mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 6,368 | G→A | S31F (TCC→TTC) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| RA | 22,796 | G→A | G136S (GGT→AGT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 25,374 | G→A | A56A (GCG→GCA) | lspA → | lipoprotein signal peptidase |
| RA | 26,931 | G→A | V219M (GTG→ATG) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 30,326 | G→A | E226K (GAA→AAA) | carA → | carbamoyl‑phosphate synthetase small subunit |
| RA | 34,521 | G→A | Q74Q (CAG→CAA) | caiF → | DNA‑binding transcriptional activator CaiF |
| RA | 58,044 | G→A | K227K (AAG→AAA) | djlA → | co‑chaperone protein DjlA |
| RA | 59,295 | G→A | intergenic (+16/+392) | yabQ → / ← rluA | protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase |
| RA | 61,932 | G→A | Q445* (CAG→TAG) | rapA ← | RNA polymerase‑binding ATPase and RNAP recycling factor |
| RA | 75,749 | G→A | H517H (CAC→CAT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 80,413 | T→C | H151R (CAC→CGC) | leuC ← | 3‑isopropylmalate dehydratase subunit LeuC |
| RA | 87,729 | G→A | A125T (GCA→ACA) | ilvH → | acetolactate synthase/acetohydroxybutanoate synthase, regulatory subunit |
| RA | 98,436 | C→T | R12C (CGC→TGC) | ftsW → | peptidoglycan glycosyltransferase FtsW |
| RA | 112,666 | T→C | D185G (GAT→GGT) | coaE ← | dephospho‑CoA kinase |
| RA | 115,017 | G→A | R236R (CGC→CGT) | hofC ← | inner membrane protein HofC |
| RA | 131,517 | G→A | intergenic (‑257/‑98) | yacH ← / → acnB | DUF3300 domain‑containing protein YacH/AcnB |
| RA | 134,947 | G→A | I212I (ATC→ATT) | speD ← | S‑adenosylmethionine decarboxylase proenzyme |
| RA | 144,163 | C→T | S154S (TCC→TCT) | yadH → | putative ABC transporter membrane subunit YadH |
| RA | 145,144 | C→T | P22S (CCT→TCT) | yadE → | putative polysaccharide deacetylase lipoprotein YadE |
| RA | 157,279 | C→T | A152T (GCA→ACA) | folK ← | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase |
| RA | 159,061 | C→T | Q22Q (CAG→CAA) | pcnB ← | poly(A) polymerase I |
| RA | 159,971 | C→T | G48S (GGT→AGT) | gluQ ← | glutamyl‑Q tRNA(Asp) synthetase |
| RA | 162,659 | C→T | R185R (CGC→CGT) | hrpB → | RNA‑dependent NTPase HrpB |
| RA | 171,222 | C→T | F216F (TTC→TTT) | fhuD → | iron(III) hydroxamate ABC transporter periplasmic binding protein |
| RA | 173,721 | C→T | D388N (GAC→AAC) | hemL ← | glutamate‑1‑semialdehyde 2,1‑aminomutase |
| RA | 181,564 | C→T | T227T (ACC→ACT) | degP → | periplasmic serine endoprotease DegP |
| RA | 202,488 | G→A | V130I (GTT→ATT) | fabZ → | 3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase |
| RA | 209,650 | A→G | intergenic (+70/‑29) | accA → / → ldcC | acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2 |
| RA | 211,411 | C→T | P578L (CCC→CTC) | ldcC → | lysine decarboxylase 2 |
| RA | 211,536 | C→T | P620S (CCA→TCA) | ldcC → | lysine decarboxylase 2 |
| RA | 213,688 | C→T | S82N (AGC→AAC) | rof ← | modulator of Rho‑dependent transcription termination |
| RA | 214,607 | C→T | T106I (ACC→ATC) | yaeQ → | uncharacterized protein YaeQ |
| RA | 215,947 | C→T | P227S (CCC→TCC) | nlpE → | sensor lipoprotein NlpE |
| RA | 218,136 | C→T | A214T (GCG→ACG) | proS ← | proline‑‑tRNA ligase |
| RA | 222,784 | C→T | intergenic (‑139/‑49) | metN ← / → gmhB | L‑methionine/D‑methionine ABC transporter ATP binding subunit/D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase |
| RA | 232,646 | C→T | G437D (GGC→GAC) | mltD ← | membrane‑bound lytic murein transglycosylase D |
| RA | 237,310 | A→G | intergenic (+303/‑25) | aspV → / → yafT | tRNA‑Asp/lipoprotein YafT |
| RA | 239,802 | C→T | E130K (GAA→AAA) | yafV ← | 2‑oxoglutaramate amidase |
| RA | 240,993 | C→T | D771N (GAT→AAT) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| RA | 250,724 | C→T | intergenic (+2590/‑174) | rayT → / → dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| RA | 251,069 | C→T | P58S (CCG→TCG) | dinB → | DNA polymerase IV |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 258,986 | C→T | pseudogene (311/331 nt) | crl → | RNA polymerase holoenzyme assembly factor Crl |
| RA | 279,397 | C→T | V95V (GTG→GTA) | insB2 ← | IS1 family protein InsB |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 286,737 | G→A | G448D (GGC→GAC) | yagG → | putative D‑xylonate transporter YagG |
| RA | 286,741 | G→A | E449E (GAG→GAA) | yagG → | putative D‑xylonate transporter YagG |
| RA | 303,936 | C→T | E83K (GAA→AAA) | ykgJ ← | putative metal‑chelating domain‑containing protein YkgJ |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 359,642 | G→A | A52T (GCG→ACG) | cynS → | cyanase |
| RA | 377,292 | C→T | P174L (CCT→CTT) | yaiL → | DUF2058 domain‑containing protein YaiL |
| RA | 379,592 | G→A | intergenic (‑21/+14) | frmA ← / ← frmR | S‑(hydroxymethyl)glutathione dehydrogenase/DNA‑binding transcriptional repressor FrmR |
| RA | 393,962 | C→T | pseudogene (993/1449 nt) | yaiT → | putative autotransporter YaiT |
| RA | 402,101 | G→A | D119N (GAC→AAC) | phoA → | alkaline phosphatase |
| RA | 424,981 | C→T | intergenic (‑63/‑30) | acpH ← / → queA | acyl carrier protein phosphodiesterase/tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase |
| RA | 466,884 | G→A | A143A (GCC→GCT) | ybaE ← | uncharacterized protein YbaE |
| RA | 469,175 | G→A | R102Q (CGG→CAG) | mdlA → | ABC transporter family protein MdlA |
| RA | 472,100 | C→T | R489C (CGC→TGC) | mdlB → | ABC transporter family protein MdlB |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 502,527 | C→T | V238I (GTT→ATT) | ybaL ← | putative transporter YbaL |
| RA | 538,869 | G→T | G413C (GGC→TGC) | ybbW → | putative allantoin transporter |
| RA | 548,951 | C→T | R199C (CGT→TGT) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 556,653 | G→A | intergenic (‑100/+8) | ybcI ← / ← ybcJ | PF04307 family inner membrane protein YbcI/putative RNA‑binding protein YbcJ |
| RA | 561,489 | C→T | T598I (ACC→ATC) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 562,281 | G→A | C862Y (TGC→TAC) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 573,977 | C→T | L8F (CTT→TTT) | quuD → | prophage antitermination protein Q homolog QuuD |
| RA | 590,965 | C→T | L738L (CTG→CTA) | nfrB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase |
| RA | 599,895 | T→A | G394G (GGT→GGA) | cusA → | copper/silver export system RND permease |
| RA | 625,184 | G→A | Q100Q (CAG→CAA) | entC → | isochorismate synthase EntC |
| RA | 625,239 | G→A | E119K (GAA→AAA) | entC → | isochorismate synthase EntC |
| RA | 626,003 | G→A | E373E (GAG→GAA) | entC → | isochorismate synthase EntC |
| RA | 632,017 | (G)7→8 | intergenic (+18/‑165) | cstA → / → ybdD | pyruvate transporter CstA/PF04328 family protein YbdD |
| RA | 640,875 | G→A | A375T (GCG→ACG) | ahpF → | alkyl hydroperoxide reductase, AhpF component |
| RA | 642,847 | G→A | G254S (GGT→AGT) | ybdR → | putative Zn(2(+))‑dependent alcohol dehydrogenase YbdR |
| RA | 644,936 | G→A | A23V (GCC→GTC) | rna ← | RNase I |
| RA | 646,765 | G→A | Q249* (CAA→TAA) | citG ← | triphosphoribosyl‑dephospho‑CoA synthase |
| RA | 659,597 | G→A | P207L (CCT→CTT) | lipA ← | lipoyl synthase |
| RA | 663,757 | G→A | R69R (CGC→CGT) | dacA ← | D‑alanyl‑D‑alanine carboxypeptidase DacA |
| RA | 672,861 | G→A | T641T (ACC→ACT) | leuS ← | leucine‑‑tRNA ligase |
| RA | 681,334 | G→A | E375K (GAG→AAG) | djlC → | co‑chaperone DjlC |
| RA | 685,247 | G→A | T3T (ACC→ACT) | gltL ← | glutamate/aspartate ABC transporter ATP binding subunit |
| RA | 686,770 | C→T | noncoding (74/163 nt) | sroC ← | small regulatory RNA SroC |
| RA | 687,474 | G→A | P92S (CCG→TCG) | gltI ← | glutamate/aspartate ABC transporter periplasmic binding protein |
| RA | 690,924 | C→T | Q287Q (CAG→CAA) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 694,826 | G→A | L44L (CTG→TTG) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 702,286 | C→T | V156I (GTC→ATC) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 703,511 | G→A | P34L (CCG→CTG) | nagB ← | glucosamine‑6‑phosphate deaminase |
| RA | 705,141 | G→A | V400I (GTT→ATT) | nagE → | N‑acetylglucosamine‑specific PTS enzyme IIABC component |
| RA | 709,856 | C→T | P23S (CCA→TCA) | chiQ → | lipoprotein ChiQ |
| RA | 711,895 | C→T | A2T (GCC→ACC) | ybfE ← | ribbon‑helix‑helix domain‑containing protein YbfE |
| RA | 720,064 | C→T | G133S (GGC→AGC) | speF ← | inducible ornithine decarboxylase |
| RA | 721,402 | C→T | R111H (CGT→CAT) | kdpE ← | DNA‑binding transcriptional activator KdpE |
| RA | 722,075 | C→T | R780R (CGG→CGA) | kdpD ← | sensor histidine kinase KdpD |
| RA | 722,941 | C→T | G492R (GGG→AGG) | kdpD ← | sensor histidine kinase KdpD |
| RA | 737,835 | G→A | intergenic (+1136/‑257) | ybfQ → / → ybfD | inactive transposase YbfQ/H repeat‑associated putative transposase YbfD |
| RA | 745,696 | G→A | G178S (GGC→AGC) | pxpA → | 5‑oxoprolinase component A |
| RA | 778,688 | G→A | V317M (GTG→ATG) | tolB → | Tol‑Pal system periplasmic protein TolB |
| RA | 779,297 | G→A | K77K (AAG→AAA) | pal → | peptidoglycan‑associated outer membrane lipoprotein Pal |
| RA | 781,285 | G→A | intergenic (+63/‑84) | lysY → / → lysZ | tRNA‑Lys/tRNA‑Lys |
| RA | 799,545 | G→A | G320G (GGG→GGA) | pgl → | 6‑phosphogluconolactonase |
| RA | 805,637 | G→A | G712D (GGT→GAT) | ybhJ → | putative hydratase YbhJ |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 813,709 | G→A | V62I (GTA→ATA) | uvrB → | UvrABC excision nuclease subunit B |
| RA | 826,365 | G→A | A296A (GCC→GCT) | ybhS ← | ABC exporter membrane subunit YbhS |
| RA | 846,231 | T→C | E78G (GAA→GGA) | glnQ ← | L‑glutamine ABC transporter ATP binding subunit |
| RA | 852,953 | G→A | noncoding (112/340 nt) P15P (CCC→CCT) |
rybA ← mntS ← |
small RNA RybA small protein MntS |
| RA | 861,095 | C→T | W504* (TGG→TGA) | ybiW ← | putative pyruvate formate lyase |
| RA | 871,791 | G→A | Q275Q (CAG→CAA) | gsiC → | glutathione ABC transporter membrane subunit GsiC |
| RA | 884,123 | C→T | L151L (CTG→TTG) | mdfA → | multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 921,808 | C→T | Q488* (CAA→TAA) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 941,667 | C→T | L237L (CTG→TTG) | dmsA → | dimethyl sulfoxide reductase subunit A |
| RA | 949,385 | C→T | A62T (GCG→ACG) | ycaN ← | putative DNA‑binding transcriptional regulator YcaN |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,019,715 | G→T | D113E (GAC→GAA) | ompA ← | outer membrane protein A |
| RA | 1,033,251 | G→A | Q371Q (CAG→CAA) | hyaA → | hydrogenase 1 small subunit |
| RA | 1,035,375 | G→A | G104S (GGC→AGC) | hyaC → | hydrogenase 1 cytochrome b subunit |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,115,929 | C→T | Q218Q (CAG→CAA) | lpxL ← | lauroyl acyltransferase |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,173,479 | G→A | Y162Y (TAC→TAT) | mfd ← | transcription‑repair coupling factor |
| RA | 1,179,499 | G→A | D303N (GAT→AAT) | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,180,740 | A→G | A176A (GCT→GCC) | ycfZ ← | putative inner membrane protein YcfZ |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,193,169 | C→T | G202D (GGC→GAC) | mnmA ← | tRNA‑specific 2‑thiouridylase |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,219,718 | G→A | intergenic (+517/+2587) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,244,207 | G→A | T107T (ACC→ACT) | ycgR ← | flagellar brake protein YcgR |
| RA | 1,246,166 | G→A | A404V (GCC→GTC) | treA ← | periplasmic trehalase |
| RA | 1,248,115 | G→A | L334F (CTC→TTC) | dhaM ← | dihydroxyacetone kinase subunit M |
| RA | 1,253,880 | G→A | D691D (GAC→GAT) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,258,716 | G→A | intergenic (‑203/‑75) | pth ← / → ychH | peptidyl‑tRNA hydrolase/stress‑induced protein |
| RA | 1,262,852 | G→A | A9V (GCA→GTA) | ispE ← | 4‑(cytidine 5'‑diphospho)‑2‑C‑methyl‑D‑erythritol kinase |
| RA | 1,263,854 | G→A | L47L (CTG→CTA) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,269,279 | G→A | intergenic (‑4/‑44) | ldrA ← / → rdlA | small toxic polypeptide LdrA/putative antisense regulatory RNA RdlA |
| RA | 1,275,732 | G→A | T33I (ACC→ATC) | narL ← | DNA‑binding transcriptional dual regulator NarL |
| RA | 1,279,166 | G→A | A404T (GCG→ACG) | narK → | nitrate:nitrite antiporter NarK |
| RA | 1,284,154 | G→A | C184Y (TGC→TAC) | narH → | nitrate reductase A subunit beta |
| RA | 1,297,195 | G→A | G309G (GGC→GGT) | adhE ← | fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,305,512 | G→A | A253A (GCG→GCA) | oppD → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppD |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,313,378 | G→A | L96F (CTC→TTC) | yciC ← | putative inner membrane protein |
| RA | 1,314,016 | G→A | intergenic (‑353/‑4) | yciC ← / → ompW | putative inner membrane protein/outer membrane protein W |
| RA | 1,315,078 | G→A | T49T (ACC→ACT) | yciE ← | DUF892 domain‑containing protein YciE |
| RA | 1,315,678 | G→A | L31L (CTC→CTT) | yciF ← | DUF892 domain‑containing protein YciF |
| RA | 1,321,850 | A→G | V366A (GTT→GCT) | trpE ← | anthranilate synthase subunit TrpE |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,339,286 | G→A | intergenic (‑126/‑44) | ribA ← / → pgpB | GTP cyclohydrolase 2/phosphatidylglycerophosphatase B |
| RA | 1,340,566 | G→A | E3E (GAG→GAA) | lapB → | lipopolysaccharide assembly protein B |
| RA | 1,341,553 | G→A | G332G (GGG→GGA) | lapB → | lipopolysaccharide assembly protein B |
| RA | 1,345,043 | G→A | S567F (TCT→TTT) | pdeR ← | cyclic di‑GMP phosphodiesterase PdeR |
| RA | 1,345,822 | G→A | D307D (GAC→GAT) | pdeR ← | cyclic di‑GMP phosphodiesterase PdeR |
| RA | 1,345,878 | C→T | G289S (GGT→AGT) | pdeR ← | cyclic di‑GMP phosphodiesterase PdeR |
| RA | 1,347,874 | G→A | R347C (CGC→TGC) | rnb ← | RNase II |
| RA | 1,349,363 | G→A | L249F (CTT→TTT) | yciW ← | putative peroxidase YciW |
| RA | 1,350,035 | C→T | V25I (GTT→ATT) | yciW ← | putative peroxidase YciW |
| RA | 1,350,046 | G→A | T21M (ACG→ATG) | yciW ← | putative peroxidase YciW |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,359,826 | G→A | G361G (GGC→GGT) | puuA ← | glutamate‑putrescine ligase |
| RA | 1,363,995 | C→T | A418V (GCC→GTC) | puuC → | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,375,364 | G→A | W134* (TGG→TGA) | ycjQ → | D‑guloside 3‑dehydrogenase |
| RA | 1,376,943 | G→A | V38M (GTG→ATG) | ycjS → | D‑glucoside 3‑dehydrogenase |
| RA | 1,378,748 | G→A | G289S (GGC→AGC) | ycjT → | kojibiose phosphorylase |
| RA | 1,378,754 | G→A | A291T (GCG→ACG) | ycjT → | kojibiose phosphorylase |
| RA | 1,379,153 | G→A | V424I (GTT→ATT) | ycjT → | kojibiose phosphorylase |
| RA | 1,384,743 | C→T | H209H (CAC→CAT) | ycjX → | DUF463 domain‑containing protein YcjX |
| RA | 1,388,891 | C→T | intergenic (‑80/‑39) | tpx ← / → ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| RA | 1,390,303 | C→T | R99K (AGA→AAA) | mpaA ← | murein tripeptide amidase A |
| RA | 1,390,834 | C→T | G10D (GGC→GAC) | ymjC ← | putative uncharacterized protein YmjC |
| RA | 1,396,062 | C→T | intergenic (‑140/‑50) | ynaI ← / → insH4 | small conductance mechanosensitive channel YnaI/IS5 family transposase and trans‑activator |
| RA | 1,401,254 | C→T | V174I (GTA→ATA) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| RA | 1,411,942 | C→T | E3K (GAA→AAA) | ttcA ← | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| RA | 1,415,168 | C→T | G740E (GGA→GAA) | recE ← | exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| RA | 1,416,515 | C→T | R291H (CGC→CAC) | recE ← | exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| RA | 1,418,843 | C→T | A58V (GCC→GTC) | sieB → | phage superinfection exclusion protein |
| RA | 1,428,218 | C→T | G170D (GGC→GAC) | insH5 ← | IS5 family transposase and trans‑activator |
| RA | 1,430,016 | C→T | A323V (GCC→GTC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,435,735 | C→T | intergenic (‑116/+25) | uspF ← / ← ompN | universal stress protein F/outer membrane porin N |
| RA | 1,436,556 | C→T | G113E (GGA→GAA) | ompN ← | outer membrane porin N |
| RA | 1,440,002 | C→T | G261G (GGG→GGA) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,444,525 | C→T | P492L (CCC→CTC) | ydbH → | putative phospholipid transport factor YdbH |
| RA | 1,444,631 | C→T | T527T (ACC→ACT) | ydbH → | putative phospholipid transport factor YdbH |
| RA | 1,461,156 | C→T | R88R (CGC→CGT) | paaJ → | beta‑ketoadipyl‑CoA thiolase |
| RA | 1,461,753 | C→T | T287T (ACC→ACT) | paaJ → | beta‑ketoadipyl‑CoA thiolase |
| RA | 1,467,929 | C→T | E300K (GAA→AAA) | insD2 ← | IS2 insertion element protein InsB |
| RA | 1,488,147 | C→T | intergenic (+112/‑85) | ydcF → / → aldA | DUF218 domain‑containing protein YdcF/aldehyde dehydrogenase A |
| RA | 1,489,861 | C→T | intergenic (+190/‑1041) | aldA → / → cybB | aldehyde dehydrogenase A/superoxide oxidase |
| RA | 1,494,852 | (A)5→6 | coding (220/924 nt) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,495,978 | G→A | D231N (GAT→AAT) | ydcJ → | DUF1338 domain‑containing protein YdcJ |
| RA | 1,509,592 | G→A | G29S (GGC→AGC) | hicB → | antitoxin of the HicA‑HicB toxin‑antitoxin system/ DNA‑binding transcriptional repressor HicB |
| RA | 1,509,772 | T→A | S89T (TCA→ACA) | hicB → | antitoxin of the HicA‑HicB toxin‑antitoxin system/ DNA‑binding transcriptional repressor HicB |
| RA | 1,510,883 | C→T | P294L (CCT→CTT) | ydcR → | fused putative DNA‑binding transcriptional regulator/putative aminotransferase YdcR |
| RA | 1,514,317 | G→A | E163K (GAA→AAA) | ydcU → | putative ABC transporter membrane subunit YdcU |
| RA | 1,521,013 | G→A | P685S (CCC→TCC) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,522,601 | G→A | T155T (ACC→ACT) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,523,628 | A→G | T108A (ACC→GCC) | yncE → | PQQ‑like domain‑containing protein YncE |
| RA | 1,531,969 | G→A | E52K (GAA→AAA) | ydcC → | H repeat‑associated putative transposase YdcC |
| RA | 1,540,097 | C→T | A832T (GCA→ACA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,544,540 | C→T | intergenic (‑480/+218) | narU ← / ← yddK | nitrate/nitrite transporter NarU/leucine‑rich repeat domain‑containing protein YddK |
| RA | 1,555,122 | C→T | G183D (GGC→GAC) | maeA ← | malate dehydrogenase (oxaloacetate‑decarboxylating) |
| RA | 1,557,720 | G→A | L107F (CTC→TTC) | ddpF ← | putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF |
| RA | 1,558,635 | C→T | R128Q (CGG→CAG) | ddpD ← | putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpD |
| RA | 1,559,106 | C→T | A269T (GCA→ACA) | ddpC ← | putative D,D‑dipeptide ABC transporter membrane subunit DdpC |
| RA | 1,567,576 | G→A | F416F (TTC→TTT) | digH ← | divisome localized glycosyl hydrolase |
| RA | 1,569,391 | A→G | F367L (TTC→CTC) | gadC ← | L‑glutamate:4‑aminobutyrate antiporter |
| RA | 1,573,933 | G→A | P424S (CCG→TCG) | pqqL ← | periplasmic metalloprotease |
| RA | 1,582,470 | C→T | A19T (GCA→ACA) | ydeN ← | putative sulfatase YdeN |
| RA | 1,593,789 | C→T | intergenic (‑1347/+4828) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,594,311 | C→T | intergenic (‑1869/+4306) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,595,917 | C→T | intergenic (‑3475/+2700) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,597,327 | C→T | intergenic (‑4885/+1290) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,597,608 | C→T | intergenic (‑5166/+1009) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,598,395 | C→T | intergenic (‑5953/+222) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,599,945 | C→T | A89T (GCA→ACA) | lsrK ← | autoinducer‑2 kinase |
| RA | 1,600,113 | C→T | G33S (GGC→AGC) | lsrK ← | autoinducer‑2 kinase |
| RA | 1,603,061 | C→T | L15L (CTG→TTG) | lsrC → | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| RA | 1,603,368 | C→T | A117V (GCC→GTC) | lsrC → | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| RA | 1,617,801 | C→T | G258G (GGC→GGT) | ydeA → | L‑arabinose exporter |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,647,571 | T→C | T22T (ACA→ACG) | ydfX ← | protein YdfX |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,695,623 | G→A | T150I (ACC→ATC) | uidA ← | beta‑glucuronidase |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,737,533 | G→A | L5F (CTT→TTT) | cydH ← | cytochrome bd‑I accessory subunit CydH |
| RA | 1,741,751 | G→A | W113* (TGG→TGA) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,752,136 | G→A | T565T (ACC→ACT) | ydhV ← | putative oxidoreductase YdhV |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,843,127 | G→A | E253K (GAA→AAA) | gdhA → | glutamate dehydrogenase |
| RA | 1,875,677 | C→T | T2I (ACC→ATC) | nimT → | 2‑nitroimidazole exporter |
| RA | 1,876,063 | C→T | P131S (CCT→TCT) | nimT → | 2‑nitroimidazole exporter |
| RA | 1,889,453 | C→T | G98G (GGG→GGA) | fadD ← | long‑chain‑fatty‑acid‑‑CoA ligase |
| RA | 1,893,564 | C→T | F66F (TTC→TTT) | yoaB → | RutC family protein YoaB |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,895,353 | C→T | D183D (GAC→GAT) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 2,004,071 | C→T | A67V (GCC→GTC) | fliD → | flagellar filament capping protein |
| RA | 2,029,236 | T→C | N44S (AAT→AGT) | yedI ← | DUF808 domain‑containing inner membrane protein YedI |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,050,238 | T→C | S1767S (AGT→AGC) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,056,599 | T→C | intergenic (+84/‑259) | amn → / → yeeN | AMP nucleosidase/putative transcriptional regulator YeeN |
| RA | 2,100,672 | T→C | E199E (GAA→GAG) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,269,856 | C→T | intergenic (+289/‑123) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| RA | 2,316,202 | C→T | A9V (GCC→GTC) | rcsB → | DNA‑binding transcriptional activator RcsB |
| JC JC | 2,382,523 | IS1 (–) +9 bp | [rbn] | [rbn] | |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,448,152 | C→T | A97T (GCG→ACG) | prmB ← | ribosomal protein L3 N(5)‑glutamine methyltransferase |
| RA | 2,464,335 | C→T | A225T (GCT→ACT) | mlaA ← | intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA |
| RA | 2,472,282 | C→T | G36R (GGA→AGA) | yfdM ← | putative methyltransferase YfdM |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,491,112 | C→T | R280Q (CGA→CAA) | oxc ← | oxalyl‑CoA decarboxylase |
| RA | 2,497,429 | C→T | L289L (CTG→CTA) | alaC ← | glutamate‑‑pyruvate aminotransferase AlaC |
| RA | 2,509,277 | T→C | E50E (GAA→GAG) | glk ← | glucokinase |
| RA | 2,547,929 | C→T | G419G (GGC→GGT) | murP → | N‑acetylmuramic acid‑specific PTS enzyme IICB component/anhydro‑N‑acetylmuramic acid transporter |
| RA | 2,556,466 | C→T | D278N (GAT→AAT) | eutC ← | ethanolamine ammonia‑lyase subunit beta |
| RA | 2,561,146 | C→T | intergenic (+248/‑222) | yffL → / → yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| RA | 2,574,537 | C→T | S156N (AGC→AAC) | eutQ ← | putative ethanolamine utilization acetate kinase EutQ |
| RA | 2,631,667 | G→A | A290V (GCA→GTA) | guaA ← | GMP synthetase |
| RA | 2,675,335 | G→A | L143F (CTC→TTC) | yphC ← | putative zinc‑binding dehydrogenase YphC |
| RA | 2,764,953 | C→T | W67* (TGG→TGA) | abpA ← | anti‑bacteriophage protein |
| RA | 2,767,045 | G→A | G21D (GGC→GAC) | rnlB → | antitoxin RnlB |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 3,055,907 | G→A | R99H (CGC→CAC) | zapA → | cell division protein ZapA |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,143,279 | G→A | L296F (CTC→TTC) | hybB ← | hydrogenase 2 membrane subunit |
| RA | 3,195,117 | G→A | noncoding (124/144 nt) | sibE ← | small RNA SibE |
| RA | 3,195,432 | G→A | A441V (GCC→GTC) | hldE ← | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
| RA | 3,202,387 | C→T | A166V (GCG→GTG) | cca → | fused CCA tRNA nucleotidyltransferase/phosphohydrolase |
| RA | 3,205,054 | G→A | D121N (GAT→AAT) | plsY → | putative glycerol‑3‑phosphate acyltransferase |
| RA | 3,259,756 | G→A | L119L (CTG→TTG) | tdcF ← | putative enamine/imine deaminase |
| RA | 3,262,529 | G→A | P378S (CCG→TCG) | tdcD ← | propionate kinase |
| RA | 3,265,043 | G→A | A329V (GCT→GTT) | tdcB ← | catabolic threonine dehydratase |
| RA | 3,267,794 | G→A | intergenic (+196/‑60) | tdcR → / → yhaB | DNA‑binding transcriptional activator TdcR/protein YhaB |
| RA | 3,289,167 | G→A | V118V (GTG→GTA) | yraJ → | putative fimbrial usher protein YraJ |
| RA | 3,291,761 | G→A | A141T (GCT→ACT) | yraK → | putative fimbrial adhesin YraK |
| RA | 3,311,967 | G→A | R271C (CGT→TGT) | truB ← | tRNA pseudouridine(55) synthase |
| RA | 3,314,130 | G→A | L629F (CTC→TTC) L629F (CTC→TTC) L629F (CTC→TTC) |
infB ← infB ← infB ← |
translation initiation factor IF‑2beta' translation initiation factor IF‑2beta' translation initiation factor IF‑2beta' |
| RA | 3,324,879 | G→A | D11D (GAC→GAT) | folP ← | dihydropteroate synthase |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,337,832 | G→A | T20T (ACC→ACT) | mlaC ← | intermembrane phospholipid transport system ‑ periplasmic binding protein |
| RA | 3,339,982 | G→A | S28S (TCC→TCT) | mlaF ← | intermembrane phospholipid transport system, ATP binding subunit MlaF |
| RA | 3,343,250 | G→A | V139M (GTG→ATG) | lptC → | lipopolysaccharide transport system protein LptC |
| RA | 3,346,302 | G→A | E44K (GAG→AAG) | hpf → | ribosome hibernation‑promoting factor |
| RA | 3,347,092 | G→A | intergenic (+23/‑23) | ptsN → / → rapZ | phosphotransferase system enzyme IIA(Ntr)/RNase adaptor protein RapZ |
| RA | 3,347,370 | G→A | D86N (GAT→AAT) | rapZ → | RNase adaptor protein RapZ |
| RA | 3,355,138 | G→A | E138E (GAG→GAA) | gltB → | glutamate synthase subunit GltB |
| RA | 3,359,010 | G→A | G1429D (GGT→GAT) | gltB → | glutamate synthase subunit GltB |
| RA | 3,359,916 | G→A | G240E (GGG→GAG) | gltD → | glutamate synthase subunit GltD |
| RA | 3,359,937 | G→A | G247D (GGC→GAC) | gltD → | glutamate synthase subunit GltD |
| RA | 3,377,162 | G→A | P87S (CCA→TCA) | sspA ← | stringent starvation protein A |
| RA | 3,379,594 | G→A | A135V (GCC→GTC) | zapE ← | cell division protein ZapE |
| RA | 3,381,442 | G→A | A234T (GCG→ACG) | degQ → | periplasmic serine endoprotease |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,390,213 | G→A | A232T (GCG→ACG) | aaeR → | DNA‑binding transcriptional activator AaeR |
| RA | 3,399,260 | G→A | S240F (TCC→TTC) | mreC ← | cell shape determining protein MreC |
| RA | 3,420,842 | G→A | A237T (GCA→ACA) | yhdX → | putative ABC transporter membrane subunit YhdX |
| RA | 3,424,524 | G→A | noncoding (2260/2904 nt) | rrlD ← | 23S ribosomal RNA |
| RA | 3,428,727 | G→A | noncoding (36/1542 nt) | rrsD ← | 16S ribosomal RNA |
| RA | 3,428,825 | G→A | intergenic (‑63/‑411) | rrsD ← / → yrdA | 16S ribosomal RNA/hexapeptide repeat‑containing protein YrdA |
| RA | 3,430,588 | G→A | A84V (GCT→GTT) | aroE ← | shikimate dehydrogenase |
| RA | 3,431,506 | G→A | P153S (CCG→TCG) | yrdD ← | putative DNA topoisomerase |
| RA | 3,436,419 | G→A | E405K (GAG→AAG) | rsmB → | 16S rRNA m(5)C967 methyltransferase |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,439,003 | C→T | S43N (AGC→AAC) | zntR ← | DNA‑binding transcriptional activator ZntR |
| RA | 3,450,966 | G→A | R133R (CGC→CGT) | rplB ← | 50S ribosomal subunit protein L2 |
| RA | 3,466,533 | G→A | L65L (CTG→TTG) | bfr ← | bacterioferritin |
| RA | 3,476,485 | G→A | intergenic (‑45/+122) | yheO ← / ← fkpA | DNA‑binding transcriptional regulator YheO/peptidyl‑prolyl cis‑trans isomerase FkpA |
| RA | 3,477,781 | C→T | L48L (CTG→TTG) | slyX → | protein SlyX |
| RA | 3,479,373 | C→T | G412D (GGT→GAT) | kefB ← | K(+) : H(+) antiporter KefB |
| RA | 3,480,842 | C→T | R107H (CGT→CAT) | kefG ← | glutathione‑regulated potassium‑efflux system ancillary protein KefG |
| RA | 3,487,784 | C→T | L332L (CTG→TTG) | yhfK → | putative transporter YhfK |
| RA | 3,491,210 | C→T | G85D (GGT→GAT) | fic ← | putative adenosine monophosphate‑‑protein transferase Fic |
| RA | 3,500,982 | C→T | T358I (ACC→ATC) | frlA → | fructoselysine/psicoselysine transporter |
| RA | 3,505,751 | C→T | G90G (GGG→GGA) | yhfS ← | putative aminotransferase YhfS |
| RA | 3,509,233 | C→T | R194H (CGC→CAC) | yhfW ← | putative mutase YhfW |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,667,023 | C→T | Q186Q (CAG→CAA) | gadA ← | glutamate decarboxylase A |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,705,875 | G→A | intergenic (‑85/+223) | dppB ← / ← dppA | dipeptide ABC transporter membrane subunit DppB/dipeptide ABC transporter periplasmic binding protein |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| MC JC | 3,708,467 | Δ168 bp | [proK] | [proK] | |
| RA | 3,720,801 | C→T | T41I (ACA→ATA) | insJ → | insertion element IS150 protein InsA |
| RA | 3,725,152 | G→A | A56V (GCT→GTT) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,746,493 | G→A | G134S (GGT→AGT) | yiaO → | 2,3‑diketo‑L‑gulonate:Na(+) symporter ‑ periplasmic binding protein |
| RA | 3,747,484 | A→T | H134L (CAT→CTT) | lyxK → | L‑xylulose kinase |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,780,988 | G→A | A388T (GCT→ACT) | lldD → | L‑lactate dehydrogenase |
| RA | 3,785,167 | G→A | intergenic (‑152/‑93) | yibN ← / → gpmM | putative sulfurtransferase YibN/2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,787,826 | G→A | G330D (GGT→GAT) | envC → | murein hydrolase activator EnvC |
