	max_min_right=119	max_min_right_minus=119	max_min_right_plus=95	max_pos_hash_score=488	max_right=247	max_right_minus=244	max_right_plus=247	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.84	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	611	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0	max_left=244	max_left_minus=238	max_left_plus=244	max_min_left=122	max_min_left_minus=122	max_min_left_plus=0	max_min_right=116	max_min_right_minus=116	max_min_right_plus=54	max_pos_hash_score=490	max_right=248	max_right_minus=248	max_right_plus=54	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.54	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	612	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1	max_left=244	max_left_minus=218	max_left_plus=244	max_min_left=123	max_min_left_minus=123	max_min_left_plus=122	max_min_right=105	max_min_right_minus=105	max_min_right_plus=99	max_pos_hash_score=490	max_right=240	max_right_minus=240	max_right_plus=236	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=41
JC	613	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=32	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=237	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=219	max_min_left=119	max_min_left_minus=117	max_min_left_plus=119	max_min_right=106	max_min_right_minus=106	max_min_right_plus=100	max_pos_hash_score=474	max_right=229	max_right_minus=229	max_right_plus=216	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.52	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	614	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0	max_left=248	max_left_minus=239	max_left_plus=248	max_min_left=112	max_min_left_minus=92	max_min_left_plus=112	max_min_right=121	max_min_right_minus=121	max_min_right_plus=119	max_pos_hash_score=488	max_right=236	max_right_minus=187	max_right_plus=236	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	615	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=24	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0	max_left=241	max_left_minus=230	max_left_plus=241	max_min_left=110	max_min_left_minus=110	max_min_left_plus=109	max_min_right=120	max_min_right_minus=120	max_min_right_plus=118	max_pos_hash_score=486	max_right=235	max_right_minus=235	max_right_plus=230	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	616	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1	max_left=243	max_left_minus=243	max_left_plus=238	max_min_left=95	max_min_left_minus=95	max_min_left_plus=46	max_min_right=116	max_min_right_minus=116	max_min_right_plus=116	max_pos_hash_score=490	max_right=240	max_right_minus=240	max_right_plus=230	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.66	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	617	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1	max_left=243	max_left_minus=224	max_left_plus=243	max_min_left=118	max_min_left_minus=118	max_min_left_plus=92	max_min_right=118	max_min_right_minus=118	max_min_right_plus=110	max_pos_hash_score=488	max_right=237	max_right_minus=227	max_right_plus=237	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=37	polymorphism_frequency=9.477e-01	pos_hash_score=34	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=36
JC	618	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=19	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=241	max_min_left=119	max_min_left_minus=119	max_min_left_plus=116	max_min_right=124	max_min_right_minus=105	max_min_right_plus=124	max_pos_hash_score=488	max_right=243	max_right_minus=243	max_right_plus=231	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=39	polymorphism_frequency=9.745e-01	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=39
JC	619	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=241	max_min_left=113	max_min_left_minus=113	max_min_left_plus=107	max_min_right=125	max_min_right_minus=113	max_min_right_plus=125	max_pos_hash_score=490	max_right=248	max_right_minus=248	max_right_plus=242	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=45
JC	620	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=247	max_left_minus=227	max_left_plus=247	max_min_left=111	max_min_left_minus=103	max_min_left_plus=111	max_min_right=121	max_min_right_minus=116	max_min_right_plus=121	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=212	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=46
UN	621	.	NC_000913	15579	15579
UN	622	.	NC_000913	15581	15581
UN	623	.	NC_000913	15583	16527
UN	624	.	NC_000913	16529	16529
UN	625	.	NC_000913	16533	16533
UN	626	.	NC_000913	16540	16540
UN	627	.	NC_000913	16543	16543
UN	628	.	NC_000913	19990	20370
UN	629	.	NC_000913	20373	20375
UN	630	.	NC_000913	223899	223899
UN	631	.	NC_000913	223902	224539
UN	632	.	NC_000913	224544	224544
UN	633	.	NC_000913	224546	224546
UN	634	.	NC_000913	225127	225381
UN	635	.	NC_000913	225383	225385
UN	636	.	NC_000913	225387	225387
UN	637	.	NC_000913	227160	227160
UN	638	.	NC_000913	227165	227165
UN	639	.	NC_000913	227167	227167
UN	640	.	NC_000913	227169	227170
UN	641	.	NC_000913	227172	228454
UN	642	.	NC_000913	257908	258683
UN	643	.	NC_000913	270758	271086
UN	644	.	NC_000913	271096	271096
UN	645	.	NC_000913	274164	274990
UN	646	.	NC_000913	279385	279722
UN	647	.	NC_000913	279725	279725
UN	648	.	NC_000913	279728	279728
UN	649	.	NC_000913	290837	290837
UN	650	.	NC_000913	290839	290841
UN	651	.	NC_000913	290843	291197
UN	652	.	NC_000913	315426	315431
UN	653	.	NC_000913	315433	315433
UN	654	.	NC_000913	315435	315435
UN	655	.	NC_000913	315437	316277
UN	656	.	NC_000913	316279	316279
UN	657	.	NC_000913	316288	316288
UN	658	.	NC_000913	316291	316292
UN	659	.	NC_000913	316294	316294
UN	660	.	NC_000913	357819	357820
UN	661	.	NC_000913	357824	357931
UN	662	.	NC_000913	381447	381448
UN	663	.	NC_000913	381456	381457
UN	664	.	NC_000913	381459	382382
UN	665	.	NC_000913	382390	382390
UN	666	.	NC_000913	382396	382397
UN	667	.	NC_000913	382401	382402
UN	668	.	NC_000913	382406	382406
UN	669	.	NC_000913	382409	382409
UN	670	.	NC_000913	391877	391878
UN	671	.	NC_000913	391881	391881
UN	672	.	NC_000913	391885	391885
UN	673	.	NC_000913	391887	391887
UN	674	.	NC_000913	391891	392748
UN	675	.	NC_000913	526092	526092
UN	676	.	NC_000913	526100	526510
