| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,446,190 | G→A | A119V (GCT→GTT) | rpsH ← | 30S ribosomal subunit protein S8 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,446,190 | 0 | G | A | 96.4% | 92.8 / ‑6.3 | 28 | A119V (GCT→GTT) | rpsH | 30S ribosomal subunit protein S8 |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (23/4); total (23/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
AGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAA > NC_000913/3445946‑3446400 | aGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGgc < 2:284668/251‑1 (MQ=255) gCCCAACCGGCTGCGTAACCATCACGCGGACCGAAGGTGAGGGTATTATCTGCATGTTTAACGTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTTCCTTTGATCGTAATAACCTGACCGTTGATTTTTGCGTCAACGCCGTTAGTAACAACTACCGGTGCTTTAGCAACACGGGACATTGTGTCCCCCGATTAGGCGACGTAGCAGATAATTGCGCGTCCAAGACCAACCTGGCGCGCTg < 2:246682/250‑1 (MQ=255) gTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGAta > 2:231231/1‑248 (MQ=255) gTCTGCGTAACCATAACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATc > 1:104113/1‑249 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAac > 1:13565/1‑251 (MQ=255) ccATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACAcc < 1:205755/251‑1 (MQ=255) cATCACGCGGACCTAAGGTCAGGGTATTATCTGCATGTTTAACTTCAATAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGAACGTTGATTTTTACGTCAACGCCGGCAGGAACTACGACCGGTGCTTTATCATCACGAGACATTTTTTCCTCCGATTAGTCTACGTAGCATATAATTTCGCCACCTAGTCTAGCCTTGCGCGCTTTACGATTAGTCATAACACCt < 1:145868/251‑1 (MQ=255) aCCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACCCCTTTAGAGGTAg < 1:59150/251‑1 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGaa > 1:216632/1‑250 (MQ=255) ggTCAGGGTATTATCTGAATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGACGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAaaca > 1:417337/1‑250 (MQ=255) attatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATAc > 2:90876/1‑251 (MQ=255) gTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGcc > 1:145614/1‑251 (MQ=255) cTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACt > 1:140143/1‑251 (MQ=255) ttCAACCGCATCGTTGAGAGTAAGAGTCAGCTCGCAGTTTTTACCTCTGATCGTAATAACCTGACCGTCGATTTTTATGTCAACGCTGGCAGGAACAACGACCGGCGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGACACCAAGACTAACCTGGCGCGCTGCACGAACAGCCATAACACCTTTAGAGGTAAAAACAACTGCGATAACCAGACACGCCATAACtt > 2:266099/1‑251 (MQ=255) gTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTATGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCAt > 1:176780/1‑251 (MQ=255) cGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATgcgc > 2:155594/1‑251 (MQ=255) cGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATgcgc > 1:13496/1‑248 (MQ=255) ttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTgg > 1:373577/1‑251 (MQ=255) aCCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGggc > 2:39789/1‑251 (MQ=255) cGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGacac > 1:4484/1‑251 (MQ=255) gCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTACTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTgg > 1:198433/1‑250 (MQ=255) gACCGGCGCTTTCGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCCCGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGATTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGACCTGGAAATACTTCAGAGTa > 2:384064/1‑250 (MQ=255) tGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCACCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTcc > 1:319383/1‑250 (MQ=255) tttAGCAACACGAGACATTTTTTCCTACGATTAGGCTACGTAGCAGATAATATCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTAATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGCCCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGCGTAAGTTCCNGtt > 2:382541/1‑251 (MQ=255) ttCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCa > 2:331160/1‑250 (MQ=255) gATTATGCTACGTAGCAGATAATTTCGCCACCAAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTaa > 2:168033/1‑250 (MQ=255) caccaAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCtt > 2:70006/1‑202 (MQ=255) ccaAGACCAACCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTc > 1:27164/1‑206 (MQ=255) | AGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGAAACAACTGCGATACCCAGACCCGCCATAACTTTCGGCAGCTCATCTTTACGTTTATAGATGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAA > NC_000913/3445946‑3446400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |