#=GENOME_DIFF	1.0
#=CREATED	13:15:50 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8329_S6_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8329_S6_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8329_S6_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8329_S6_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8329_S6_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	466389252
#=CONVERTED-READS	1576773
#=INPUT-BASES	466481345
#=INPUT-READS	1577088
#=MAPPED-BASES	438807604
#=MAPPED-READS	1484221
SNP	1	469	NC_000913	6368	A
SNP	2	470	NC_000913	22796	A
SNP	3	471	NC_000913	25374	A
SNP	4	472	NC_000913	26931	A
SNP	5	473	NC_000913	30326	A
SNP	6	474	NC_000913	34521	A
SNP	7	475	NC_000913	58044	A
SNP	8	476	NC_000913	59295	A
SNP	9	477	NC_000913	61932	A
SNP	10	478	NC_000913	75749	A
SNP	11	479	NC_000913	80413	C
SNP	12	480	NC_000913	87729	A
SNP	13	481	NC_000913	98436	T
SNP	14	482	NC_000913	112666	C
SNP	15	483	NC_000913	115017	A
SNP	16	484	NC_000913	131517	A
SNP	17	485	NC_000913	134947	A
SNP	18	487	NC_000913	144163	T
SNP	19	488	NC_000913	145144	T
SNP	20	489	NC_000913	157279	T
SNP	21	490	NC_000913	159061	T
SNP	22	491	NC_000913	159971	T
SNP	23	492	NC_000913	162659	T
SNP	24	493	NC_000913	171222	T
SNP	25	494	NC_000913	173721	T
SNP	26	495	NC_000913	181564	T
SNP	27	496	NC_000913	202488	A
SNP	28	497	NC_000913	209650	G
SNP	29	498	NC_000913	211411	T
SNP	30	499	NC_000913	211536	T
SNP	31	500	NC_000913	213688	T
SNP	32	501	NC_000913	214607	T
SNP	33	502	NC_000913	215947	T
SNP	34	503	NC_000913	218136	T
SNP	35	504	NC_000913	222784	T
SNP	36	505	NC_000913	232646	T
SNP	37	506	NC_000913	237310	G
SNP	38	507	NC_000913	239802	T
SNP	39	508	NC_000913	240993	T
SNP	40	509	NC_000913	246747	T
SNP	41	510	NC_000913	250724	T
SNP	42	511	NC_000913	251069	T
DEL	43	980,989	NC_000913	257908	776
SNP	44	512	NC_000913	258986	T
SNP	45	513	NC_000913	279397	T
SNP	46	514	NC_000913	284535	G
SNP	47	515	NC_000913	286737	A
SNP	48	516	NC_000913	286741	A
SNP	49	517	NC_000913	303936	T
SNP	50	518	NC_000913	313543	A
SNP	51	519	NC_000913	339935	T
SNP	52	520	NC_000913	339941	T
SNP	53	521	NC_000913	339958	A
SNP	54	525	NC_000913	359642	A
SNP	55	526	NC_000913	377292	T
SNP	56	527	NC_000913	379592	A
SNP	57	528	NC_000913	393962	T
SNP	58	529	NC_000913	402101	A
SNP	59	530	NC_000913	424981	T
SNP	60	531	NC_000913	466884	A
SNP	61	532	NC_000913	469175	A
SNP	62	533	NC_000913	472100	T
SUB	63	534,535	NC_000913	480295	2	AA
SNP	64	536	NC_000913	502527	T
SNP	65	537	NC_000913	538869	T
SNP	66	538	NC_000913	548951	T
SNP	67	539	NC_000913	556653	A
SNP	68	540	NC_000913	561489	T
SNP	69	541	NC_000913	562281	A
SNP	70	542	NC_000913	573977	T
SNP	71	544	NC_000913	590965	T
SNP	72	545	NC_000913	599895	A
SNP	73	546	NC_000913	625184	A
SNP	74	547	NC_000913	625239	A
SNP	75	548	NC_000913	626003	A
INS	76	549	NC_000913	632017	G	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=G
SNP	77	550	NC_000913	640875	A
SNP	78	551	NC_000913	642847	A
SNP	79	552	NC_000913	644936	A
SNP	80	553	NC_000913	646765	A
SNP	81	554	NC_000913	659597	A
SNP	82	555	NC_000913	663757	A
SNP	83	556	NC_000913	672861	A
SNP	84	557	NC_000913	681334	A
SNP	85	558	NC_000913	685247	A
SNP	86	559	NC_000913	686770	T
SNP	87	560	NC_000913	687474	A
SNP	88	561	NC_000913	690924	T
SNP	89	562	NC_000913	690948	A
SNP	90	563	NC_000913	694826	A
SNP	91	564	NC_000913	700038	A
SNP	92	565	NC_000913	702286	T
SNP	93	566	NC_000913	703511	A
SNP	94	567	NC_000913	705141	A
SNP	95	568	NC_000913	709856	T
SNP	96	570	NC_000913	711895	T
SNP	97	571	NC_000913	720064	T
SNP	98	572	NC_000913	721402	T
SNP	99	573	NC_000913	722075	T
SNP	100	574	NC_000913	722941	T
SNP	101	576	NC_000913	737835	A
SNP	102	577	NC_000913	745696	A
SNP	103	578	NC_000913	778688	A
SNP	104	579	NC_000913	779297	A
SNP	105	580	NC_000913	781285	A
SNP	106	581	NC_000913	799545	A
SNP	107	582	NC_000913	805637	A
SUB	108	583,584	NC_000913	809217	2	AG
SNP	109	585	NC_000913	813709	A
SNP	110	586	NC_000913	826365	A
SNP	111	588	NC_000913	846231	C
SNP	112	591	NC_000913	852953	A
SNP	113	592	NC_000913	861095	T
SNP	114	594	NC_000913	871791	A
SNP	115	595	NC_000913	884123	T
SNP	116	596	NC_000913	921808	T
SNP	117	597	NC_000913	941667	T
SNP	118	598	NC_000913	949385	T
SNP	119	599	NC_000913	968837	A
SNP	120	600	NC_000913	1019715	T
SNP	121	601	NC_000913	1033251	A
SNP	122	602	NC_000913	1035375	A
SNP	123	603	NC_000913	1040126	T
SNP	124	604	NC_000913	1061935	A
SUB	125	607,608	NC_000913	1111727	2	TT
SNP	126	609	NC_000913	1115929	T
SNP	127	610	NC_000913	1169836	G
SNP	128	611	NC_000913	1173479	A
SNP	129	612	NC_000913	1179499	A
SNP	130	613	NC_000913	1180740	G
SNP	131	614	NC_000913	1189980	G
SNP	132	615	NC_000913	1193169	T
SNP	133	616	NC_000913	1196220	T
SNP	134	617	NC_000913	1196232	T
SNP	135	618	NC_000913	1196245	C
SNP	136	619	NC_000913	1196247	G
SNP	137	620	NC_000913	1196277	T
SNP	138	621	NC_000913	1196280	C
SNP	139	622	NC_000913	1196283	G
SNP	140	623	NC_000913	1196292	T
SNP	141	624	NC_000913	1196304	A
SNP	142	625	NC_000913	1196316	A
SNP	143	628	NC_000913	1219718	A
SNP	144	629	NC_000913	1244207	A
SNP	145	630	NC_000913	1246166	A
SNP	146	631	NC_000913	1248115	A
SNP	147	632	NC_000913	1253880	A
SNP	148	633	NC_000913	1258716	A
SNP	149	634	NC_000913	1262852	A
SNP	150	635	NC_000913	1263854	A
SNP	151	636	NC_000913	1269279	A
SNP	152	638	NC_000913	1275732	A
SNP	153	639	NC_000913	1279166	A
SNP	154	640	NC_000913	1284154	A
SNP	155	641	NC_000913	1297195	A
DEL	156	983,1005	NC_000913	1299499	1199
SNP	157	642	NC_000913	1301992	T
SNP	158	643	NC_000913	1305512	A
SNP	159	644	NC_000913	1306736	G
SNP	160	645	NC_000913	1310770	G
SNP	161	646	NC_000913	1313378	A
SNP	162	647	NC_000913	1314016	A
SNP	163	648	NC_000913	1315078	A
SNP	164	649	NC_000913	1315678	A
SNP	165	650	NC_000913	1321850	G
SNP	166	652	NC_000913	1337394	G
SNP	167	653	NC_000913	1339286	A
SNP	168	654	NC_000913	1340566	A
SNP	169	655	NC_000913	1341553	A
SNP	170	656	NC_000913	1345043	A
SNP	171	657	NC_000913	1345822	A
SNP	172	658	NC_000913	1345878	T
SNP	173	659	NC_000913	1347874	A
SNP	174	660	NC_000913	1349363	A
SNP	175	661	NC_000913	1350035	T
SNP	176	662	NC_000913	1350046	A
SNP	177	663	NC_000913	1357202	T
SNP	178	664	NC_000913	1358859	C
SNP	179	665	NC_000913	1359826	A
SNP	180	666	NC_000913	1363995	T
SNP	181	667	NC_000913	1375364	A
SNP	182	668	NC_000913	1376943	A
SNP	183	669	NC_000913	1378748	A
SNP	184	670	NC_000913	1378754	A
SNP	185	671	NC_000913	1379153	A
SNP	186	672	NC_000913	1384743	T
SNP	187	673	NC_000913	1388891	T
SNP	188	674	NC_000913	1390303	T
SNP	189	675	NC_000913	1390834	T
SNP	190	676	NC_000913	1396062	T
SNP	191	677	NC_000913	1401254	T
SNP	192	678	NC_000913	1411942	T
SNP	193	679	NC_000913	1415168	T
SNP	194	680	NC_000913	1416515	T
SNP	195	681	NC_000913	1418843	T
SNP	196	682	NC_000913	1428218	T
SNP	197	683	NC_000913	1430016	T
SNP	198	684	NC_000913	1435735	T
SNP	199	685	NC_000913	1436556	T
SNP	200	686	NC_000913	1440002	T
SNP	201	687	NC_000913	1444525	T
SNP	202	688	NC_000913	1444631	T
SNP	203	689	NC_000913	1461156	T
SNP	204	690	NC_000913	1461753	T
SNP	205	692	NC_000913	1467929	T
SNP	206	693	NC_000913	1488147	T
SNP	207	694	NC_000913	1489861	T
INS	208	695	NC_000913	1494852	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SNP	209	696	NC_000913	1495978	A
SNP	210	699	NC_000913	1509592	A
SNP	211	700	NC_000913	1509772	A
SNP	212	701	NC_000913	1510883	T
SNP	213	702	NC_000913	1514317	A
SNP	214	703	NC_000913	1521013	A
SNP	215	704	NC_000913	1522601	A
SNP	216	705	NC_000913	1523628	G
SNP	217	706	NC_000913	1531969	A
SNP	218	707	NC_000913	1540097	T
SNP	219	708	NC_000913	1544540	T
SNP	220	709	NC_000913	1555122	T
SNP	221	710	NC_000913	1557720	A
SNP	222	711	NC_000913	1558635	T
SNP	223	712	NC_000913	1559106	T
SNP	224	713	NC_000913	1567576	A
SNP	225	714	NC_000913	1569391	G
SNP	226	715	NC_000913	1573933	A
SNP	227	716	NC_000913	1582470	T
SNP	228	717	NC_000913	1593789	T
SNP	229	718	NC_000913	1594311	T
SNP	230	719	NC_000913	1595917	T
SNP	231	720	NC_000913	1597327	T
SNP	232	721	NC_000913	1597608	T
SNP	233	722	NC_000913	1598395	T
SNP	234	723	NC_000913	1599945	T
SNP	235	724	NC_000913	1600113	T
SNP	236	725	NC_000913	1603061	T
SNP	237	726	NC_000913	1603368	T
SNP	238	727	NC_000913	1617801	T
SNP	239	728	NC_000913	1643679	T
SNP	240	729	NC_000913	1647571	C
SNP	241	730	NC_000913	1652331	C
SNP	242	731	NC_000913	1695623	A
SNP	243	732	NC_000913	1721136	T
SNP	244	733	NC_000913	1737533	A
SNP	245	734	NC_000913	1741751	A
SNP	246	735	NC_000913	1752136	A
SNP	247	737	NC_000913	1776715	T
SNP	248	740	NC_000913	1843127	A
SNP	249	741	NC_000913	1875677	T
SNP	250	742	NC_000913	1876063	T
SNP	251	743	NC_000913	1889453	T
SNP	252	744	NC_000913	1893564	T
SNP	253	745	NC_000913	1894839	C
SNP	254	746	NC_000913	1895353	T
SNP	255	748	NC_000913	2004071	T
SNP	256	749	NC_000913	2029236	C
SNP	257	750	NC_000913	2040433	A
SNP	258	751	NC_000913	2050238	C
SNP	259	752	NC_000913	2056599	C
SNP	260	754	NC_000913	2100672	C
DEL	261	755,756	NC_000913	2173363	2
SNP	262	757	NC_000913	2188087	C
SNP	263	758	NC_000913	2269856	T
SNP	264	760	NC_000913	2316202	T
MOB	265	1008,1009	NC_000913	2382523	IS1	-1	9
SNP	266	761	NC_000913	2384808	T
SNP	267	762	NC_000913	2410419	A
SNP	268	763	NC_000913	2448152	T
SNP	269	764	NC_000913	2464335	T
SNP	270	765	NC_000913	2472282	T
SNP	271	766	NC_000913	2484827	T
SNP	272	767	NC_000913	2491112	T
SNP	273	768	NC_000913	2497429	T
SNP	274	769	NC_000913	2509277	C
SNP	275	770	NC_000913	2547929	T
SNP	276	771	NC_000913	2556466	T
SNP	277	772	NC_000913	2561146	T
SNP	278	773	NC_000913	2574537	T
SNP	279	774	NC_000913	2631667	A
SNP	280	775	NC_000913	2675335	A
SNP	281	776	NC_000913	2764953	T
SNP	282	777	NC_000913	2767045	A
MOB	283	1014,1015	NC_000913	2913392	IS2	-1	5
SNP	284	785	NC_000913	3055907	A
SUB	285	786,787	NC_000913	3088010	2	TT
SNP	286	788	NC_000913	3143279	A
SNP	287	790	NC_000913	3195117	A
SNP	288	791	NC_000913	3195432	A
SNP	289	792	NC_000913	3202387	T
SNP	290	793	NC_000913	3205054	A
SNP	291	794	NC_000913	3259756	A
SNP	292	795	NC_000913	3262529	A
SNP	293	796	NC_000913	3265043	A
SNP	294	797	NC_000913	3267794	A
SNP	295	799	NC_000913	3289167	A
SNP	296	800	NC_000913	3291761	A
SNP	297	801	NC_000913	3311967	A
SNP	298	802	NC_000913	3314130	A
SNP	299	803	NC_000913	3324879	A
SUB	300	804,805	NC_000913	3336411	2	AT
SNP	301	806	NC_000913	3337832	A
SNP	302	807	NC_000913	3339982	A
SNP	303	808	NC_000913	3343250	A
SNP	304	809	NC_000913	3346302	A
SNP	305	810	NC_000913	3347092	A
SNP	306	811	NC_000913	3347370	A
SNP	307	812	NC_000913	3355138	A
SNP	308	813	NC_000913	3359010	A
SNP	309	814	NC_000913	3359916	A
SNP	310	815	NC_000913	3359937	A
SNP	311	816	NC_000913	3377162	A
SNP	312	817	NC_000913	3379594	A
SNP	313	818	NC_000913	3381442	A
SNP	314	819	NC_000913	3388041	G
SNP	315	820	NC_000913	3390213	A
SNP	316	821	NC_000913	3399260	A
SNP	317	822	NC_000913	3420842	A
SNP	318	823	NC_000913	3424524	A
SNP	319	824	NC_000913	3428727	A
SNP	320	825	NC_000913	3428825	A
SNP	321	826	NC_000913	3430588	A
SNP	322	827	NC_000913	3431506	A
SNP	323	829	NC_000913	3436419	A
SNP	324	830	NC_000913	3436697	A
SNP	325	831	NC_000913	3439003	T
SNP	326	832	NC_000913	3450966	A
SNP	327	833	NC_000913	3466533	A
SNP	328	834	NC_000913	3476485	A
SNP	329	835	NC_000913	3477781	T
SNP	330	836	NC_000913	3479373	T
SNP	331	837	NC_000913	3480842	T
SNP	332	838	NC_000913	3487784	T
SNP	333	839	NC_000913	3491210	T
SNP	334	840	NC_000913	3500982	T
SNP	335	841	NC_000913	3505751	T
SNP	336	842	NC_000913	3509233	T
INS	337	843	NC_000913	3560455	G
SNP	338	845	NC_000913	3667023	T
SNP	339	846	NC_000913	3682515	T
SNP	340	847	NC_000913	3705875	A
SNP	341	848	NC_000913	3707947	A
DEL	342	986,1020	NC_000913	3708467	168
SNP	343	849	NC_000913	3720801	T
SNP	344	850	NC_000913	3725152	A
SNP	345	851	NC_000913	3725176	G
SNP	346	853	NC_000913	3746493	A
SNP	347	854	NC_000913	3747484	T
SNP	348	856	NC_000913	3771979	T
SNP	349	857	NC_000913	3780988	A
SNP	350	858	NC_000913	3785167	A
SNP	351	859	NC_000913	3787826	A
SNP	352	860	NC_000913	3792096	A
SNP	353	861	NC_000913	3806801	T
SNP	354	862	NC_000913	3811123	A
SNP	355	863	NC_000913	3815416	T
INS	356	864	NC_000913	3815883	C
SNP	357	865	NC_000913	3817555	T
SNP	358	866	NC_000913	3818527	T
INS	359	1021	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	360	867	NC_000913	3823162	T
SNP	361	868	NC_000913	3829611	A
SNP	362	869	NC_000913	3833353	A
SNP	363	870	NC_000913	3839315	A
SNP	364	871	NC_000913	3839410	A
SNP	365	872	NC_000913	3843428	T
SNP	366	873	NC_000913	3844489	A
SNP	367	874	NC_000913	3853196	A
SNP	368	875	NC_000913	3867864	A
SNP	369	876	NC_000913	3869637	A
SNP	370	877	NC_000913	3870078	A
SNP	371	878	NC_000913	3872137	A
SNP	372	879	NC_000913	3878536	A
SNP	373	880	NC_000913	3889459	A
SNP	374	881	NC_000913	3890923	A
SNP	375	882	NC_000913	3894347	A
SNP	376	883	NC_000913	3903658	A
SNP	377	884	NC_000913	3910444	T
SNP	378	885	NC_000913	3911379	T
SNP	379	886	NC_000913	3914907	A
SNP	380	887	NC_000913	3916100	A
SNP	381	888	NC_000913	3917093	A
SNP	382	889	NC_000913	3920136	A
SNP	383	890	NC_000913	3954459	T
SNP	384	891	NC_000913	3961662	T
SNP	385	892	NC_000913	3965174	A
SNP	386	893	NC_000913	3968683	A
SNP	387	894	NC_000913	3969748	C
SNP	388	895	NC_000913	3993531	C
SNP	389	896	NC_000913	3997261	A
SNP	390	897	NC_000913	4005738	A
SNP	391	898	NC_000913	4009250	A
SNP	392	899	NC_000913	4009552	A
SNP	393	900	NC_000913	4015364	C
SNP	394	901	NC_000913	4017606	A
SNP	395	902	NC_000913	4020530	A
SNP	396	903	NC_000913	4022421	A
SNP	397	904	NC_000913	4025213	A
SNP	398	905	NC_000913	4027752	A
SNP	399	906	NC_000913	4031591	A
SNP	400	907	NC_000913	4033621	A
SNP	401	908	NC_000913	4037278	A
SNP	402	909	NC_000913	4064842	T
SNP	403	910	NC_000913	4069091	T
SNP	404	911	NC_000913	4084903	G
SNP	405	912	NC_000913	4090609	G
SNP	406	913	NC_000913	4092703	G
SNP	407	914	NC_000913	4111379	T
SNP	408	915	NC_000913	4112203	T
SNP	409	916	NC_000913	4113851	A
SNP	410	918	NC_000913	4143377	T
SNP	411	919	NC_000913	4161248	T
SNP	412	920	NC_000913	4164123	G
SNP	413	921	NC_000913	4193850	A
SNP	414	922	NC_000913	4193996	G
SNP	415	923	NC_000913	4215347	A
SNP	416	924	NC_000913	4223638	C
SNP	417	925	NC_000913	4238016	A
SNP	418	926	NC_000913	4256705	T
SNP	419	927	NC_000913	4256736	T
SNP	420	928	NC_000913	4257546	T
SNP	421	929	NC_000913	4269737	T
SNP	422	930	NC_000913	4269904	T
SUB	423	931,932	NC_000913	4293781	2	AT
INS	424	935,936	NC_000913	4296381	GC
SNP	425	937	NC_000913	4325644	T
SNP	426	938	NC_000913	4385260	T
SNP	427	939	NC_000913	4386666	T
SNP	428	940	NC_000913	4389369	G
SNP	429	941	NC_000913	4392997	A
SNP	430	942	NC_000913	4393552	A
SNP	431	943	NC_000913	4396373	T
SNP	432	944	NC_000913	4396772	C
SNP	433	945	NC_000913	4425688	A
SNP	434	946	NC_000913	4425696	A
SNP	435	947	NC_000913	4442405	T
SNP	436	948	NC_000913	4453213	A
SNP	437	949	NC_000913	4456339	T
SNP	438	950	NC_000913	4457569	T
SNP	439	951	NC_000913	4457803	A
SNP	440	952	NC_000913	4457874	T
SNP	441	953	NC_000913	4460754	T
SNP	442	954	NC_000913	4461891	T
SNP	443	955	NC_000913	4462277	T
SNP	444	956	NC_000913	4462776	T
SNP	445	957	NC_000913	4462941	T
SNP	446	958	NC_000913	4463138	T
SNP	447	959	NC_000913	4471404	T
SNP	448	960	NC_000913	4486407	T
SNP	449	961	NC_000913	4494432	T
SNP	450	962	NC_000913	4495621	T
SNP	451	963	NC_000913	4510238	G
SNP	452	964	NC_000913	4512344	T
SNP	453	965	NC_000913	4513529	T
SNP	454	966	NC_000913	4517591	T
SNP	455	967	NC_000913	4518930	C
SNP	456	968	NC_000913	4521584	T
SNP	457	969	NC_000913	4523866	T
SNP	458	970	NC_000913	4526856	T
SNP	459	971	NC_000913	4532409	G
SNP	460	972	NC_000913	4546601	T
SNP	461	973	NC_000913	4549907	T
SNP	462	974	NC_000913	4618086	A
SNP	463	975	NC_000913	4618623	A
SNP	464	976	NC_000913	4631521	A
SNP	465	977	NC_000913	4636925	C
SNP	466	978	NC_000913	4638240	A
SNP	467	979	NC_000913	4638495	A
RA	468	.	NC_000913	36	0	C	A	bias_e_value=4.19873	bias_p_value=9.04577e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.5	fisher_strand_p_value=5.08341e-08	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=58/19	major_frequency=7.857e-01	minor_base=A	minor_cov=2/19	new_cov=2/19	polymorphism_frequency=2.143e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=58/19	total_cov=60/38
RA	469	.	NC_000913	6368	0	G	A	consensus_score=215.5	frequency=1	major_base=A	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	470	.	NC_000913	22796	0	G	A	consensus_score=234.6	frequency=1	major_base=A	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	471	.	NC_000913	25374	0	G	A	consensus_score=234.3	frequency=1	major_base=A	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	472	.	NC_000913	26931	0	G	A	consensus_score=316.2	frequency=1	major_base=A	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	473	.	NC_000913	30326	0	G	A	consensus_score=336.2	frequency=1	major_base=A	major_cov=56/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/42
RA	474	.	NC_000913	34521	0	G	A	consensus_score=357.7	frequency=1	major_base=A	major_cov=47/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/57
RA	475	.	NC_000913	58044	0	G	A	consensus_score=276.7	frequency=1	major_base=A	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	476	.	NC_000913	59295	0	G	A	bias_e_value=3980070	bias_p_value=0.857468	consensus_score=319.0	fisher_strand_p_value=0.516086	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/41	major_frequency=9.806e-01	minor_base=G	minor_cov=2/0	new_cov=60/41	polymorphism_frequency=9.806e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=2/0	total_cov=62/41
RA	477	.	NC_000913	61932	0	G	A	bias_e_value=3990040	bias_p_value=0.859617	consensus_score=288.5	fisher_strand_p_value=0.519351	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/35	major_frequency=9.778e-01	minor_base=C	minor_cov=2/0	new_cov=53/35	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/35
RA	478	.	NC_000913	75749	0	G	A	consensus_score=230.9	frequency=1	major_base=A	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	479	.	NC_000913	80413	0	T	C	consensus_score=282.0	frequency=1	major_base=C	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	480	.	NC_000913	87729	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=338.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/37	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=64/37	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/37
RA	481	.	NC_000913	98436	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=278.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/35	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=45/35	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/35
RA	482	.	NC_000913	112666	0	T	C	bias_e_value=3479540	bias_p_value=0.749633	consensus_score=326.6	fisher_strand_p_value=0.382022	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=33/55	major_frequency=9.888e-01	minor_base=A	minor_cov=1/0	new_cov=33/55	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/55
RA	483	.	NC_000913	115017	0	G	A	consensus_score=292.1	frequency=1	major_base=A	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	484	.	NC_000913	131517	0	G	A	bias_e_value=3856010	bias_p_value=0.830742	consensus_score=388.0	fisher_strand_p_value=0.477876	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/59	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=53/59	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/59
RA	485	.	NC_000913	134947	0	G	A	consensus_score=313.0	frequency=1	major_base=A	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	486	.	NC_000913	141849	0	C	A	bias_e_value=0.00700049	bias_p_value=1.50819e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.3	fisher_strand_p_value=6.15299e-11	frequency=2.719e-01	ks_quality_p_value=1	major_base=C	major_cov=31/52	major_frequency=7.281e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.719e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=31/52	total_cov=62/52
RA	487	.	NC_000913	144163	0	C	T	consensus_score=342.1	frequency=1	major_base=T	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	488	.	NC_000913	145144	0	C	T	bias_e_value=3679710	bias_p_value=0.792759	consensus_score=388.1	fisher_strand_p_value=0.429825	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/65	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=48/65	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/65
RA	489	.	NC_000913	157279	0	C	T	consensus_score=480.3	frequency=1	major_base=T	major_cov=58/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/79
RA	490	.	NC_000913	159061	0	C	T	consensus_score=324.3	frequency=1	major_base=T	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	491	.	NC_000913	159971	0	C	T	consensus_score=280.9	frequency=1	major_base=T	major_cov=60/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/21
RA	492	.	NC_000913	162659	0	C	T	consensus_score=231.7	frequency=1	major_base=T	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	493	.	NC_000913	171222	0	C	T	bias_e_value=3684450	bias_p_value=0.793779	consensus_score=194.7	fisher_strand_p_value=0.431034	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/33	major_frequency=9.828e-01	minor_base=C	minor_cov=1/0	new_cov=24/33	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=25/33
RA	494	.	NC_000913	173721	0	C	T	consensus_score=249.9	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	495	.	NC_000913	181564	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=401.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/62	major_frequency=9.914e-01	minor_base=G	minor_cov=0/1	new_cov=53/62	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/63
RA	496	.	NC_000913	202488	0	G	A	consensus_score=336.3	frequency=1	major_base=A	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	497	.	NC_000913	209650	0	A	G	consensus_score=381.9	frequency=1	major_base=G	major_cov=54/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	498	.	NC_000913	211411	0	C	T	consensus_score=451.0	frequency=1	major_base=T	major_cov=67/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/62
RA	499	.	NC_000913	211536	0	C	T	consensus_score=414.3	frequency=1	major_base=T	major_cov=59/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/62
RA	500	.	NC_000913	213688	0	C	T	consensus_score=275.4	frequency=1	major_base=T	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	501	.	NC_000913	214607	0	C	T	consensus_score=333.2	frequency=1	major_base=T	major_cov=52/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	502	.	NC_000913	215947	0	C	T	bias_e_value=2374010	bias_p_value=0.511458	consensus_score=388.8	fisher_strand_p_value=0.193584	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/48	major_frequency=9.823e-01	minor_base=G	minor_cov=0/2	new_cov=63/48	polymorphism_frequency=9.823e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/50
RA	503	.	NC_000913	218136	0	C	T	consensus_score=244.2	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	504	.	NC_000913	222784	0	C	T	consensus_score=350.8	frequency=1	major_base=T	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	505	.	NC_000913	232646	0	C	T	consensus_score=278.9	frequency=1	major_base=T	major_cov=27/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/59
RA	506	.	NC_000913	237310	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=392.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=51/57	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=51/57	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	507	.	NC_000913	239802	0	C	T	consensus_score=208.5	frequency=1	major_base=T	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	508	.	NC_000913	240993	0	C	T	consensus_score=346.2	frequency=1	major_base=T	major_cov=39/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/63
RA	509	.	NC_000913	246747	0	G	T	consensus_score=360.3	frequency=1	major_base=T	major_cov=48/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/54
RA	510	.	NC_000913	250724	0	C	T	consensus_score=294.0	frequency=1	major_base=T	major_cov=26/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/60
RA	511	.	NC_000913	251069	0	C	T	consensus_score=217.4	frequency=1	major_base=T	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	512	.	NC_000913	258986	0	C	T	bias_e_value=3694540	bias_p_value=0.795954	consensus_score=394.4	fisher_strand_p_value=0.433628	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=64/48	major_frequency=9.912e-01	minor_base=G	minor_cov=0/1	new_cov=64/48	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/49
RA	513	.	NC_000913	279397	0	C	T	consensus_score=68.1	frequency=1	major_base=T	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	514	.	NC_000913	284535	0	T	G	consensus_score=158.7	frequency=1	major_base=G	major_cov=20/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	515	.	NC_000913	286737	0	G	A	consensus_score=129.9	frequency=1	major_base=A	major_cov=23/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/16
RA	516	.	NC_000913	286741	0	G	A	consensus_score=115.1	frequency=1	major_base=A	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	517	.	NC_000913	303936	0	C	T	bias_e_value=4641500	bias_p_value=0.999966	consensus_score=321.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991798	major_base=T	major_cov=52/41	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=52/41	polymorphism_frequency=9.894e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=53/42
RA	518	.	NC_000913	313543	0	G	A	consensus_score=337.1	frequency=1	major_base=A	major_cov=56/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/46
RA	519	.	NC_000913	339935	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=86.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/18	major_frequency=9.697e-01	minor_base=C	minor_cov=0/1	new_cov=14/18	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=14/19
RA	520	.	NC_000913	339941	0	C	T	consensus_score=89.8	frequency=1	major_base=T	major_cov=14/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	521	.	NC_000913	339958	0	G	A	consensus_score=86.2	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	522	.	NC_000913	339979	0	G	A	bias_e_value=4337880	bias_p_value=0.934556	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.3	fisher_strand_p_value=0.660761	frequency=6.800e-01	ks_quality_p_value=1	major_base=A	major_cov=7/10	major_frequency=6.800e-01	minor_base=G	minor_cov=2/6	new_cov=7/10	polymorphism_frequency=6.800e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=2/6	total_cov=9/16
RA	523	.	NC_000913	339986	0	G	A	bias_e_value=3389030	bias_p_value=0.730134	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.2	fisher_strand_p_value=0.362297	frequency=7.200e-01	ks_quality_p_value=1	major_base=A	major_cov=7/11	major_frequency=7.200e-01	minor_base=G	minor_cov=1/6	new_cov=7/11	polymorphism_frequency=7.200e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=1/6	total_cov=8/17
RA	524	.	NC_000913	339992	0	C	.	bias_e_value=3349070	bias_p_value=0.721526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.7	fisher_strand_p_value=0.363211	frequency=2.593e-01	ks_quality_p_value=0.974407	major_base=C	major_cov=8/12	major_frequency=7.407e-01	minor_base=.	minor_cov=1/6	new_cov=1/6	polymorphism_frequency=2.593e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=8/12	total_cov=9/18
RA	525	.	NC_000913	359642	0	G	A	bias_e_value=3845240	bias_p_value=0.828421	consensus_score=334.6	fisher_strand_p_value=0.474747	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/52	major_frequency=9.899e-01	minor_base=G	minor_cov=1/0	new_cov=46/52	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=47/52
RA	526	.	NC_000913	377292	0	C	T	consensus_score=109.5	frequency=1	major_base=T	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	527	.	NC_000913	379592	0	G	A	consensus_score=402.6	frequency=1	major_base=A	major_cov=53/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/64
RA	528	.	NC_000913	393962	0	C	T	consensus_score=252.2	frequency=1	major_base=T	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	529	.	NC_000913	402101	0	G	A	consensus_score=299.0	frequency=1	major_base=A	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	530	.	NC_000913	424981	0	C	T	consensus_score=270.0	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	531	.	NC_000913	466884	0	G	A	bias_e_value=3822940	bias_p_value=0.823615	consensus_score=268.7	fisher_strand_p_value=0.468354	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/42	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=36/42	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	532	.	NC_000913	469175	0	G	A	bias_e_value=3669330	bias_p_value=0.790522	consensus_score=352.5	fisher_strand_p_value=0.427184	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/59	major_frequency=9.903e-01	minor_base=C	minor_cov=1/0	new_cov=43/59	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/59
RA	533	.	NC_000913	472100	0	C	T	consensus_score=184.5	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	534	.	NC_000913	480295	0	G	A	consensus_score=494.3	frequency=1	major_base=A	major_cov=64/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/77
RA	535	.	NC_000913	480296	0	G	A	consensus_score=493.8	frequency=1	major_base=A	major_cov=64/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/77
RA	536	.	NC_000913	502527	0	C	T	consensus_score=256.9	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	537	.	NC_000913	538869	0	G	T	consensus_score=441.3	frequency=1	major_base=T	major_cov=69/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/57
RA	538	.	NC_000913	548951	0	C	T	consensus_score=269.7	frequency=1	major_base=T	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	539	.	NC_000913	556653	0	G	A	bias_e_value=4641520	bias_p_value=0.999972	consensus_score=214.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992569	major_base=A	major_cov=23/42	major_frequency=9.848e-01	minor_base=.	minor_cov=0/1	new_cov=23/42	polymorphism_frequency=9.848e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=23/43
RA	540	.	NC_000913	561489	0	C	T	consensus_score=387.7	frequency=1	major_base=T	major_cov=44/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/66
RA	541	.	NC_000913	562281	0	G	A	consensus_score=411.1	frequency=1	major_base=A	major_cov=71/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/46
RA	542	.	NC_000913	573977	0	C	T	bias_e_value=3870980	bias_p_value=0.833966	consensus_score=487.1	fisher_strand_p_value=0.48227	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=67/73	major_frequency=9.929e-01	minor_base=C	minor_cov=1/0	new_cov=67/73	polymorphism_frequency=9.929e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=68/74
RA	543	.	NC_000913	590946	0	C	T	bias_e_value=195.808	bias_p_value=4.21849e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.6	fisher_strand_p_value=3.08141e-06	frequency=2.247e-01	ks_quality_p_value=1	major_base=C	major_cov=31/38	major_frequency=7.753e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.247e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=31/38	total_cov=52/38
RA	544	.	NC_000913	590965	0	C	T	bias_e_value=3780570	bias_p_value=0.814489	consensus_score=307.6	fisher_strand_p_value=0.456522	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/41	major_frequency=9.891e-01	minor_base=G	minor_cov=0/1	new_cov=50/41	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	545	.	NC_000913	599895	0	T	A	consensus_score=246.6	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	546	.	NC_000913	625184	0	G	A	consensus_score=325.2	frequency=1	major_base=A	major_cov=42/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/52
RA	547	.	NC_000913	625239	0	G	A	consensus_score=261.2	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	548	.	NC_000913	626003	0	G	A	consensus_score=179.5	frequency=1	major_base=A	major_cov=36/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/20
RA	549	.	NC_000913	632017	1	.	G	bias_e_value=549580	bias_p_value=0.118402	consensus_score=280.4	fisher_strand_p_value=0.0263503	frequency=1	ks_quality_p_value=0.960912	major_base=G	major_cov=42/34	major_frequency=8.636e-01	minor_base=.	minor_cov=2/10	new_cov=42/34	polymorphism_frequency=8.636e-01	polymorphism_score=37.1	prediction=consensus	ref_cov=2/10	total_cov=44/44
RA	550	.	NC_000913	640875	0	G	A	consensus_score=206.4	frequency=1	major_base=A	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	551	.	NC_000913	642847	0	G	A	consensus_score=217.7	frequency=1	major_base=A	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	552	.	NC_000913	644936	0	G	A	bias_e_value=3781550	bias_p_value=0.814699	consensus_score=275.6	fisher_strand_p_value=0.45679	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/36	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/37
RA	553	.	NC_000913	646765	0	G	A	consensus_score=324.3	frequency=1	major_base=A	major_cov=37/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/61
RA	554	.	NC_000913	659597	0	G	A	consensus_score=279.7	frequency=1	major_base=A	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	555	.	NC_000913	663757	0	G	A	consensus_score=367.1	frequency=1	major_base=A	major_cov=46/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/60
RA	556	.	NC_000913	672861	0	G	A	bias_e_value=3761000	bias_p_value=0.810273	consensus_score=338.3	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.992606	major_base=A	major_cov=54/44	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=54/45
RA	557	.	NC_000913	681334	0	G	A	consensus_score=344.2	frequency=1	major_base=A	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	558	.	NC_000913	685247	0	G	A	bias_e_value=3276340	bias_p_value=0.705856	consensus_score=395.0	fisher_strand_p_value=0.33913	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/76	major_frequency=9.913e-01	minor_base=C	minor_cov=1/0	new_cov=38/76	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/76
RA	559	.	NC_000913	686770	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=336.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/48	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=51/48	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/48
RA	560	.	NC_000913	687474	0	G	A	consensus_score=372.8	frequency=1	major_base=A	major_cov=40/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/68
RA	561	.	NC_000913	690924	0	C	T	consensus_score=247.3	frequency=1	major_base=T	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	562	.	NC_000913	690948	0	G	A	consensus_score=245.3	frequency=1	major_base=A	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	563	.	NC_000913	694826	0	G	A	consensus_score=257.9	frequency=1	major_base=A	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	564	.	NC_000913	700038	0	G	A	consensus_score=245.1	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	565	.	NC_000913	702286	0	C	T	consensus_score=324.0	frequency=1	major_base=T	major_cov=43/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	566	.	NC_000913	703511	0	G	A	consensus_score=310.7	frequency=1	major_base=A	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	567	.	NC_000913	705141	0	G	A	consensus_score=342.5	frequency=1	major_base=A	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	568	.	NC_000913	709856	0	C	T	consensus_score=312.7	frequency=1	major_base=T	major_cov=43/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	569	.	NC_000913	710830	0	G	T	bias_e_value=0.000615007	bias_p_value=1.32497e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.3	fisher_strand_p_value=4.89972e-12	frequency=2.656e-01	ks_quality_p_value=1	major_base=G	major_cov=59/35	major_frequency=7.344e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.656e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=59/35	total_cov=59/69
RA	570	.	NC_000913	711895	0	C	T	consensus_score=206.0	frequency=1	major_base=T	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	571	.	NC_000913	720064	0	C	T	consensus_score=273.3	frequency=1	major_base=T	major_cov=30/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/51
RA	572	.	NC_000913	721402	0	C	T	consensus_score=274.7	frequency=1	major_base=T	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	573	.	NC_000913	722075	0	C	T	bias_e_value=3773360	bias_p_value=0.812935	consensus_score=372.5	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/49	major_frequency=9.909e-01	minor_base=G	minor_cov=0/1	new_cov=60/49	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/50
RA	574	.	NC_000913	722941	0	C	T	consensus_score=212.3	frequency=1	major_base=T	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	575	.	NC_000913	731565	0	C	T	consensus_score=34.3	deleted=1	frequency=1	major_base=T	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	576	.	NC_000913	737835	0	G	A	consensus_score=324.2	frequency=1	major_base=A	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	577	.	NC_000913	745696	0	G	A	consensus_score=220.0	frequency=1	major_base=A	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	578	.	NC_000913	778688	0	G	A	consensus_score=277.8	frequency=1	major_base=A	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	579	.	NC_000913	779297	0	G	A	consensus_score=354.3	frequency=1	major_base=A	major_cov=38/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/65
RA	580	.	NC_000913	781285	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=202.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/35	major_frequency=9.474e-01	minor_base=G	minor_cov=2/2	new_cov=37/35	polymorphism_frequency=9.474e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=2/2	total_cov=39/37
RA	581	.	NC_000913	799545	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=301.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/44	major_frequency=9.888e-01	minor_base=G	minor_cov=1/0	new_cov=44/44	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/44
RA	582	.	NC_000913	805637	0	G	A	consensus_score=375.9	frequency=1	major_base=A	major_cov=70/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/49
RA	583	.	NC_000913	809217	0	C	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=268.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998669	major_base=A	major_cov=42/35	major_frequency=9.872e-01	minor_base=C	minor_cov=1/0	new_cov=42/35	polymorphism_frequency=9.872e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=1/0	total_cov=43/35
RA	584	.	NC_000913	809218	0	A	G	consensus_score=295.3	frequency=1	major_base=G	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	585	.	NC_000913	813709	0	G	A	consensus_score=266.7	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	586	.	NC_000913	826365	0	G	A	bias_e_value=3828720	bias_p_value=0.824861	consensus_score=332.4	fisher_strand_p_value=0.47	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/53	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=46/53	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	587	.	NC_000913	834674	0	C	A	bias_e_value=0.0306512	bias_p_value=6.60351e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.5	fisher_strand_p_value=2.87486e-10	frequency=2.647e-01	ks_quality_p_value=1	major_base=C	major_cov=26/49	major_frequency=7.353e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.647e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=26/49	total_cov=53/49
RA	588	.	NC_000913	846231	0	T	C	consensus_score=393.1	frequency=1	major_base=C	major_cov=59/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/44
RA	589	.	NC_000913	847955	0	G	A	bias_e_value=6.60377e-06	bias_p_value=1.42272e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.4	fisher_strand_p_value=4.483e-14	frequency=2.568e-01	ks_quality_p_value=1	major_base=G	major_cov=71/39	major_frequency=7.432e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.568e-01	polymorphism_score=38.8	prediction=polymorphism	ref_cov=71/39	total_cov=71/78
RA	590	.	NC_000913	848028	0	G	T	bias_e_value=0.00122479	bias_p_value=2.6387e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.9	fisher_strand_p_value=1.00231e-11	frequency=2.302e-01	ks_quality_p_value=1	major_base=G	major_cov=67/40	major_frequency=7.698e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.302e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=67/40	total_cov=67/72
RA	591	.	NC_000913	852953	0	G	A	bias_e_value=3497820	bias_p_value=0.753572	consensus_score=339.6	fisher_strand_p_value=0.386139	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/62	major_frequency=9.901e-01	minor_base=G	minor_cov=1/0	new_cov=38/62	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/62
RA	592	.	NC_000913	861095	0	C	T	consensus_score=257.8	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	593	.	NC_000913	866319	0	C	A	bias_e_value=1.35345	bias_p_value=2.91588e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.3	fisher_strand_p_value=1.53533e-08	frequency=3.367e-01	ks_quality_p_value=1	major_base=C	major_cov=31/34	major_frequency=6.633e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.367e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=31/34	total_cov=64/34
RA	594	.	NC_000913	871791	0	G	A	consensus_score=241.4	frequency=1	major_base=A	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	595	.	NC_000913	884123	0	C	T	consensus_score=272.5	frequency=1	major_base=T	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	596	.	NC_000913	921808	0	C	T	consensus_score=317.3	frequency=1	major_base=T	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	597	.	NC_000913	941667	0	C	T	consensus_score=303.4	frequency=1	major_base=T	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	598	.	NC_000913	949385	0	C	T	bias_e_value=3700570	bias_p_value=0.797252	consensus_score=374.5	fisher_strand_p_value=0.435185	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/46	major_frequency=9.907e-01	minor_base=C	minor_cov=0/1	new_cov=61/46	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=61/48
RA	599	.	NC_000913	968837	0	G	A	consensus_score=266.4	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	600	.	NC_000913	1019715	0	G	T	consensus_score=274.3	frequency=1	major_base=T	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	601	.	NC_000913	1033251	0	G	A	consensus_score=235.7	frequency=1	major_base=A	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	602	.	NC_000913	1035375	0	G	A	bias_e_value=3985430	bias_p_value=0.858624	consensus_score=375.7	fisher_strand_p_value=0.517839	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/64	major_frequency=9.817e-01	minor_base=G	minor_cov=0/2	new_cov=43/64	polymorphism_frequency=9.817e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=43/66
RA	603	.	NC_000913	1040126	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=300.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/51	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=36/51	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/52
RA	604	.	NC_000913	1061935	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=207.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998889	major_base=A	major_cov=28/31	major_frequency=9.672e-01	minor_base=.	minor_cov=1/1	new_cov=28/31	polymorphism_frequency=9.672e-01	polymorphism_score=1.6	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	605	.	NC_000913	1097118	0	C	A	bias_e_value=3825570	bias_p_value=0.824183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.8	fisher_strand_p_value=0.485855	frequency=2.400e-01	ks_quality_p_value=0.965521	major_base=C	major_cov=11/27	major_frequency=7.600e-01	minor_base=A	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.400e-01	polymorphism_score=20.7	prediction=polymorphism	ref_cov=11/27	total_cov=16/34
RA	606	.	NC_000913	1109632	0	G	A	bias_e_value=7.5484e-05	bias_p_value=1.62623e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.5	fisher_strand_p_value=5.56606e-13	frequency=2.645e-01	ks_quality_p_value=1	major_base=G	major_cov=61/28	major_frequency=7.355e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.645e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=61/28	total_cov=61/60
RA	607	.	NC_000913	1111727	0	C	T	bias_e_value=2520530	bias_p_value=0.543025	consensus_score=278.8	fisher_strand_p_value=0.213406	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/46	major_frequency=9.767e-01	minor_base=C	minor_cov=2/0	new_cov=38/46	polymorphism_frequency=9.767e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=2/0	total_cov=40/46
RA	608	.	NC_000913	1111728	0	C	T	bias_e_value=3811480	bias_p_value=0.821148	consensus_score=288.8	fisher_strand_p_value=0.465116	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/46	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=39/46	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=40/46
RA	609	.	NC_000913	1115929	0	C	T	consensus_score=335.8	frequency=1	major_base=T	major_cov=61/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/36
RA	610	.	NC_000913	1169836	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=297.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999691	major_base=G	major_cov=35/45	major_frequency=9.877e-01	minor_base=A	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=35/46
RA	611	.	NC_000913	1173479	0	G	A	consensus_score=329.8	frequency=1	major_base=A	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	612	.	NC_000913	1179499	0	G	A	consensus_score=373.4	frequency=1	major_base=A	major_cov=58/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/50
RA	613	.	NC_000913	1180740	0	A	G	consensus_score=484.1	frequency=1	major_base=G	major_cov=63/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/69
RA	614	.	NC_000913	1189980	0	A	G	consensus_score=324.2	frequency=1	major_base=G	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	615	.	NC_000913	1193169	0	C	T	consensus_score=338.3	frequency=1	major_base=T	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	616	.	NC_000913	1196220	0	C	T	consensus_score=199.5	frequency=1	major_base=T	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	617	.	NC_000913	1196232	0	C	T	consensus_score=179.0	frequency=1	major_base=T	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	618	.	NC_000913	1196245	0	T	C	consensus_score=177.0	frequency=1	major_base=C	major_cov=25/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/34
RA	619	.	NC_000913	1196247	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=176.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=24/33	major_frequency=9.828e-01	minor_base=A	minor_cov=0/1	new_cov=24/33	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/34
RA	620	.	NC_000913	1196277	0	C	T	consensus_score=122.2	frequency=1	major_base=T	major_cov=20/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	621	.	NC_000913	1196280	0	G	C	consensus_score=121.6	frequency=1	major_base=C	major_cov=20/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	622	.	NC_000913	1196283	0	A	G	consensus_score=127.8	frequency=1	major_base=G	major_cov=20/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	623	.	NC_000913	1196292	0	C	T	consensus_score=121.8	frequency=1	major_base=T	major_cov=20/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/25
RA	624	.	NC_000913	1196304	0	G	A	consensus_score=97.1	frequency=1	major_base=A	major_cov=17/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/22
RA	625	.	NC_000913	1196316	0	T	A	consensus_score=77.3	frequency=1	major_base=A	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	626	.	NC_000913	1196325	0	A	G	consensus_score=51.4	deleted=1	frequency=1	major_base=G	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	627	.	NC_000913	1196352	0	C	A	consensus_score=35.4	deleted=1	frequency=1	major_base=A	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	628	.	NC_000913	1219718	0	G	A	consensus_score=559.9	frequency=1	major_base=A	major_cov=74/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/87
RA	629	.	NC_000913	1244207	0	G	A	consensus_score=316.8	frequency=1	major_base=A	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	630	.	NC_000913	1246166	0	G	A	consensus_score=305.1	frequency=1	major_base=A	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	631	.	NC_000913	1248115	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=298.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=57/32	major_frequency=9.780e-01	minor_base=C	minor_cov=1/1	new_cov=57/32	polymorphism_frequency=9.780e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/33
RA	632	.	NC_000913	1253880	0	G	A	consensus_score=310.1	frequency=1	major_base=A	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	633	.	NC_000913	1258716	0	G	A	consensus_score=324.7	frequency=1	major_base=A	major_cov=43/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/53
RA	634	.	NC_000913	1262852	0	G	A	consensus_score=227.2	frequency=1	major_base=A	major_cov=45/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/24
RA	635	.	NC_000913	1263854	0	G	A	consensus_score=274.0	frequency=1	major_base=A	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	636	.	NC_000913	1269279	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=25/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/45
RA	637	.	NC_000913	1272420	0	C	A	bias_e_value=1.01625	bias_p_value=2.18942e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.7	fisher_strand_p_value=1.13475e-08	frequency=2.545e-01	ks_quality_p_value=1	major_base=C	major_cov=35/47	major_frequency=7.455e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.545e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=35/47	total_cov=63/48
RA	638	.	NC_000913	1275732	0	G	A	consensus_score=291.2	frequency=1	major_base=A	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	639	.	NC_000913	1279166	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=362.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999817	major_base=A	major_cov=58/46	major_frequency=9.905e-01	minor_base=G	minor_cov=1/0	new_cov=58/46	polymorphism_frequency=9.905e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=59/46
RA	640	.	NC_000913	1284154	0	G	A	consensus_score=370.3	frequency=1	major_base=A	major_cov=48/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/57
RA	641	.	NC_000913	1297195	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=328.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/51	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=45/51	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=46/52
RA	642	.	NC_000913	1301992	0	A	T	consensus_score=375.4	frequency=1	major_base=T	major_cov=53/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	643	.	NC_000913	1305512	0	G	A	consensus_score=232.9	frequency=1	major_base=A	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	644	.	NC_000913	1306736	0	T	G	consensus_score=391.5	frequency=1	major_base=G	major_cov=60/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/43
RA	645	.	NC_000913	1310770	0	A	G	consensus_score=372.9	frequency=1	major_base=G	major_cov=58/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/41
RA	646	.	NC_000913	1313378	0	G	A	bias_e_value=3779190	bias_p_value=0.81419	consensus_score=387.4	fisher_strand_p_value=0.45614	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/62	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=51/62	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/62
RA	647	.	NC_000913	1314016	0	G	A	consensus_score=398.8	frequency=1	major_base=A	major_cov=56/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/59
RA	648	.	NC_000913	1315078	0	G	A	bias_e_value=3876390	bias_p_value=0.835131	consensus_score=424.6	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=59/64	major_frequency=9.919e-01	minor_base=C	minor_cov=1/0	new_cov=59/64	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/64
RA	649	.	NC_000913	1315678	0	G	A	consensus_score=311.2	frequency=1	major_base=A	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	650	.	NC_000913	1321850	0	A	G	consensus_score=245.6	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	651	.	NC_000913	1335034	0	G	T	bias_e_value=1.8274e-07	bias_p_value=3.93696e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.3	fisher_strand_p_value=1.11108e-15	frequency=2.927e-01	ks_quality_p_value=1	major_base=G	major_cov=71/45	major_frequency=7.073e-01	minor_base=T	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=2.927e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=71/45	total_cov=71/93
RA	652	.	NC_000913	1337394	0	A	G	bias_e_value=3567120	bias_p_value=0.768502	consensus_score=326.7	fisher_strand_p_value=0.402174	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/36	major_frequency=9.891e-01	minor_base=T	minor_cov=0/1	new_cov=55/36	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/37
RA	653	.	NC_000913	1339286	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=362.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/58	major_frequency=9.904e-01	minor_base=C	minor_cov=0/1	new_cov=45/58	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	654	.	NC_000913	1340566	0	G	A	consensus_score=240.7	frequency=1	major_base=A	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	655	.	NC_000913	1341553	0	G	A	consensus_score=341.2	frequency=1	major_base=A	major_cov=66/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/37
RA	656	.	NC_000913	1345043	0	G	A	consensus_score=356.1	frequency=1	major_base=A	major_cov=55/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/48
RA	657	.	NC_000913	1345822	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=445.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/58	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=68/58	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/58
RA	658	.	NC_000913	1345878	0	C	T	consensus_score=477.3	frequency=1	major_base=T	major_cov=78/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/62
RA	659	.	NC_000913	1347874	0	G	A	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=258.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997083	major_base=A	major_cov=39/39	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=39/39	polymorphism_frequency=9.873e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	660	.	NC_000913	1349363	0	G	A	consensus_score=393.5	frequency=1	major_base=A	major_cov=70/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/52
RA	661	.	NC_000913	1350035	0	C	T	consensus_score=317.4	frequency=1	major_base=T	major_cov=56/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/34
RA	662	.	NC_000913	1350046	0	G	A	consensus_score=336.7	frequency=1	major_base=A	major_cov=64/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/32
RA	663	.	NC_000913	1357202	0	C	T	consensus_score=410.9	frequency=1	major_base=T	major_cov=54/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	664	.	NC_000913	1358859	0	T	C	consensus_score=332.3	frequency=1	major_base=C	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	665	.	NC_000913	1359826	0	G	A	consensus_score=261.0	frequency=1	major_base=A	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	666	.	NC_000913	1363995	0	C	T	consensus_score=213.5	frequency=1	major_base=T	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	667	.	NC_000913	1375364	0	G	A	consensus_score=238.2	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	668	.	NC_000913	1376943	0	G	A	consensus_score=163.1	frequency=1	major_base=A	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	669	.	NC_000913	1378748	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=280.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/35	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=50/35	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	670	.	NC_000913	1378754	0	G	A	consensus_score=277.2	frequency=1	major_base=A	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	671	.	NC_000913	1379153	0	G	A	consensus_score=318.5	frequency=1	major_base=A	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	672	.	NC_000913	1384743	0	C	T	consensus_score=213.2	frequency=1	major_base=T	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	673	.	NC_000913	1388891	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=328.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/52	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=45/52	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/53
RA	674	.	NC_000913	1390303	0	C	T	consensus_score=237.0	frequency=1	major_base=T	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	675	.	NC_000913	1390834	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=333.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/51	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=46/51	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	676	.	NC_000913	1396062	0	C	T	consensus_score=332.1	frequency=1	major_base=T	major_cov=30/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/68
RA	677	.	NC_000913	1401254	0	C	T	consensus_score=350.9	frequency=1	major_base=T	major_cov=64/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/36
RA	678	.	NC_000913	1411942	0	C	T	consensus_score=354.7	frequency=1	major_base=T	major_cov=47/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/58
RA	679	.	NC_000913	1415168	0	C	T	consensus_score=323.2	frequency=1	major_base=T	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	680	.	NC_000913	1416515	0	C	T	consensus_score=283.2	frequency=1	major_base=T	major_cov=34/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/47
RA	681	.	NC_000913	1418843	0	C	T	consensus_score=453.3	frequency=1	major_base=T	major_cov=79/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/52
RA	682	.	NC_000913	1428218	0	C	T	consensus_score=223.3	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	683	.	NC_000913	1430016	0	C	T	consensus_score=177.2	frequency=1	major_base=T	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	684	.	NC_000913	1435735	0	C	T	consensus_score=491.0	frequency=1	major_base=T	major_cov=66/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/74
RA	685	.	NC_000913	1436556	0	C	T	bias_e_value=3860430	bias_p_value=0.831693	consensus_score=313.6	fisher_strand_p_value=0.479167	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/45	major_frequency=9.896e-01	minor_base=G	minor_cov=0/1	new_cov=50/45	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	686	.	NC_000913	1440002	0	C	T	consensus_score=323.3	frequency=1	major_base=T	major_cov=62/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/31
RA	687	.	NC_000913	1444525	0	C	T	consensus_score=220.9	frequency=1	major_base=T	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	688	.	NC_000913	1444631	0	C	T	consensus_score=209.3	frequency=1	major_base=T	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	689	.	NC_000913	1461156	0	C	T	consensus_score=347.9	frequency=1	major_base=T	major_cov=61/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	690	.	NC_000913	1461753	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=257.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999649	major_base=T	major_cov=19/56	major_frequency=9.868e-01	minor_base=G	minor_cov=0/1	new_cov=19/56	polymorphism_frequency=9.868e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=19/57
RA	691	.	NC_000913	1466432	0	A	G	bias_e_value=4509610	bias_p_value=0.971554	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.8	fisher_strand_p_value=0.771162	frequency=2.206e-01	ks_quality_p_value=1	major_base=A	major_cov=25/28	major_frequency=7.794e-01	minor_base=G	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=2.206e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=25/28	total_cov=31/37
RA	692	.	NC_000913	1467929	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=326.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99979	major_base=T	major_cov=42/55	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=42/55	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	693	.	NC_000913	1488147	0	C	T	consensus_score=407.1	frequency=1	major_base=T	major_cov=54/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	694	.	NC_000913	1489861	0	C	T	consensus_score=374.1	frequency=1	major_base=T	major_cov=59/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/49
RA	695	.	NC_000913	1494852	1	.	A	bias_e_value=3918150	bias_p_value=0.844128	consensus_score=322.1	fisher_strand_p_value=0.497429	frequency=1	ks_quality_p_value=0.998111	major_base=A	major_cov=43/48	major_frequency=9.785e-01	minor_base=.	minor_cov=0/2	new_cov=43/48	polymorphism_frequency=9.785e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=0/2	total_cov=43/50
RA	696	.	NC_000913	1495978	0	G	A	consensus_score=314.8	frequency=1	major_base=A	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	697	.	NC_000913	1502770	0	T	C	bias_e_value=9.27252	bias_p_value=1.99768e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.6	fisher_strand_p_value=1.17829e-07	frequency=2.604e-01	ks_quality_p_value=1	major_base=T	major_cov=40/31	major_frequency=7.396e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.604e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=40/31	total_cov=40/56
RA	698	.	NC_000913	1502772	0	G	A	bias_e_value=14.7484	bias_p_value=3.17739e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.6	fisher_strand_p_value=1.93032e-07	frequency=2.947e-01	ks_quality_p_value=1	major_base=G	major_cov=39/28	major_frequency=7.053e-01	minor_base=A	minor_cov=1/27	new_cov=1/27	polymorphism_frequency=2.947e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=39/28	total_cov=40/55
RA	699	.	NC_000913	1509592	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=348.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=69/37	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=69/37	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/37
RA	700	.	NC_000913	1509772	0	T	A	consensus_score=383.1	frequency=1	major_base=A	major_cov=58/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/54
RA	701	.	NC_000913	1510883	0	C	T	bias_e_value=2239950	bias_p_value=0.482577	consensus_score=280.0	fisher_strand_p_value=0.176471	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/34	major_frequency=9.765e-01	minor_base=G	minor_cov=0/2	new_cov=49/34	polymorphism_frequency=9.765e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	702	.	NC_000913	1514317	0	G	A	consensus_score=352.7	frequency=1	major_base=A	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	703	.	NC_000913	1521013	0	G	A	consensus_score=515.5	frequency=1	major_base=A	major_cov=76/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/71
RA	704	.	NC_000913	1522601	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=283.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/57	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=25/57	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/58
RA	705	.	NC_000913	1523628	0	A	G	consensus_score=306.1	frequency=1	major_base=G	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	706	.	NC_000913	1531969	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=465.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998027	major_base=A	major_cov=53/81	major_frequency=9.853e-01	minor_base=.	minor_cov=1/1	new_cov=53/81	polymorphism_frequency=9.853e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=0/0	total_cov=55/82
RA	707	.	NC_000913	1540097	0	C	T	consensus_score=250.1	frequency=1	major_base=T	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	708	.	NC_000913	1544540	0	C	T	consensus_score=335.7	frequency=1	major_base=T	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	709	.	NC_000913	1555122	0	C	T	consensus_score=285.0	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	710	.	NC_000913	1557720	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=246.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/29	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=45/29	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/29
RA	711	.	NC_000913	1558635	0	C	T	consensus_score=283.9	frequency=1	major_base=T	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	712	.	NC_000913	1559106	0	C	T	consensus_score=315.2	frequency=1	major_base=T	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	713	.	NC_000913	1567576	0	G	A	bias_e_value=3500710	bias_p_value=0.754194	consensus_score=373.4	fisher_strand_p_value=0.386792	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/65	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=40/65	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/65
RA	714	.	NC_000913	1569391	0	A	G	bias_e_value=388852	bias_p_value=0.0837746	consensus_score=241.6	fisher_strand_p_value=0.016391	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=42/46	major_frequency=9.263e-01	minor_base=T	minor_cov=0/7	new_cov=42/46	polymorphism_frequency=9.263e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/53
RA	715	.	NC_000913	1573933	0	G	A	consensus_score=310.0	frequency=1	major_base=A	major_cov=29/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/61
RA	716	.	NC_000913	1582470	0	C	T	consensus_score=462.7	frequency=1	major_base=T	major_cov=81/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/49
RA	717	.	NC_000913	1593789	0	C	T	bias_e_value=2719870	bias_p_value=0.58597	consensus_score=311.2	fisher_strand_p_value=0.242434	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/46	major_frequency=9.688e-01	minor_base=C	minor_cov=0/3	new_cov=47/46	polymorphism_frequency=9.688e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=0/3	total_cov=47/49
RA	718	.	NC_000913	1594311	0	C	T	consensus_score=324.4	frequency=1	major_base=T	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	719	.	NC_000913	1595917	0	C	T	bias_e_value=3585690	bias_p_value=0.772504	consensus_score=309.7	fisher_strand_p_value=0.406593	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/36	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=54/36	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/37
RA	720	.	NC_000913	1597327	0	C	T	consensus_score=388.6	frequency=1	major_base=T	major_cov=51/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/63
RA	721	.	NC_000913	1597608	0	C	T	bias_e_value=3865890	bias_p_value=0.832869	consensus_score=349.9	fisher_strand_p_value=0.480769	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/49	major_frequency=9.904e-01	minor_base=C	minor_cov=0/1	new_cov=54/49	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/50
RA	722	.	NC_000913	1598395	0	C	T	consensus_score=522.0	frequency=1	major_base=T	major_cov=68/83	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/83	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/83
RA	723	.	NC_000913	1599945	0	C	T	consensus_score=298.7	frequency=1	major_base=T	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	724	.	NC_000913	1600113	0	C	T	consensus_score=342.5	frequency=1	major_base=T	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	725	.	NC_000913	1603061	0	C	T	bias_e_value=3906610	bias_p_value=0.841642	consensus_score=245.2	fisher_strand_p_value=0.492958	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/34	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=36/34	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	726	.	NC_000913	1603368	0	C	T	bias_e_value=3873940	bias_p_value=0.834604	consensus_score=304.9	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/46	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=42/46	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/46
RA	727	.	NC_000913	1617801	0	C	T	consensus_score=326.0	frequency=1	major_base=T	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	728	.	NC_000913	1643679	0	A	T	consensus_score=267.9	frequency=1	major_base=T	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	729	.	NC_000913	1647571	0	T	C	consensus_score=300.1	frequency=1	major_base=C	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	730	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=350.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/44	major_frequency=9.891e-01	minor_base=A	minor_cov=1/0	new_cov=47/44	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	731	.	NC_000913	1695623	0	G	A	consensus_score=293.2	frequency=1	major_base=A	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	732	.	NC_000913	1721136	0	C	T	consensus_score=429.8	frequency=1	major_base=T	major_cov=52/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/75
RA	733	.	NC_000913	1737533	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=517.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=58/93	major_frequency=9.934e-01	minor_base=G	minor_cov=0/1	new_cov=58/93	polymorphism_frequency=9.934e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/94
RA	734	.	NC_000913	1741751	0	G	A	consensus_score=350.8	frequency=1	major_base=A	major_cov=45/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/57
RA	735	.	NC_000913	1752136	0	G	A	consensus_score=348.0	frequency=1	major_base=A	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	736	.	NC_000913	1756353	0	C	A	bias_e_value=0.0415117	bias_p_value=8.94331e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.0	fisher_strand_p_value=3.94802e-10	frequency=2.982e-01	ks_quality_p_value=1	major_base=C	major_cov=34/46	major_frequency=7.018e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.982e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=34/46	total_cov=68/46
RA	737	.	NC_000913	1776715	0	A	T	consensus_score=427.0	frequency=1	major_base=T	major_cov=58/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/66
RA	738	.	NC_000913	1779583	0	G	T	bias_e_value=4.11881e-07	bias_p_value=8.8736e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.6	fisher_strand_p_value=2.56485e-15	frequency=3.152e-01	ks_quality_p_value=1	major_base=G	major_cov=66/47	major_frequency=6.848e-01	minor_base=T	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=3.152e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=66/47	total_cov=66/99
RA	739	.	NC_000913	1812509	0	G	T	bias_e_value=0.000207358	bias_p_value=4.46733e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.1	fisher_strand_p_value=1.58585e-12	frequency=2.302e-01	ks_quality_p_value=1	major_base=G	major_cov=70/37	major_frequency=7.698e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.302e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=70/37	total_cov=71/69