UN	677	.	NC_000913	526512	526512
UN	678	.	NC_000913	566990	566990
UN	679	.	NC_000913	566994	566998
UN	680	.	NC_000913	567000	567819
UN	681	.	NC_000913	574776	575571
UN	682	.	NC_000913	575574	575585
UN	683	.	NC_000913	575587	575589
UN	684	.	NC_000913	578729	578729
UN	685	.	NC_000913	578809	578809
UN	686	.	NC_000913	578831	578831
UN	687	.	NC_000913	579099	579099
UN	688	.	NC_000913	580115	580115
UN	689	.	NC_000913	580119	580120
UN	690	.	NC_000913	580302	580302
UN	691	.	NC_000913	583481	583482
UN	692	.	NC_000913	583490	583491
UN	693	.	NC_000913	583496	583496
UN	694	.	NC_000913	583498	583498
UN	695	.	NC_000913	583502	583502
UN	696	.	NC_000913	583508	583508
UN	697	.	NC_000913	583573	583573
UN	698	.	NC_000913	583586	583586
UN	699	.	NC_000913	583588	583588
UN	700	.	NC_000913	583594	583594
UN	701	.	NC_000913	583603	583603
UN	702	.	NC_000913	583606	583606
UN	703	.	NC_000913	608215	608217
UN	704	.	NC_000913	608221	609132
UN	705	.	NC_000913	686037	686039
UN	706	.	NC_000913	686041	686043
UN	707	.	NC_000913	686045	686048
UN	708	.	NC_000913	686050	686051
UN	709	.	NC_000913	686054	686080
UN	710	.	NC_000913	686082	686082
UN	711	.	NC_000913	688076	688843
UN	712	.	NC_000913	807299	807302
UN	713	.	NC_000913	807307	807309
UN	714	.	NC_000913	807311	807330
UN	715	.	NC_000913	807336	807338
UN	716	.	NC_000913	807340	807367
UN	717	.	NC_000913	1094451	1094455
UN	718	.	NC_000913	1094457	1094457
UN	719	.	NC_000913	1094459	1095296
UN	720	.	NC_000913	1095298	1095298
UN	721	.	NC_000913	1097036	1097036
UN	722	.	NC_000913	1097053	1097053
UN	723	.	NC_000913	1097057	1097057
UN	724	.	NC_000913	1097069	1097069
UN	725	.	NC_000913	1097077	1097077
UN	726	.	NC_000913	1097091	1097091
UN	727	.	NC_000913	1097138	1097138
UN	728	.	NC_000913	1104012	1104012
UN	729	.	NC_000913	1129289	1129289
UN	730	.	NC_000913	1196314	1196314
UN	731	.	NC_000913	1196326	1211488
UN	732	.	NC_000913	1211491	1211492
UN	733	.	NC_000913	1211496	1211496
UN	734	.	NC_000913	1211504	1211504
UN	735	.	NC_000913	1211506	1211506
UN	736	.	NC_000913	1294035	1294175
UN	737	.	NC_000913	1299499	1300697
UN	738	.	NC_000913	1303073	1303084
UN	739	.	NC_000913	1311147	1311149
UN	740	.	NC_000913	1311154	1311191
UN	741	.	NC_000913	1311194	1311194
UN	742	.	NC_000913	1396245	1396245
UN	743	.	NC_000913	1396247	1397052
UN	744	.	NC_000913	1397054	1397057
UN	745	.	NC_000913	1397059	1397059
UN	746	.	NC_000913	1424292	1424292
UN	747	.	NC_000913	1429069	1429069
UN	748	.	NC_000913	1429072	1429072
UN	749	.	NC_000913	1429114	1429114
UN	750	.	NC_000913	1429128	1429128
UN	751	.	NC_000913	1429225	1429225
UN	752	.	NC_000913	1429228	1429228
UN	753	.	NC_000913	1429231	1429231
UN	754	.	NC_000913	1429235	1429236
UN	755	.	NC_000913	1429240	1429240
UN	756	.	NC_000913	1429243	1429243
UN	757	.	NC_000913	1429246	1429246
UN	758	.	NC_000913	1429682	1429682
UN	759	.	NC_000913	1429753	1429753
UN	760	.	NC_000913	1429756	1429756
UN	761	.	NC_000913	1432857	1432993
UN	762	.	NC_000913	1433001	1433001
UN	763	.	NC_000913	1433766	1433933
UN	764	.	NC_000913	1433935	1433935
UN	765	.	NC_000913	1433938	1433938
UN	766	.	NC_000913	1433945	1433945
UN	767	.	NC_000913	1433951	1433951
UN	768	.	NC_000913	1468120	1469056
UN	769	.	NC_000913	1469457	1470334
UN	770	.	NC_000913	1470340	1470340
UN	771	.	NC_000913	1528534	1528939
UN	772	.	NC_000913	1571066	1571127
UN	773	.	NC_000913	1633319	1633428
UN	774	.	NC_000913	1633430	1633430
UN	775	.	NC_000913	1633433	1633433
UN	776	.	NC_000913	1633464	1633464
UN	777	.	NC_000913	1634236	1634236
UN	778	.	NC_000913	1634240	1634240
UN	779	.	NC_000913	1634251	1634252
UN	780	.	NC_000913	1634254	1634426
UN	781	.	NC_000913	1634482	1634482
UN	782	.	NC_000913	1634484	1634484
UN	783	.	NC_000913	1634569	1634569
UN	784	.	NC_000913	1634578	1634578
UN	785	.	NC_000913	1634597	1634597
UN	786	.	NC_000913	1634676	1634676
UN	787	.	NC_000913	1634799	1634799
UN	788	.	NC_000913	1651047	1651047
UN	789	.	NC_000913	1651054	1651349
UN	790	.	NC_000913	1978495	1979270
UN	791	.	NC_000913	2066924	2067098
UN	792	.	NC_000913	2067103	2067105
UN	793	.	NC_000913	2067107	2067107
UN	794	.	NC_000913	2067115	2067115
UN	795	.	NC_000913	2067119	2067119
UN	796	.	NC_000913	2067123	2067123
UN	797	.	NC_000913	2069149	2070062
UN	798	.	NC_000913	2101966	2102735
UN	799	.	NC_000913	2170381	2170382
UN	800	.	NC_000913	2170384	2170384
UN	801	.	NC_000913	2170387	2170387
UN	802	.	NC_000913	2170389	2171237
UN	803	.	NC_000913	2289137	2289139
UN	804	.	NC_000913	2289144	2289919
UN	805	.	NC_000913	2514480	2515417
UN	806	.	NC_000913	2515419	2515419
UN	807	.	NC_000913	2515421	2515421
UN	808	.	NC_000913	2515425	2515425
UN	809	.	NC_000913	2515427	2515427
UN	810	.	NC_000913	2515435	2515435
UN	811	.	NC_000913	2515457	2515457
UN	812	.	NC_000913	2558699	2565488
UN	813	.	NC_000913	2726282	2726282
UN	814	.	NC_000913	2726287	2726288
UN	815	.	NC_000913	2726291	2729015
UN	816	.	NC_000913	2729018	2729018
UN	817	.	NC_000913	2729023	2729023
UN	818	.	NC_000913	2729029	2729029
UN	819	.	NC_000913	2729048	2729048
UN	820	.	NC_000913	2729791	2730748
UN	821	.	NC_000913	2996563	2997485
UN	822	.	NC_000913	2997488	2997488
UN	823	.	NC_000913	3130324	3130326
UN	824	.	NC_000913	3130328	3130328
UN	825	.	NC_000913	3130335	3131115
UN	826	.	NC_000913	3131117	3131117
UN	827	.	NC_000913	3186322	3186322
UN	828	.	NC_000913	3186328	3187215
UN	829	.	NC_000913	3187217	3187218
UN	830	.	NC_000913	3187222	3187223
UN	831	.	NC_000913	3187225	3187225
UN	832	.	NC_000913	3187235	3187236
UN	833	.	NC_000913	3365741	3365741
UN	834	.	NC_000913	3365745	3365745
UN	835	.	NC_000913	3365751	3365751
UN	836	.	NC_000913	3365754	3365754
UN	837	.	NC_000913	3365759	3365759
UN	838	.	NC_000913	3365761	3366521
UN	839	.	NC_000913	3366524	3366524
UN	840	.	NC_000913	3423277	3423277
UN	841	.	NC_000913	3423863	3423863
UN	842	.	NC_000913	3423867	3423870
UN	843	.	NC_000913	3423872	3424446
UN	844	.	NC_000913	3424448	3424448
UN	845	.	NC_000913	3424875	3426665
UN	846	.	NC_000913	3426667	3426667
UN	847	.	NC_000913	3426670	3426670
UN	848	.	NC_000913	3426695	3426695
UN	849	.	NC_000913	3427025	3428340
UN	850	.	NC_000913	3428343	3428343
UN	851	.	NC_000913	3470377	3470380
UN	852	.	NC_000913	3470382	3470382
UN	853	.	NC_000913	3470385	3470498
UN	854	.	NC_000913	3470500	3470502
UN	855	.	NC_000913	3583616	3583616
UN	856	.	NC_000913	3583624	3583985
UN	857	.	NC_000913	3619501	3620869
UN	858	.	NC_000913	3620872	3620873
UN	859	.	NC_000913	3620876	3620876
UN	860	.	NC_000913	3621293	3621294
UN	861	.	NC_000913	3621298	3622078
UN	862	.	NC_000913	3652246	3653037
UN	863	.	NC_000913	3666572	3666663
UN	864	.	NC_000913	3682261	3682294
UN	865	.	NC_000913	3762405	3762405
UN	866	.	NC_000913	3762409	3762409
UN	867	.	NC_000913	3762414	3762415
UN	868	.	NC_000913	3762417	3762418
UN	869	.	NC_000913	3762421	3763872
UN	870	.	NC_000913	3764271	3764271
UN	871	.	NC_000913	3764288	3764289
UN	872	.	NC_000913	3764294	3764294
UN	873	.	NC_000913	3764296	3765060
UN	874	.	NC_000913	3765065	3765067
UN	875	.	NC_000913	3799295	3799295
UN	876	.	NC_000913	3799300	3799311
UN	877	.	NC_000913	3799354	3799354
UN	878	.	NC_000913	3862670	3862670
UN	879	.	NC_000913	3942247	3943178
UN	880	.	NC_000913	3944267	3945370
UN	881	.	NC_000913	4035385	4035585
UN	882	.	NC_000913	4035974	4036890
UN	883	.	NC_000913	4037247	4037248
UN	884	.	NC_000913	4037250	4037251
UN	885	.	NC_000913	4037253	4037254
UN	886	.	NC_000913	4037256	4037256
UN	887	.	NC_000913	4037261	4037261
UN	888	.	NC_000913	4037606	4037626
UN	889	.	NC_000913	4037630	4037630
UN	890	.	NC_000913	4037632	4037632
UN	891	.	NC_000913	4038036	4038470
UN	892	.	NC_000913	4038936	4039171
UN	893	.	NC_000913	4039600	4039600
UN	894	.	NC_000913	4039605	4039605
UN	895	.	NC_000913	4039613	4040388
UN	896	.	NC_000913	4040390	4040390
UN	897	.	NC_000913	4040392	4040393
UN	898	.	NC_000913	4040397	4040398
UN	899	.	NC_000913	4040400	4040400
UN	900	.	NC_000913	4166534	4166635
UN	901	.	NC_000913	4166639	4166639
UN	902	.	NC_000913	4166772	4166772
UN	903	.	NC_000913	4166846	4166846
UN	904	.	NC_000913	4166857	4166858
UN	905	.	NC_000913	4166861	4166861
UN	906	.	NC_000913	4166868	4167992
UN	907	.	NC_000913	4168758	4168758
UN	908	.	NC_000913	4168762	4168762
UN	909	.	NC_000913	4168765	4168765
UN	910	.	NC_000913	4168772	4171461
UN	911	.	NC_000913	4176752	4176752
UN	912	.	NC_000913	4176754	4176888
UN	913	.	NC_000913	4176894	4176895
UN	914	.	NC_000913	4176897	4176897
UN	915	.	NC_000913	4208298	4209533
UN	916	.	NC_000913	4210221	4210222
UN	917	.	NC_000913	4210224	4212909
UN	918	.	NC_000913	4212912	4212912
UN	919	.	NC_000913	4296268	4296268
UN	920	.	NC_000913	4378802	4378802
UN	921	.	NC_000913	4378878	4378878
UN	922	.	NC_000913	4378881	4378882
UN	923	.	NC_000913	4378888	4378891
UN	924	.	NC_000913	4378907	4378907
UN	925	.	NC_000913	4378911	4378911
UN	926	.	NC_000913	4378918	4378918
UN	927	.	NC_000913	4378920	4378920
UN	928	.	NC_000913	4378922	4378926
UN	929	.	NC_000913	4378928	4378928
UN	930	.	NC_000913	4378944	4378944
UN	931	.	NC_000913	4378949	4378950
UN	932	.	NC_000913	4378962	4378962
UN	933	.	NC_000913	4498372	4498372
UN	934	.	NC_000913	4498377	4498377
UN	935	.	NC_000913	4498379	4498383
UN	936	.	NC_000913	4498388	4498388
UN	937	.	NC_000913	4498390	4499290
UN	938	.	NC_000913	4507650	4507651
UN	939	.	NC_000913	4507663	4507663
UN	940	.	NC_000913	4507666	4508478
UN	941	.	NC_000913	4538109	4538110
UN	942	.	NC_000913	4538113	4538115
UN	943	.	NC_000913	4538117	4538157
UN	944	.	NC_000913	4538159	4538159