| RA | 3,792,096 | G→A | R152R (CGC→CGT) | kbl ← | 2‑amino‑3‑ketobutyrate CoA ligase |
| RA | 3,806,801 | C→T | K89K (AAG→AAA) | waaG ← | lipopolysaccharide glucosyltransferase I |
| RA | 3,811,123 | G→A | S10S (AGC→AGT) | mutM ← | DNA‑formamidopyrimidine glycosylase |
| RA | 3,815,416 | C→T | G118E (GGA→GAA) | pyrE ← | orotate phosphoribosyltransferase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,817,555 | C→T | intergenic (+16/‑205) | yicC → / → dinD | putative RNase adaptor protein YicC/DNA damage‑inducible protein D |
| RA | 3,818,527 | C→T | T256T (ACC→ACT) | dinD → | DNA damage‑inducible protein D |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,829,611 | G→A | A223T (GCC→ACC) | xanP → | xanthine:H(+) symporter XanP |
| RA | 3,833,353 | G→A | C395C (TGC→TGT) | yicI ← | alpha‑D‑xyloside xylohydrolase |
| RA | 3,839,315 | G→A | P227S (CCG→TCG) | nlpA ← | lipoprotein‑28 |
| RA | 3,839,410 | G→A | P195L (CCC→CTC) | nlpA ← | lipoprotein‑28 |
| RA | 3,843,428 | C→T | G121D (GGC→GAC) | adeQ ← | adenine transporter |
| RA | 3,844,489 | G→A | D176N (GAC→AAC) | adeD → | adenine deaminase |
| RA | 3,853,196 | G→A | noncoding (62/140 nt) | istR ← | small RNA IstR‑2 |
| RA | 3,867,864 | G→A | G46D (GGC→GAC) | yidQ → | DUF1375 domain‑containing putative lipoprotein YidQ |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,870,078 | G→A | M234I (ATG→ATA) | cbrA → | colicin M resistance protein |
| RA | 3,872,137 | G→A | L288F (CTC→TTC) | dgoD ← | D‑galactonate dehydratase |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,889,459 | G→A | E244K (GAA→AAA) | tnaA → | tryptophanase |
| RA | 3,890,923 | G→A | V230M (GTG→ATG) | tnaB → | tryptophan:H(+) symporter TnaB |
| RA | 3,894,347 | G→A | G156D (GGT→GAT) | yieE → | putative phosphopantetheinyl transferase |
| RA | 3,903,658 | G→A | A15V (GCT→GTT) | bglB ← | 6‑phospho‑beta‑glucosidase B |
| RA | 3,910,444 | C→T | intergenic (‑46/+41) | pstC ← / ← pstS | phosphate ABC transporter membrane subunit PstC/phosphate ABC transporter periplasmic binding protein |
| RA | 3,911,379 | C→T | Q49Q (CAG→CAA) | pstS ← | phosphate ABC transporter periplasmic binding protein |
| RA | 3,914,907 | G→A | D98D (GAC→GAT) | glmU ← | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase |
| RA | 3,916,100 | G→A | R426C (CGT→TGT) | atpD ← | ATP synthase F1 complex subunit beta |
| RA | 3,917,093 | G→A | P95S (CCG→TCG) | atpD ← | ATP synthase F1 complex subunit beta |
| RA | 3,920,136 | G→A | P90S (CCG→TCG) | atpH ← | ATP synthase F1 complex subunit delta |
| RA | 3,954,459 | C→T | R328C (CGT→TGT) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 3,961,662 | G→T | G329V (GGC→GTC) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 3,965,174 | G→A | H153Y (CAC→TAC) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 3,968,683 | G→A | M256I (ATG→ATA) | rfe → | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| RA | 3,969,748 | T→C | S240P (TCG→CCG) | wzzE → | enterobacterial common antigen polysaccharide co‑polymerase |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,997,261 | G→A | V27M (GTG→ATG) | yigB → | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
| RA | 4,005,738 | G→A | intergenic (+7/‑126) | pldA → / → recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase RecQ |
| RA | 4,009,250 | G→A | W27* (TGG→TGA) | pldB → | lysophospholipase L2 |
| RA | 4,009,552 | G→A | G128D (GGT→GAT) | pldB → | lysophospholipase L2 |
| RA | 4,015,364 | T→C | K269R (AAG→AGG) | ysgA ← | putative dienelactone hydrolase |
| RA | 4,017,606 | G→A | A92T (GCC→ACC) | rmuC → | putative recombination limiting protein RmuC |
| RA | 4,020,530 | G→A | G102D (GGC→GAC) | ubiB → | ubiquinone biosynthesis protein UbiB |
| RA | 4,022,421 | G→A | K68K (AAG→AAA) | tatB → | twin arginine protein translocation system ‑ TatB protein |
| RA | 4,025,213 | G→A | G76S (GGC→AGC) | ubiD → | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| RA | 4,027,752 | G→A | L341L (CTG→TTG) | fadA ← | 3‑ketoacyl‑CoA thiolase |
| RA | 4,031,591 | G→A | S144N (AGC→AAC) | pepQ → | Xaa‑Pro dipeptidase |
| RA | 4,033,621 | G→A | Q159Q (CAG→CAA) | trkH → | K(+) transporter TrkH |
| RA | 4,037,278 | G→A | noncoding (19/76 nt) | alaT → | tRNA‑Ala |
| RA | 4,064,842 | C→T | V309M (GTG→ATG) | yihO ← | putative sulfoquinovose transporter |
| RA | 4,069,091 | C→T | Q62Q (CAG→CAA) | yihQ ← | sulfoquinovosidase |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,090,609 | A→G | I106T (ATC→ACC) | frvX ← | peptidase M42 family protein FrvX |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,111,379 | C→T | P43P (CCG→CCA) | tpiA ← | triose‑phosphate isomerase |