RA	740	.	NC_000913	1843127	0	G	A	consensus_score=281.5	frequency=1	major_base=A	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	741	.	NC_000913	1875677	0	C	T	bias_e_value=4234300	bias_p_value=0.912241	consensus_score=371.1	fisher_strand_p_value=0.61146	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/56	major_frequency=9.730e-01	minor_base=C	minor_cov=2/1	new_cov=52/56	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/1	total_cov=54/58
RA	742	.	NC_000913	1876063	0	C	T	consensus_score=385.5	frequency=1	major_base=T	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	743	.	NC_000913	1889453	0	C	T	bias_e_value=3834650	bias_p_value=0.82614	consensus_score=362.7	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/56	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=49/56	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/56
RA	744	.	NC_000913	1893564	0	C	T	consensus_score=319.7	frequency=1	major_base=T	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	745	.	NC_000913	1894839	0	T	C	consensus_score=347.4	frequency=1	major_base=C	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	746	.	NC_000913	1895353	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=325.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/38	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=55/38	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=56/39
RA	747	.	NC_000913	1995370	0	C	A	bias_e_value=4.78436	bias_p_value=1.03074e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.6	fisher_strand_p_value=5.83782e-08	frequency=2.784e-01	ks_quality_p_value=1	major_base=C	major_cov=31/39	major_frequency=7.216e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.784e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=31/39	total_cov=58/40
RA	748	.	NC_000913	2004071	0	C	T	consensus_score=353.7	frequency=1	major_base=T	major_cov=49/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/57
RA	749	.	NC_000913	2029236	0	T	C	consensus_score=329.7	frequency=1	major_base=C	major_cov=38/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/49
RA	750	.	NC_000913	2040433	0	C	A	consensus_score=290.8	frequency=1	major_base=A	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	751	.	NC_000913	2050238	0	T	C	bias_e_value=3707150	bias_p_value=0.79867	consensus_score=388.3	fisher_strand_p_value=0.436893	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/58	major_frequency=9.903e-01	minor_base=A	minor_cov=1/0	new_cov=44/58	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	752	.	NC_000913	2056599	0	T	C	bias_e_value=3768150	bias_p_value=0.811813	consensus_score=481.6	fisher_strand_p_value=0.453125	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=70/57	major_frequency=9.922e-01	minor_base=T	minor_cov=0/1	new_cov=70/57	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=71/58
RA	753	.	NC_000913	2073613	0	G	T	bias_e_value=0.259974	bias_p_value=5.60089e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.7	fisher_strand_p_value=2.70192e-09	frequency=3.452e-01	ks_quality_p_value=1	major_base=G	major_cov=34/21	major_frequency=6.548e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.452e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=34/21	total_cov=34/50
RA	754	.	NC_000913	2100672	0	T	C	consensus_score=314.3	frequency=1	major_base=C	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	755	.	NC_000913	2173363	0	C	.	bias_e_value=4638420	bias_p_value=0.999305	consensus_score=311.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962942	major_base=.	major_cov=33/32	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=33/32	polymorphism_frequency=9.848e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/0	total_cov=34/32
RA	756	.	NC_000913	2173364	0	C	.	bias_e_value=4641610	bias_p_value=0.999991	consensus_score=309.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995813	major_base=.	major_cov=33/32	major_frequency=9.848e-01	minor_base=T	minor_cov=1/0	new_cov=33/32	polymorphism_frequency=9.848e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	757	.	NC_000913	2188087	0	T	C	consensus_score=523.3	frequency=1	major_base=C	major_cov=73/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/66
RA	758	.	NC_000913	2269856	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=471.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=69/67	major_frequency=9.927e-01	minor_base=C	minor_cov=1/0	new_cov=69/67	polymorphism_frequency=9.927e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=70/67
RA	759	.	NC_000913	2288418	0	G	T	bias_e_value=8.22387e-06	bias_p_value=1.77175e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.3	fisher_strand_p_value=5.62295e-14	frequency=2.925e-01	ks_quality_p_value=1	major_base=G	major_cov=64/40	major_frequency=7.075e-01	minor_base=T	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.925e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=64/40	total_cov=64/83
RA	760	.	NC_000913	2316202	0	C	T	consensus_score=434.5	frequency=1	major_base=T	major_cov=59/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/67
RA	761	.	NC_000913	2384808	0	C	T	bias_e_value=3818130	bias_p_value=0.822581	consensus_score=369.0	fisher_strand_p_value=0.469565	frequency=1	ks_quality_p_value=0.994523	major_base=T	major_cov=61/53	major_frequency=9.913e-01	minor_base=C	minor_cov=0/1	new_cov=61/53	polymorphism_frequency=9.913e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=61/54
RA	762	.	NC_000913	2410419	0	G	A	consensus_score=266.1	frequency=1	major_base=A	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	763	.	NC_000913	2448152	0	C	T	consensus_score=260.0	frequency=1	major_base=T	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	764	.	NC_000913	2464335	0	C	T	consensus_score=354.0	frequency=1	major_base=T	major_cov=31/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/73
RA	765	.	NC_000913	2472282	0	C	T	consensus_score=235.8	frequency=1	major_base=T	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	766	.	NC_000913	2484827	0	C	T	consensus_score=457.6	frequency=1	major_base=T	major_cov=60/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/71
RA	767	.	NC_000913	2491112	0	C	T	consensus_score=325.1	frequency=1	major_base=T	major_cov=54/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/38
RA	768	.	NC_000913	2497429	0	C	T	consensus_score=327.4	frequency=1	major_base=T	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	769	.	NC_000913	2509277	0	T	C	consensus_score=383.6	frequency=1	major_base=C	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	770	.	NC_000913	2547929	0	C	T	consensus_score=253.9	frequency=1	major_base=T	major_cov=50/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/23
RA	771	.	NC_000913	2556466	0	C	T	bias_e_value=3785740	bias_p_value=0.815602	consensus_score=356.9	fisher_strand_p_value=0.457944	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=58/48	major_frequency=9.907e-01	minor_base=C	minor_cov=0/1	new_cov=58/48	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/49
RA	772	.	NC_000913	2561146	0	C	T	consensus_score=290.9	frequency=1	major_base=T	major_cov=33/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/56
RA	773	.	NC_000913	2574537	0	C	T	consensus_score=283.3	frequency=1	major_base=T	major_cov=54/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/28
RA	774	.	NC_000913	2631667	0	G	A	consensus_score=353.2	frequency=1	major_base=A	major_cov=44/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/58
RA	775	.	NC_000913	2675335	0	G	A	consensus_score=242.2	frequency=1	major_base=A	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	776	.	NC_000913	2764953	0	C	T	consensus_score=451.9	frequency=1	major_base=T	major_cov=52/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/79
RA	777	.	NC_000913	2767045	0	G	A	consensus_score=377.4	frequency=1	major_base=A	major_cov=46/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/63
RA	778	.	NC_000913	2817991	0	A	C	bias_e_value=2132750	bias_p_value=0.459481	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.9	fisher_strand_p_value=0.16344	frequency=2.604e-01	ks_quality_p_value=1	major_base=A	major_cov=30/41	major_frequency=7.396e-01	minor_base=C	minor_cov=15/10	new_cov=15/10	polymorphism_frequency=2.604e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=30/41	total_cov=45/51
RA	779	.	NC_000913	2818324	0	G	A	bias_e_value=3659380	bias_p_value=0.78838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.8	fisher_strand_p_value=0.424675	frequency=2.794e-01	ks_quality_p_value=1	major_base=G	major_cov=21/28	major_frequency=7.206e-01	minor_base=A	minor_cov=6/13	new_cov=6/13	polymorphism_frequency=2.794e-01	polymorphism_score=26.6	prediction=polymorphism	ref_cov=21/28	total_cov=27/41
RA	780	.	NC_000913	2990480	0	C	A	bias_e_value=0.0339844	bias_p_value=7.32162e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.9	fisher_strand_p_value=3.20254e-10	frequency=3.277e-01	ks_quality_p_value=1	major_base=C	major_cov=37/43	major_frequency=6.723e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=3.277e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=37/43	total_cov=76/43
RA	781	.	NC_000913	3024914	0	C	A	bias_e_value=0.724148	bias_p_value=1.56011e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.7	fisher_strand_p_value=7.93888e-09	frequency=2.268e-01	ks_quality_p_value=1	major_base=C	major_cov=26/49	major_frequency=7.732e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.268e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=26/49	total_cov=48/49
RA	782	.	NC_000913	3032307	0	C	T	bias_e_value=1.34158e-06	bias_p_value=2.8903e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.5	fisher_strand_p_value=8.65873e-15	frequency=3.028e-01	ks_quality_p_value=1	major_base=C	major_cov=19/57	major_frequency=6.972e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.028e-01	polymorphism_score=33.9	prediction=polymorphism	ref_cov=19/57	total_cov=53/57
RA	783	.	NC_000913	3054886	0	G	T	bias_e_value=1.30547	bias_p_value=2.81252e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.9	fisher_strand_p_value=1.47794e-08	frequency=3.111e-01	ks_quality_p_value=1	major_base=G	major_cov=26/36	major_frequency=6.889e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.111e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=26/36	total_cov=54/36
RA	784	.	NC_000913	3054894	0	G	T	bias_e_value=0.0423761	bias_p_value=9.12952e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.7	fisher_strand_p_value=4.03406e-10	frequency=3.500e-01	ks_quality_p_value=1	major_base=G	major_cov=17/35	major_frequency=6.500e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.500e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=17/35	total_cov=46/35
RA	785	.	NC_000913	3055907	0	G	A	bias_e_value=3781940	bias_p_value=0.814783	consensus_score=404.5	fisher_strand_p_value=0.456897	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/63	major_frequency=9.914e-01	minor_base=C	minor_cov=1/0	new_cov=52/63	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/63
RA	786	.	NC_000913	3088010	0	C	T	bias_e_value=3879680	bias_p_value=0.835839	consensus_score=445.0	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/68	major_frequency=9.924e-01	minor_base=C	minor_cov=1/0	new_cov=63/68	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=64/68
RA	787	.	NC_000913	3088011	0	C	T	consensus_score=444.4	frequency=1	major_base=T	major_cov=64/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/68
RA	788	.	NC_000913	3143279	0	G	A	consensus_score=307.5	frequency=1	major_base=A	major_cov=54/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/37
RA	789	.	NC_000913	3191376	0	G	T	bias_e_value=30.176	bias_p_value=6.50113e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.1	fisher_strand_p_value=4.14164e-07	frequency=2.385e-01	ks_quality_p_value=1	major_base=G	major_cov=44/55	major_frequency=7.615e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.385e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=44/55	total_cov=44/86
RA	790	.	NC_000913	3195117	0	G	A	bias_e_value=4631400	bias_p_value=0.997791	consensus_score=264.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.934275	major_base=A	major_cov=44/52	major_frequency=8.807e-01	minor_base=G	minor_cov=6/7	new_cov=44/52	polymorphism_frequency=8.807e-01	polymorphism_score=24.4	prediction=consensus	ref_cov=6/7	total_cov=50/59
RA	791	.	NC_000913	3195432	0	G	A	bias_e_value=1872800	bias_p_value=0.403476	consensus_score=345.1	fisher_strand_p_value=0.134073	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=59/47	major_frequency=9.636e-01	minor_base=C	minor_cov=4/0	new_cov=59/47	polymorphism_frequency=9.636e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/47
RA	792	.	NC_000913	3202387	0	C	T	consensus_score=216.5	frequency=1	major_base=T	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	793	.	NC_000913	3205054	0	G	A	consensus_score=273.4	frequency=1	major_base=A	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	794	.	NC_000913	3259756	0	G	A	consensus_score=298.3	frequency=1	major_base=A	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	795	.	NC_000913	3262529	0	G	A	consensus_score=449.6	frequency=1	major_base=A	major_cov=69/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/61
RA	796	.	NC_000913	3265043	0	G	A	consensus_score=325.6	frequency=1	major_base=A	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	797	.	NC_000913	3267794	0	G	A	consensus_score=488.9	frequency=1	major_base=A	major_cov=73/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/67
RA	798	.	NC_000913	3288834	0	G	T	bias_e_value=0.135439	bias_p_value=2.9179e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.5	fisher_strand_p_value=1.36262e-09	frequency=2.160e-01	ks_quality_p_value=1	major_base=G	major_cov=59/39	major_frequency=7.840e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.160e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=59/39	total_cov=59/66
RA	799	.	NC_000913	3289167	0	G	A	consensus_score=390.8	frequency=1	major_base=A	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	800	.	NC_000913	3291761	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=390.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=69/49	major_frequency=9.916e-01	minor_base=C	minor_cov=1/0	new_cov=69/49	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/49
RA	801	.	NC_000913	3311967	0	G	A	bias_e_value=2122840	bias_p_value=0.457346	consensus_score=361.2	fisher_strand_p_value=0.162264	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/63	major_frequency=9.811e-01	minor_base=C	minor_cov=2/0	new_cov=41/63	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/63
RA	802	.	NC_000913	3314130	0	G	A	consensus_score=294.5	frequency=1	major_base=A	major_cov=32/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/55
RA	803	.	NC_000913	3324879	0	G	A	consensus_score=289.5	frequency=1	major_base=A	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	804	.	NC_000913	3336411	0	G	A	consensus_score=334.7	frequency=1	major_base=A	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	805	.	NC_000913	3336412	0	A	T	consensus_score=338.5	frequency=1	major_base=T	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	806	.	NC_000913	3337832	0	G	A	consensus_score=336.5	frequency=1	major_base=A	major_cov=55/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/45
RA	807	.	NC_000913	3339982	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=385.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=85/30	major_frequency=9.914e-01	minor_base=C	minor_cov=1/0	new_cov=85/30	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/30
RA	808	.	NC_000913	3343250	0	G	A	consensus_score=443.3	frequency=1	major_base=A	major_cov=72/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/53
RA	809	.	NC_000913	3346302	0	G	A	bias_e_value=3644910	bias_p_value=0.785262	consensus_score=393.4	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/66	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=47/66	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/66
RA	810	.	NC_000913	3347092	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=270.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/40	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=38/40	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/41
RA	811	.	NC_000913	3347370	0	G	A	consensus_score=338.0	frequency=1	major_base=A	major_cov=49/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
RA	812	.	NC_000913	3355138	0	G	A	bias_e_value=3441000	bias_p_value=0.741331	consensus_score=283.5	fisher_strand_p_value=0.373494	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/52	major_frequency=9.880e-01	minor_base=C	minor_cov=1/0	new_cov=30/52	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/52
RA	813	.	NC_000913	3359010	0	G	A	consensus_score=292.9	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	814	.	NC_000913	3359916	0	G	A	consensus_score=195.6	frequency=1	major_base=A	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	815	.	NC_000913	3359937	0	G	A	consensus_score=201.7	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	816	.	NC_000913	3377162	0	G	A	consensus_score=285.9	frequency=1	major_base=A	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	817	.	NC_000913	3379594	0	G	A	consensus_score=337.8	frequency=1	major_base=A	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	818	.	NC_000913	3381442	0	G	A	consensus_score=299.4	frequency=1	major_base=A	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	819	.	NC_000913	3388041	0	T	G	consensus_score=297.8	frequency=1	major_base=G	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	820	.	NC_000913	3390213	0	G	A	consensus_score=388.2	frequency=1	major_base=A	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	821	.	NC_000913	3399260	0	G	A	consensus_score=223.7	frequency=1	major_base=A	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	822	.	NC_000913	3420842	0	G	A	consensus_score=282.6	frequency=1	major_base=A	major_cov=48/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/34
RA	823	.	NC_000913	3424524	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=112.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/35	major_frequency=9.833e-01	minor_base=G	minor_cov=0/1	new_cov=24/35	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=24/36
RA	824	.	NC_000913	3428727	0	G	A	consensus_score=200.6	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	825	.	NC_000913	3428825	0	G	A	consensus_score=245.4	frequency=1	major_base=A	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	826	.	NC_000913	3430588	0	G	A	consensus_score=350.3	frequency=1	major_base=A	major_cov=60/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/44
RA	827	.	NC_000913	3431506	0	G	A	consensus_score=356.2	frequency=1	major_base=A	major_cov=37/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/64
RA	828	.	NC_000913	3433680	0	C	A	bias_e_value=2.98455	bias_p_value=6.42993e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.5	fisher_strand_p_value=3.54147e-08	frequency=2.605e-01	ks_quality_p_value=1	major_base=C	major_cov=43/45	major_frequency=7.395e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.605e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=43/45	total_cov=74/46
RA	829	.	NC_000913	3436419	0	G	A	consensus_score=297.6	frequency=1	major_base=A	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	830	.	NC_000913	3436697	0	G	A	consensus_score=267.9	frequency=1	major_base=A	major_cov=52/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/28
RA	831	.	NC_000913	3439003	0	C	T	consensus_score=424.8	frequency=1	major_base=T	major_cov=71/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/51
RA	832	.	NC_000913	3450966	0	G	A	bias_e_value=4641630	bias_p_value=0.999994	consensus_score=234.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996673	major_base=A	major_cov=45/28	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=45/28	polymorphism_frequency=9.865e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=46/28
RA	833	.	NC_000913	3466533	0	G	A	consensus_score=463.7	frequency=1	major_base=A	major_cov=61/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/73
RA	834	.	NC_000913	3476485	0	G	A	bias_e_value=3760250	bias_p_value=0.81011	consensus_score=335.9	fisher_strand_p_value=0.45098	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=56/45	major_frequency=9.902e-01	minor_base=G	minor_cov=0/1	new_cov=56/45	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=56/46
RA	835	.	NC_000913	3477781	0	C	T	consensus_score=306.9	frequency=1	major_base=T	major_cov=35/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/57
RA	836	.	NC_000913	3479373	0	C	T	bias_e_value=3919240	bias_p_value=0.844363	consensus_score=350.6	fisher_strand_p_value=0.496826	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/53	major_frequency=9.808e-01	minor_base=G	minor_cov=0/2	new_cov=49/53	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	837	.	NC_000913	3480842	0	C	T	consensus_score=325.7	frequency=1	major_base=T	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	838	.	NC_000913	3487784	0	C	T	consensus_score=222.8	frequency=1	major_base=T	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	839	.	NC_000913	3491210	0	C	T	bias_e_value=3871260	bias_p_value=0.834026	consensus_score=274.4	fisher_strand_p_value=0.482353	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/41
RA	840	.	NC_000913	3500982	0	C	T	consensus_score=341.8	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	841	.	NC_000913	3505751	0	C	T	consensus_score=296.3	frequency=1	major_base=T	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	842	.	NC_000913	3509233	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=377.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/54	major_frequency=9.908e-01	minor_base=C	minor_cov=0/1	new_cov=54/54	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/55
RA	843	.	NC_000913	3560455	1	.	G	bias_e_value=4639800	bias_p_value=0.999601	consensus_score=364.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971888	major_base=G	major_cov=50/50	major_frequency=9.901e-01	minor_base=A	minor_cov=1/0	new_cov=50/50	polymorphism_frequency=9.901e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=51/50
RA	844	.	NC_000913	3621267	0	T	G	bias_e_value=4619220	bias_p_value=0.995168	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.2	fisher_strand_p_value=1	frequency=4.118e-01	ks_quality_p_value=0.903318	major_base=T	major_cov=13/7	major_frequency=5.882e-01	minor_base=G	minor_cov=10/4	new_cov=10/4	polymorphism_frequency=4.118e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=13/7	total_cov=23/11
RA	845	.	NC_000913	3667023	0	C	T	consensus_score=90.2	frequency=1	major_base=T	major_cov=22/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	846	.	NC_000913	3682515	0	C	T	consensus_score=376.0	frequency=1	major_base=T	major_cov=58/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/52
RA	847	.	NC_000913	3705875	0	G	A	consensus_score=244.3	frequency=1	major_base=A	major_cov=51/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/23
RA	848	.	NC_000913	3707947	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=443.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=90/41	major_frequency=9.924e-01	minor_base=G	minor_cov=1/0	new_cov=90/41	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/41
RA	849	.	NC_000913	3720801	0	C	T	consensus_score=302.5	frequency=1	major_base=T	major_cov=53/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/34
RA	850	.	NC_000913	3725152	0	G	A	consensus_score=397.5	frequency=1	major_base=A	major_cov=51/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/65
RA	851	.	NC_000913	3725176	0	T	G	bias_e_value=3853230	bias_p_value=0.830141	consensus_score=393.4	fisher_strand_p_value=0.477064	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=51/57	major_frequency=9.908e-01	minor_base=A	minor_cov=1/0	new_cov=51/57	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/57
RA	852	.	NC_000913	3741871	0	G	T	bias_e_value=0.00379309	bias_p_value=8.17185e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.9	fisher_strand_p_value=3.24924e-11	frequency=3.261e-01	ks_quality_p_value=1	major_base=G	major_cov=42/20	major_frequency=6.739e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.261e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=42/20	total_cov=42/50
RA	853	.	NC_000913	3746493	0	G	A	consensus_score=242.2	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	854	.	NC_000913	3747484	0	A	T	bias_e_value=3592470	bias_p_value=0.773965	consensus_score=317.3	fisher_strand_p_value=0.408602	frequency=1	ks_quality_p_value=0.999065	major_base=T	major_cov=55/37	major_frequency=9.892e-01	minor_base=C	minor_cov=0/1	new_cov=55/37	polymorphism_frequency=9.892e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=55/38
RA	855	.	NC_000913	3768435	0	C	A	bias_e_value=0.000318628	bias_p_value=6.86453e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.2	fisher_strand_p_value=2.47599e-12	frequency=2.349e-01	ks_quality_p_value=1	major_base=C	major_cov=54/73	major_frequency=7.651e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.349e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=54/73	total_cov=93/73
RA	856	.	NC_000913	3771979	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=363.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/54	major_frequency=9.906e-01	minor_base=G	minor_cov=0/1	new_cov=51/54	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/55
RA	857	.	NC_000913	3780988	0	G	A	consensus_score=218.5	frequency=1	major_base=A	major_cov=29/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/36
RA	858	.	NC_000913	3785167	0	G	A	consensus_score=328.1	frequency=1	major_base=A	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	859	.	NC_000913	3787826	0	G	A	consensus_score=194.1	frequency=1	major_base=A	major_cov=38/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/22
RA	860	.	NC_000913	3792096	0	G	A	consensus_score=327.9	frequency=1	major_base=A	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	861	.	NC_000913	3806801	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=309.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/63	major_frequency=9.894e-01	minor_base=G	minor_cov=0/1	new_cov=30/63	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/64
RA	862	.	NC_000913	3811123	0	G	A	consensus_score=460.6	frequency=1	major_base=A	major_cov=75/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/61
RA	863	.	NC_000913	3815416	0	C	T	consensus_score=253.3	frequency=1	major_base=T	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	864	.	NC_000913	3815883	1	.	C	bias_e_value=2731460	bias_p_value=0.588467	consensus_score=357.6	fisher_strand_p_value=0.244201	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=48/46	major_frequency=9.691e-01	minor_base=A	minor_cov=3/0	new_cov=48/46	polymorphism_frequency=9.691e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=52/46
RA	865	.	NC_000913	3817555	0	C	T	bias_e_value=4639530	bias_p_value=0.999543	consensus_score=441.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969931	major_base=T	major_cov=57/72	major_frequency=9.923e-01	minor_base=C	minor_cov=0/1	new_cov=57/72	polymorphism_frequency=9.923e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=57/74
RA	866	.	NC_000913	3818527	0	C	T	consensus_score=400.5	frequency=1	major_base=T	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	867	.	NC_000913	3823162	0	C	T	consensus_score=344.6	frequency=1	major_base=T	major_cov=41/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/62
RA	868	.	NC_000913	3829611	0	G	A	consensus_score=282.2	frequency=1	major_base=A	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	869	.	NC_000913	3833353	0	G	A	consensus_score=273.7	frequency=1	major_base=A	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	870	.	NC_000913	3839315	0	G	A	consensus_score=353.4	frequency=1	major_base=A	major_cov=42/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	871	.	NC_000913	3839410	0	G	A	consensus_score=351.1	frequency=1	major_base=A	major_cov=52/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/52
RA	872	.	NC_000913	3843428	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=386.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/69	major_frequency=9.911e-01	minor_base=G	minor_cov=0/1	new_cov=42/69	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/70
RA	873	.	NC_000913	3844489	0	G	A	consensus_score=240.3	frequency=1	major_base=A	major_cov=46/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/23
RA	874	.	NC_000913	3853196	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=310.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/45	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=45/45	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	875	.	NC_000913	3867864	0	G	A	bias_e_value=3850220	bias_p_value=0.829494	consensus_score=355.4	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/55	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=49/55	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/55
RA	876	.	NC_000913	3869637	0	C	A	consensus_score=349.8	frequency=1	major_base=A	major_cov=46/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/55
RA	877	.	NC_000913	3870078	0	G	A	bias_e_value=3791220	bias_p_value=0.816783	consensus_score=381.4	fisher_strand_p_value=0.459459	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/60	major_frequency=9.910e-01	minor_base=G	minor_cov=1/0	new_cov=50/60	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/60
RA	878	.	NC_000913	3872137	0	G	A	consensus_score=376.6	frequency=1	major_base=A	major_cov=57/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/49
RA	879	.	NC_000913	3878536	0	G	A	consensus_score=277.3	frequency=1	major_base=A	major_cov=29/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/51
RA	880	.	NC_000913	3889459	0	G	A	consensus_score=232.2	frequency=1	major_base=A	major_cov=23/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/44
RA	881	.	NC_000913	3890923	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=384.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=58/52	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=58/52	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/52
RA	882	.	NC_000913	3894347	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=229.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/34	major_frequency=9.855e-01	minor_base=G	minor_cov=1/0	new_cov=34/34	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/34
RA	883	.	NC_000913	3903658	0	G	A	consensus_score=364.2	frequency=1	major_base=A	major_cov=47/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/57
RA	884	.	NC_000913	3910444	0	C	T	consensus_score=317.9	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	885	.	NC_000913	3911379	0	C	T	bias_e_value=3888780	bias_p_value=0.837801	consensus_score=347.5	fisher_strand_p_value=0.495146	frequency=1	ks_quality_p_value=0.984699	major_base=T	major_cov=52/50	major_frequency=9.903e-01	minor_base=C	minor_cov=0/1	new_cov=52/50	polymorphism_frequency=9.903e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=52/51
RA	886	.	NC_000913	3914907	0	G	A	consensus_score=274.8	frequency=1	major_base=A	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	887	.	NC_000913	3916100	0	G	A	consensus_score=308.0	frequency=1	major_base=A	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	888	.	NC_000913	3917093	0	G	A	consensus_score=261.5	frequency=1	major_base=A	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	889	.	NC_000913	3920136	0	G	A	consensus_score=355.3	frequency=1	major_base=A	major_cov=58/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/46
RA	890	.	NC_000913	3954459	0	C	T	consensus_score=225.8	frequency=1	major_base=T	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	891	.	NC_000913	3961662	0	G	T	consensus_score=281.1	frequency=1	major_base=T	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	892	.	NC_000913	3965174	0	G	A	bias_e_value=3907240	bias_p_value=0.841779	consensus_score=247.0	fisher_strand_p_value=0.493151	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/37	major_frequency=9.730e-01	minor_base=C	minor_cov=2/0	new_cov=35/37	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	893	.	NC_000913	3968683	0	G	A	consensus_score=319.6	frequency=1	major_base=A	major_cov=42/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	894	.	NC_000913	3969748	0	T	C	consensus_score=251.0	frequency=1	major_base=C	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	895	.	NC_000913	3993531	0	T	C	consensus_score=323.1	frequency=1	major_base=C	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	896	.	NC_000913	3997261	0	G	A	consensus_score=241.9	frequency=1	major_base=A	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	897	.	NC_000913	4005738	0	G	A	consensus_score=213.0	frequency=1	major_base=A	major_cov=47/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/21
RA	898	.	NC_000913	4009250	0	G	A	consensus_score=286.5	frequency=1	major_base=A	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	899	.	NC_000913	4009552	0	G	A	consensus_score=285.7	frequency=1	major_base=A	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	900	.	NC_000913	4015364	0	T	C	bias_e_value=4029510	bias_p_value=0.86812	consensus_score=275.3	fisher_strand_p_value=0.532973	frequency=1	ks_quality_p_value=0.99927	major_base=C	major_cov=27/46	major_frequency=9.733e-01	minor_base=A	minor_cov=0/2	new_cov=27/46	polymorphism_frequency=9.733e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=27/48
RA	901	.	NC_000913	4017606	0	G	A	consensus_score=286.7	frequency=1	major_base=A	major_cov=47/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	902	.	NC_000913	4020530	0	G	A	consensus_score=321.3	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	903	.	NC_000913	4022421	0	G	A	consensus_score=274.5	frequency=1	major_base=A	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	904	.	NC_000913	4025213	0	G	A	consensus_score=359.9	frequency=1	major_base=A	major_cov=61/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/44
RA	905	.	NC_000913	4027752	0	G	A	consensus_score=209.5	frequency=1	major_base=A	major_cov=43/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/21
RA	906	.	NC_000913	4031591	0	G	A	consensus_score=253.6	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	907	.	NC_000913	4033621	0	G	A	consensus_score=324.1	frequency=1	major_base=A	major_cov=61/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/33
RA	908	.	NC_000913	4037278	0	G	A	consensus_score=164.7	frequency=1	major_base=A	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	909	.	NC_000913	4064842	0	C	T	bias_e_value=3926340	bias_p_value=0.845893	consensus_score=457.6	fisher_strand_p_value=0.49902	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=71/63	major_frequency=9.853e-01	minor_base=C	minor_cov=2/0	new_cov=71/63	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=73/64