| RA | 4,112,203 | C→T | G4G (GGG→GGA) | yiiQ ← | DUF1454 domain‑containing protein YiiQ |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,193,850 | G→A | L119L (CTG→TTG) | thiE ← | thiamine phosphate synthase |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,238,016 | G→A | R128Q (CGG→CAG) | yjbH → | putative lipoprotein YjbH |
| RA | 4,256,705 | C→T | R23R (CGC→CGT) | dgkA → | diacylglycerol kinase |
| RA | 4,256,736 | C→T | Q34* (CAG→TAG) | dgkA → | diacylglycerol kinase |
| RA | 4,257,546 | C→T | V144V (GTC→GTT) | lexA → | DNA‑binding transcriptional repressor LexA |
| RA | 4,269,737 | C→T | G108G (GGC→GGT) | aphA → | acid phosphatase/phosphotransferase |
| RA | 4,269,904 | C→T | P164L (CCG→CTG) | aphA → | acid phosphatase/phosphotransferase |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,385,260 | C→T | V474V (GTC→GTT) | yjeM → | putative transporter YjeM |
| RA | 4,386,666 | C→T | W902* (TGG→TAG) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,389,369 | A→G | M1A (GTG→GCG) † | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,442,405 | C→T | C8C (TGC→TGT) | tamA → | translocation and assembly module subunit TamA |
| RA | 4,453,213 | G→A | A215T (GCA→ACA) | ytfT → | galactofuranose ABC transporter putative membrane subunit YtfT |
| RA | 4,456,339 | C→T | N185N (AAC→AAT) | mpl → | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| RA | 4,457,569 | C→T | Q99Q (CAG→CAA) | yjgA ← | putative ribosome biogenesis factor YjgA |
| RA | 4,457,803 | G→A | D21D (GAC→GAT) | yjgA ← | putative ribosome biogenesis factor YjgA |
| RA | 4,457,874 | C→T | intergenic (‑9/‑85) | yjgA ← / → tldE | putative ribosome biogenesis factor YjgA/metalloprotease subunit TldE |
| RA | 4,460,754 | C→T | G636D (GGC→GAC) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,461,891 | C→T | G257D (GGC→GAC) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,462,277 | C→T | Q128Q (CAG→CAA) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,462,776 | C→T | intergenic (‑116/+278) | nrdD ← / ← treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑phosphate hydrolase |
| RA | 4,462,941 | C→T | intergenic (‑281/+113) | nrdD ← / ← treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑phosphate hydrolase |
| RA | 4,463,138 | C→T | V524V (GTG→GTA) | treC ← | trehalose‑6‑phosphate hydrolase |
| RA | 4,471,404 | C→T | G15D (GGC→GAC) | pyrI ← | aspartate carbamoyltransferase, PyrI subunit |
| RA | 4,486,407 | C→T | L64L (CTG→TTG) | lptF → | lipopolysaccharide transport system protein LptF |
| RA | 4,494,432 | C→T | intergenic (‑26/‑191) | idnD ← / → idnK | L‑idonate 5‑dehydrogenase/D‑gluconate kinase, thermosensitive |
| RA | 4,495,621 | C→T | A197T (GCC→ACC) | ahr ← | NADPH‑dependent aldehyde reductase Ahr |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,512,344 | C→T | G24E (GGA→GAA) | fecD ← | ferric citrate ABC transporter membrane subunit FecD |
| RA | 4,513,529 | C→T | K260K (AAG→AAA) | fecB ← | ferric citrate ABC transporter periplasmic binding protein |
| RA | 4,517,591 | C→T | D43N (GAT→AAT) | fecR ← | ferric citrate regulator FecR |
| RA | 4,518,930 | T→C | intergenic (+128/+408) | insA7 → / ← yjhU | IS1 family repressor protein InsA/putative DNA‑binding transcriptional regulator YjhU |
| RA | 4,521,584 | C→T | G146D (GGT→GAT) | yjhF ← | putative transporter YjhF |
| RA | 4,523,866 | C→T | D77N (GAC→AAC) | yjhG ← | D‑xylonate dehydratase |
| RA | 4,526,856 | C→T | Q11Q (CAG→CAA) | sgcR ← | putative DNA‑binding transcriptional regulator SgcR |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,549,907 | C→T | intergenic (+197/+46) | fimH → / ← gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter |
| RA | 4,618,086 | G→A | S255N (AGC→AAC) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,618,623 | G→A | G132D (GGC→GAC) | deoA → | thymidine phosphorylase |
| RA | 4,631,521 | G→A | M263I (ATG→ATA) | slt → | soluble lytic murein transglycosylase |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| RA | 4,638,495 | G→A | G106G (GGG→GGA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 730332–730565 | 731641–731560 | 996–1310 | 32 [29] | [29] 36 | rhsC | rhs element protein RhsC |
| * | * | ÷ | NC_000913 | 1196320 | 1211460 | 15141 | 32 [31] | [31] 37 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978504 | 10–776 | 100 [0] | [0] 133 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423871–3424232 | 3424455–3424239 | 8–585 | 32 [31] | [31] 32 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4037971–4038685 | 4039209–4038723 | 39–1239 | 32 [31] | [31] 32 | rrlA | 23S ribosomal RNA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 780629 | 96 (1.010) | 23 (0.330) | 16/438 | 2.9 | 26.9% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | 780919 = | 54 (0.770) | intergenic (+1/‑149) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 99 (1.040) | 59/590 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 133 (1.400) | 81/590 | 0.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||