RA	910	.	NC_000913	4069091	0	C	T	consensus_score=348.5	frequency=1	major_base=T	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	911	.	NC_000913	4084903	0	T	G	bias_e_value=2939060	bias_p_value=0.633193	consensus_score=301.7	fisher_strand_p_value=0.277466	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/50	major_frequency=9.655e-01	minor_base=T	minor_cov=0/3	new_cov=34/50	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/3	total_cov=34/53
RA	912	.	NC_000913	4090609	0	A	G	consensus_score=288.1	frequency=1	major_base=G	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	913	.	NC_000913	4092703	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=392.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=56/51	major_frequency=9.907e-01	minor_base=A	minor_cov=1/0	new_cov=56/51	polymorphism_frequency=9.907e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=57/51
RA	914	.	NC_000913	4111379	0	C	T	consensus_score=299.0	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	915	.	NC_000913	4112203	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=374.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/64	major_frequency=9.908e-01	minor_base=G	minor_cov=0/1	new_cov=44/64	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/65
RA	916	.	NC_000913	4113851	0	G	A	consensus_score=272.7	frequency=1	major_base=A	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	917	.	NC_000913	4129740	0	G	T	bias_e_value=33.2747	bias_p_value=7.16872e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.3	fisher_strand_p_value=4.59752e-07	frequency=3.182e-01	ks_quality_p_value=1	major_base=G	major_cov=30/30	major_frequency=6.818e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.182e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=30/30	total_cov=30/58
RA	918	.	NC_000913	4143377	0	C	T	consensus_score=286.8	frequency=1	major_base=T	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	919	.	NC_000913	4161248	0	G	T	consensus_score=278.3	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	920	.	NC_000913	4164123	0	C	G	consensus_score=331.4	frequency=1	major_base=G	major_cov=56/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/34
RA	921	.	NC_000913	4193850	0	G	A	consensus_score=159.2	frequency=1	major_base=A	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	922	.	NC_000913	4193996	0	T	G	consensus_score=218.9	frequency=1	major_base=G	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	923	.	NC_000913	4215347	0	T	A	consensus_score=378.3	frequency=1	major_base=A	major_cov=59/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/53
RA	924	.	NC_000913	4223638	0	T	C	bias_e_value=3832750	bias_p_value=0.82573	consensus_score=368.5	fisher_strand_p_value=0.471154	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=55/48	major_frequency=9.904e-01	minor_base=T	minor_cov=0/1	new_cov=55/48	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/49
RA	925	.	NC_000913	4238016	0	G	A	consensus_score=273.6	frequency=1	major_base=A	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	926	.	NC_000913	4256705	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=475.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/74	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=63/74	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/75
RA	927	.	NC_000913	4256736	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=431.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/64	major_frequency=9.922e-01	minor_base=G	minor_cov=0/1	new_cov=63/64	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/65
RA	928	.	NC_000913	4257546	0	C	T	consensus_score=344.3	frequency=1	major_base=T	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	929	.	NC_000913	4269737	0	C	T	consensus_score=338.1	frequency=1	major_base=T	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	930	.	NC_000913	4269904	0	C	T	consensus_score=382.5	frequency=1	major_base=T	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	931	.	NC_000913	4293781	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=294.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/54	major_frequency=9.778e-01	minor_base=G	minor_cov=1/1	new_cov=34/54	polymorphism_frequency=9.778e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/1	total_cov=35/55
RA	932	.	NC_000913	4293782	0	C	T	consensus_score=313.0	frequency=1	major_base=T	major_cov=35/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/55
RA	933	.	NC_000913	4296191	0	A	C	bias_e_value=737086	bias_p_value=0.158798	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.5	fisher_strand_p_value=0.0390774	frequency=2.105e-01	ks_quality_p_value=0.945406	major_base=A	major_cov=9/21	major_frequency=7.895e-01	minor_base=C	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=2.105e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=9/21	total_cov=15/23
RA	934	.	NC_000913	4296268	0	T	C	bias_e_value=1157060	bias_p_value=0.249277	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.8	fisher_strand_p_value=0.071328	frequency=2.105e-01	ks_quality_p_value=0.945406	major_base=T	major_cov=25/5	major_frequency=7.895e-01	minor_base=C	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.105e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=25/5	total_cov=29/9
RA	935	.	NC_000913	4296380	1	.	C	bias_e_value=3318690	bias_p_value=0.71498	consensus_score=273.2	fisher_strand_p_value=0.350649	frequency=1	ks_quality_p_value=0.991492	major_base=C	major_cov=50/26	major_frequency=9.870e-01	minor_base=.	minor_cov=0/1	new_cov=50/26	polymorphism_frequency=9.870e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=50/27
RA	936	.	NC_000913	4296380	2	.	G	bias_e_value=3304710	bias_p_value=0.711968	consensus_score=270.5	fisher_strand_p_value=0.350649	frequency=1	ks_quality_p_value=0.983393	major_base=G	major_cov=50/26	major_frequency=9.870e-01	minor_base=.	minor_cov=0/1	new_cov=50/26	polymorphism_frequency=9.870e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/1	total_cov=50/27
RA	937	.	NC_000913	4325644	0	C	T	consensus_score=283.2	frequency=1	major_base=T	major_cov=35/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/49
RA	938	.	NC_000913	4385260	0	C	T	consensus_score=293.7	frequency=1	major_base=T	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	939	.	NC_000913	4386666	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=299.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/42	major_frequency=9.783e-01	minor_base=G	minor_cov=1/1	new_cov=48/42	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	940	.	NC_000913	4389369	0	A	G	bias_e_value=2049510	bias_p_value=0.441547	consensus_score=407.9	fisher_strand_p_value=0.153703	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=69/43	major_frequency=9.825e-01	minor_base=A	minor_cov=0/2	new_cov=69/43	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=69/45
RA	941	.	NC_000913	4392997	0	G	A	consensus_score=459.0	frequency=1	major_base=A	major_cov=53/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/81
RA	942	.	NC_000913	4393552	0	G	A	consensus_score=286.7	frequency=1	major_base=A	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	943	.	NC_000913	4396373	0	C	T	consensus_score=234.4	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	944	.	NC_000913	4396772	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=214.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/30	major_frequency=9.833e-01	minor_base=T	minor_cov=0/1	new_cov=29/30	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/32
RA	945	.	NC_000913	4425688	0	C	A	consensus_score=304.0	frequency=1	major_base=A	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	946	.	NC_000913	4425696	0	C	A	consensus_score=312.2	frequency=1	major_base=A	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	947	.	NC_000913	4442405	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=401.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/68	major_frequency=9.917e-01	minor_base=G	minor_cov=0/1	new_cov=52/68	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/69
RA	948	.	NC_000913	4453213	0	G	A	bias_e_value=3795600	bias_p_value=0.817726	consensus_score=293.1	fisher_strand_p_value=0.460674	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/40	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=48/40	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/41
RA	949	.	NC_000913	4456339	0	C	T	consensus_score=346.7	frequency=1	major_base=T	major_cov=56/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/47
RA	950	.	NC_000913	4457569	0	C	T	consensus_score=384.6	frequency=1	major_base=T	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	951	.	NC_000913	4457803	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=458.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=65/65	major_frequency=9.924e-01	minor_base=C	minor_cov=1/0	new_cov=65/65	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	952	.	NC_000913	4457874	0	C	T	bias_e_value=3701720	bias_p_value=0.797501	consensus_score=423.8	fisher_strand_p_value=0.435484	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=70/53	major_frequency=9.919e-01	minor_base=C	minor_cov=0/1	new_cov=70/53	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=70/54
RA	953	.	NC_000913	4460754	0	C	T	consensus_score=315.7	frequency=1	major_base=T	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	954	.	NC_000913	4461891	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=298.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/53	major_frequency=9.888e-01	minor_base=C	minor_cov=0/1	new_cov=35/53	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/54
RA	955	.	NC_000913	4462277	0	C	T	bias_e_value=3850220	bias_p_value=0.829494	consensus_score=213.5	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/29	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	956	.	NC_000913	4462776	0	C	T	consensus_score=344.1	frequency=1	major_base=T	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	957	.	NC_000913	4462941	0	C	T	consensus_score=350.2	frequency=1	major_base=T	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	958	.	NC_000913	4463138	0	C	T	consensus_score=274.8	frequency=1	major_base=T	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	959	.	NC_000913	4471404	0	C	T	consensus_score=367.0	frequency=1	major_base=T	major_cov=66/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/40
RA	960	.	NC_000913	4486407	0	C	T	consensus_score=368.6	frequency=1	major_base=T	major_cov=39/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/66
RA	961	.	NC_000913	4494432	0	C	T	bias_e_value=3913130	bias_p_value=0.843047	consensus_score=324.8	fisher_strand_p_value=0.494949	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/48	major_frequency=9.798e-01	minor_base=C	minor_cov=0/2	new_cov=49/48	polymorphism_frequency=9.798e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/2	total_cov=49/50
RA	962	.	NC_000913	4495621	0	C	T	consensus_score=188.6	frequency=1	major_base=T	major_cov=23/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/32
RA	963	.	NC_000913	4510238	0	T	G	bias_e_value=35723.8	bias_p_value=0.00769636	consensus_score=424.3	fisher_strand_p_value=0.000969466	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=71/47	major_frequency=9.365e-01	minor_base=T	minor_cov=0/8	new_cov=71/47	polymorphism_frequency=9.365e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/8	total_cov=71/55
RA	964	.	NC_000913	4512344	0	C	T	consensus_score=216.6	frequency=1	major_base=T	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	965	.	NC_000913	4513529	0	C	T	consensus_score=161.1	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	966	.	NC_000913	4517591	0	C	T	consensus_score=146.1	frequency=1	major_base=T	major_cov=16/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/27
RA	967	.	NC_000913	4518930	0	T	C	consensus_score=263.9	frequency=1	major_base=C	major_cov=44/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/26
RA	968	.	NC_000913	4521584	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=367.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/55	major_frequency=9.908e-01	minor_base=C	minor_cov=0/1	new_cov=53/55	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/56
RA	969	.	NC_000913	4523866	0	C	T	consensus_score=296.8	frequency=1	major_base=T	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	970	.	NC_000913	4526856	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=306.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/56	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=34/56	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/57
RA	971	.	NC_000913	4532409	0	T	G	bias_e_value=4641130	bias_p_value=0.999887	consensus_score=301.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98499	major_base=G	major_cov=42/38	major_frequency=9.877e-01	minor_base=T	minor_cov=1/0	new_cov=42/38	polymorphism_frequency=9.877e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=43/38
RA	972	.	NC_000913	4546601	0	C	T	bias_e_value=2734830	bias_p_value=0.589194	consensus_score=374.9	fisher_strand_p_value=0.244717	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/53	major_frequency=9.730e-01	minor_base=C	minor_cov=3/0	new_cov=55/53	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=3/0	total_cov=58/53
RA	973	.	NC_000913	4549907	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=304.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/37	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=53/37	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/37
RA	974	.	NC_000913	4618086	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=213.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/41	major_frequency=9.841e-01	minor_base=C	minor_cov=0/1	new_cov=21/41	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/42
RA	975	.	NC_000913	4618623	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=288.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/34	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=51/34	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/34
RA	976	.	NC_000913	4631521	0	G	A	consensus_score=229.3	frequency=1	major_base=A	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	977	.	NC_000913	4636925	0	G	C	consensus_score=287.1	frequency=1	major_base=C	major_cov=45/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/31
RA	978	.	NC_000913	4638240	0	G	A	consensus_score=376.6	frequency=1	major_base=A	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	979	.	NC_000913	4638495	0	G	A	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=310.4	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/52	major_frequency=9.890e-01	minor_base=G	minor_cov=1/0	new_cov=38/52	polymorphism_frequency=9.890e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=1/0	total_cov=39/52
MC	980	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=113	right_inside_cov=1	right_outside_cov=113
MC	981	.	NC_000913	730332	731641	233	81	left_inside_cov=29	left_outside_cov=32	right_inside_cov=29	right_outside_cov=36
MC	982	.	NC_000913	1196320	1211460	0	0	left_inside_cov=31	left_outside_cov=32	right_inside_cov=31	right_outside_cov=37
MC	983	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=143	right_inside_cov=0	right_outside_cov=144
MC	984	.	NC_000913	1978495	1979270	0	766	left_inside_cov=0	left_outside_cov=100	right_inside_cov=0	right_outside_cov=133
MC	985	.	NC_000913	3423871	3424455	361	216	left_inside_cov=31	left_outside_cov=32	right_inside_cov=31	right_outside_cov=32
MC	986	.	NC_000913	3708467	3708634	0	0	left_inside_cov=0	left_outside_cov=36	right_inside_cov=19	right_outside_cov=55
MC	987	.	NC_000913	4037971	4039209	714	486	left_inside_cov=31	left_outside_cov=32	right_inside_cov=31	right_outside_cov=32
JC	988	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=63	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=294	max_left_minus=294	max_left_plus=260	max_min_left=148	max_min_left_minus=147	max_min_left_plus=148	max_min_right=148	max_min_right_minus=139	max_min_right_plus=148	max_pos_hash_score=590	max_right=296	max_right_minus=287	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.25	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=116
JC	989	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=48	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=282	max_left_minus=278	max_left_plus=282	max_min_left=143	max_min_left_minus=105	max_min_left_plus=143	max_min_right=144	max_min_right_minus=140	max_min_right_plus=144	max_pos_hash_score=574	max_right=283	max_right_minus=283	max_right_plus=267	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	990	.	NC_000913	462665	-1	NC_000913	463098	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.089e-02	junction_possible_overlap_registers=284	key=NC_000913__462665__-1__NC_000913__463088__1__10____300__300__0__0	max_left=121	max_left_minus=121	max_left_plus=89	max_min_left=33	max_min_left_minus=33	max_min_left_plus=33	max_min_right=79	max_min_right_minus=79	max_min_right_plus=79	max_pos_hash_score=570	max_right=129	max_right_minus=129	max_right_plus=129	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.089e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	991	.	NC_000913	696506	-1	NC_000913	697057	1	-45	alignment_overlap=-45	coverage_minus=3	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=9.644e-02	junction_possible_overlap_registers=249	key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0	max_left=238	max_left_minus=71	max_left_plus=238	max_min_left=71	max_min_left_minus=71	max_min_left_plus=64	max_min_right=68	max_min_right_minus=0	max_min_right_plus=68	max_pos_hash_score=500	max_right=194	max_right_minus=184	max_right_plus=194	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=9.644e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT
JC	992	.	NC_000913	696578	-1	NC_000913	696902	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.500e-02	junction_possible_overlap_registers=284	key=NC_000913__696578__-1__NC_000913__696892__1__10____300__300__0__0	max_left=264	max_left_minus=264	max_left_plus=103	max_min_left=103	max_min_left_minus=0	max_min_left_plus=103	max_min_right=132	max_min_right_minus=132	max_min_right_plus=0	max_pos_hash_score=570	max_right=187	max_right_minus=132	max_right_plus=187	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.500e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=4
JC	993	.	NC_000913	696741	-1	NC_000913	697135	1	0	alignment_overlap=78	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.249e-01	junction_possible_overlap_registers=216	key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0	max_left=154	max_left_minus=154	max_left_plus=109	max_min_left=109	max_min_left_minus=21	max_min_left_plus=109	max_min_right=106	max_min_right_minus=106	max_min_right_plus=0	max_pos_hash_score=434	max_right=116	max_right_minus=106	max_right_plus=116	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.10	new_junction_read_count=7	polymorphism_frequency=1.249e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=78	side_1_possible_overlap_registers=294	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=7
JC	994	.	NC_000913	730011	-1	NC_000913	3620131	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.115e-01	junction_possible_overlap_registers=284	key=NC_000913__730011__-1__NC_000913__3620121__1__10____300__300__0__1	max_left=91	max_left_minus=91	max_left_plus=79	max_min_left=91	max_min_left_minus=91	max_min_left_plus=79	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=134	max_right_minus=134	max_right_plus=134	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.115e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.35	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	995	.	NC_000913	780629	-1	NC_000913	780919	1	0	alignment_overlap=76	coverage_minus=10	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=2.687e-01	junction_possible_overlap_registers=218	key=NC_000913__780629__-1__NC_000913__780843__1__76____300__300__0__0	max_left=168	max_left_minus=168	max_left_plus=155	max_min_left=88	max_min_left_minus=88	max_min_left_plus=76	max_min_right=88	max_min_right_minus=88	max_min_right_plus=27	max_pos_hash_score=438	max_right=172	max_right_minus=136	max_right_plus=172	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.33	new_junction_read_count=23	polymorphism_frequency=2.687e-01	pos_hash_score=16	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=21
JC	996	.	NC_000913	780980	-1	NC_000913	781774	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.025e-02	junction_possible_overlap_registers=293	key=NC_000913__780980__-1__NC_000913__781774__1__-1__A__300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=144	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=37	max_min_right_minus=37	max_min_right_plus=2	max_pos_hash_score=588	max_right=78	max_right_minus=37	max_right_plus=78	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=8.025e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=A
JC	997	.	NC_000913	781222	-1	NC_000913	781321	1	0	alignment_overlap=18	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.865e-02	junction_possible_overlap_registers=276	key=NC_000913__781222__-1__NC_000913__781303__1__18____300__300__0__0	max_left=278	max_left_minus=278	max_left_plus=152	max_min_left=35	max_min_left_minus=35	max_min_left_plus=35	max_min_right=9	max_min_right_minus=9	max_min_right_plus=1	max_pos_hash_score=554	max_right=110	max_right_minus=110	max_right_plus=110	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=8.865e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=7
JC	998	.	NC_000913	781284	-1	NC_000913	781774	1	-1	alignment_overlap=-1	coverage_minus=12	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=2.262e-01	junction_possible_overlap_registers=293	key=NC_000913__781284__-1__NC_000913__781774__1__-1__A__300__300__0__0	max_left=286	max_left_minus=286	max_left_plus=277	max_min_left=122	max_min_left_minus=77	max_min_left_plus=122	max_min_right=68	max_min_right_minus=68	max_min_right_plus=36	max_pos_hash_score=588	max_right=143	max_right_minus=119	max_right_plus=143	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.23	new_junction_read_count=22	polymorphism_frequency=2.262e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=A
JC	999	.	NC_000913	781369	1	NC_000913	2521006	-1	-3	alignment_overlap=-3	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.032e-01	junction_possible_overlap_registers=291	key=NC_000913__781369__1__NC_000913__2521006__-1__-3__GAG__300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=98	max_min_left=22	max_min_left_minus=22	max_min_left_plus=22	max_min_right=76	max_min_right_minus=76	max_min_right_plus=6	max_pos_hash_score=584	max_right=114	max_right_minus=114	max_right_plus=114	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.032e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=GAG
JC	1000	.	NC_000913	781369	1	NC_000913	2521128	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=9.425e-02	junction_possible_overlap_registers=293	key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=98	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=78	max_min_right_minus=78	max_min_right_plus=8	max_pos_hash_score=588	max_right=78	max_right_minus=78	max_right_plus=8	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=9.425e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=G
JC	1001	.	NC_000913	1105173	1	NC_000913	1300693	-1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=1.056e-01	junction_possible_overlap_registers=293	key=NC_000913__1105172__1__NC_000913__1300693__-1__1____300__300__0__1	max_left=226	max_left_minus=190	max_left_plus=226	max_min_left=146	max_min_left_minus=146	max_min_left_plus=133	max_min_right=149	max_min_right_minus=109	max_min_right_plus=149	max_pos_hash_score=588	max_right=265	max_right_minus=265	max_right_plus=248	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=15	polymorphism_frequency=1.056e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	1002	.	NC_000913	1105176	-1	NC_000913	1299499	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=8.696e-02	junction_possible_overlap_registers=294	key=NC_000913__1105176__-1__NC_000913__1299499__1__0____300__300__0__1	max_left=285	max_left_minus=250	max_left_plus=285	max_min_left=145	max_min_left_minus=145	max_min_left_plus=0	max_min_right=132	max_min_right_minus=50	max_min_right_plus=132	max_pos_hash_score=590	max_right=277	max_right_minus=277	max_right_plus=132	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=12	polymorphism_frequency=8.696e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	1003	.	NC_000913	1227665	-1	NC_000913	1228049	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.482e-02	junction_possible_overlap_registers=283	key=NC_000913__1227665__-1__NC_000913__1228038__1__11____300__300__0__0	max_left=57	max_left_minus=57	max_left_plus=57	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=568	max_right=101	max_right_minus=64	max_right_plus=101	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.482e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.37	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=130	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=4
JC	1004	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1.458e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=220	max_min_left=47	max_min_left_minus=47	max_min_left_plus=22	max_min_right=66	max_min_right_minus=66	max_min_right_plus=60	max_pos_hash_score=550	max_right=229	max_right_minus=229	max_right_plus=121	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.458e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=6
JC	1005	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=71	coverage_plus=70	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=146	max_min_left_minus=127	max_min_left_plus=146	max_min_right=142	max_min_right_minus=133	max_min_right_plus=142	max_pos_hash_score=582	max_right=295	max_right_minus=291	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.53	new_junction_read_count=143	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=141
JC	1006	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=294	max_left_minus=280	max_left_plus=294	max_min_left=144	max_min_left_minus=144	max_min_left_plus=142	max_min_right=143	max_min_right_minus=143	max_min_right_plus=132	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=290	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.04	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98
JC	1007	.	NC_000913	1514390	-1	NC_000913	1514811	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.382e-02	junction_possible_overlap_registers=286	key=NC_000913__1514390__-1__NC_000913__1514803__1__8____300__300__0__0	max_left=184	max_left_minus=184	max_left_plus=46	max_min_left=46	max_min_left_minus=46	max_min_left_plus=46	max_min_right=27	max_min_right_minus=27	max_min_right_plus=0	max_pos_hash_score=574	max_right=130	max_right_minus=130	max_right_plus=130	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.382e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	1008	.	NC_000913	1978503	1	NC_000913	2382531	-1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1978503__1__NC_000913__2382531__-1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=281	max_min_left=144	max_min_left_minus=144	max_min_left_plus=136	max_min_right=147	max_min_right_minus=147	max_min_right_plus=144	max_pos_hash_score=590	max_right=290	max_right_minus=266	max_right_plus=290	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.93	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	1009	.	NC_000913	1979270	-1	NC_000913	2382523	1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=57	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979270__-1__NC_000913__2382523__1__0____300__300__1__0	max_left=296	max_left_minus=284	max_left_plus=296	max_min_left=147	max_min_left_minus=147	max_min_left_plus=140	max_min_right=148	max_min_right_minus=148	max_min_right_plus=138	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=109	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	1010	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=67	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=294	max_left_minus=289	max_left_plus=294	max_min_left=145	max_min_left_minus=143	max_min_left_plus=145	max_min_right=145	max_min_right_minus=145	max_min_right_plus=139	max_pos_hash_score=590	max_right=292	max_right_minus=291	max_right_plus=292	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=133	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=127
JC	1011	.	NC_000913	1998321	-1	NC_000913	1998660	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.996e-02	junction_possible_overlap_registers=285	key=NC_000913__1998321__-1__NC_000913__1998651__1__9____300__300__0__0	max_left=190	max_left_minus=190	max_left_plus=190	max_min_left=76	max_min_left_minus=76	max_min_left_plus=76	max_min_right=45	max_min_right_minus=45	max_min_right_plus=45	max_pos_hash_score=572	max_right=198	max_right_minus=198	max_right_plus=198	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.996e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4
JC	1012	.	NC_000913	2357730	-1	NC_000913	2357926	1	0	alignment_overlap=40	coverage_minus=3	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.030e-01	junction_possible_overlap_registers=254	key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0	max_left=163	max_left_minus=163	max_left_plus=163	max_min_left=129	max_min_left_minus=129	max_min_left_plus=62	max_min_right=121	max_min_right_minus=99	max_min_right_plus=121	max_pos_hash_score=510	max_right=198	max_right_minus=131	max_right_plus=198	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=1.030e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=40	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=254	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=9
JC	1013	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.622e-02	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=165	max_left_minus=48	max_left_plus=165	max_min_left=135	max_min_left_minus=48	max_min_left_plus=135	max_min_right=127	max_min_right_minus=0	max_min_right_plus=127	max_pos_hash_score=574	max_right=244	max_right_minus=244	max_right_plus=157	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.622e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1014	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=285	max_left_plus=295	max_min_left=137	max_min_left_minus=136	max_min_left_plus=137	max_min_right=148	max_min_right_minus=148	max_min_right_plus=147	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	1015	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=290	max_min_left=148	max_min_left_minus=148	max_min_left_plus=140	max_min_right=149	max_min_right_minus=127	max_min_right_plus=149	max_pos_hash_score=590	max_right=284	max_right_minus=284	max_right_plus=284	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.93	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86
JC	1016	.	NC_000913	3084977	-1	NC_000913	3085260	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.055e-02	junction_possible_overlap_registers=283	key=NC_000913__3084977__-1__NC_000913__3085249__1__11____300__300__0__0	max_left=196	max_left_minus=196	max_left_plus=113	max_min_left=113	max_min_left_minus=0	max_min_left_plus=113	max_min_right=107	max_min_right_minus=107	max_min_right_plus=0	max_pos_hash_score=568	max_right=176	max_right_minus=107	max_right_plus=176	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.055e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=3
JC	1017	.	NC_000913	3392102	-1	NC_000913	3392377	1	0	alignment_overlap=33	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.014e-02	junction_possible_overlap_registers=261	key=NC_000913__3392102__-1__NC_000913__3392344__1__33____300__300__0__0	max_left=244	max_left_minus=112	max_left_plus=244	max_min_left=112	max_min_left_minus=112	max_min_left_plus=103	max_min_right=22	max_min_right_minus=0	max_min_right_plus=22	max_pos_hash_score=524	max_right=163	max_right_minus=161	max_right_plus=163	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.014e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=33	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=261	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=4
JC	1018	.	NC_000913	3619610	-1	NC_000913	3620121	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=284	key=NC_000913__3619620__-1__NC_000913__3620121__1__10____300__300__1__0	max_left=91	max_left_minus=91	max_left_plus=79	max_min_left=91	max_min_left_minus=91	max_min_left_plus=79	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=134	max_right_minus=134	max_right_plus=134	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=10	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	1019	.	NC_000913	3648068	-1	NC_000913	3648300	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.481e-02	junction_possible_overlap_registers=287	key=NC_000913__3648068__-1__NC_000913__3648293__1__7____300__300__0__0	max_left=162	max_left_minus=162	max_left_plus=156	max_min_left=78	max_min_left_minus=78	max_min_left_plus=78	max_min_right=136	max_min_right_minus=131	max_min_right_plus=136	max_pos_hash_score=576	max_right=209	max_right_minus=208	max_right_plus=209	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=6.481e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.38	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=131	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=8
JC	1020	.	NC_000913	3708466	-1	NC_000913	3708635	1	0	alignment_overlap=108	coverage_minus=14	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=186	key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0	max_left=177	max_left_minus=140	max_left_plus=177	max_min_left=94	max_min_left_minus=94	max_min_left_plus=84	max_min_right=87	max_min_right_minus=61	max_min_right_plus=87	max_pos_hash_score=374	max_right=189	max_right_minus=184	max_right_plus=189	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.60	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=108	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	1021	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=146	max_min_left_minus=146	max_min_left_plus=131	max_min_right=138	max_min_right_minus=137	max_min_right_plus=138	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=291	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.72	new_junction_read_count=68	polymorphism_frequency=9.577e-01	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=66
JC	1022	.	NC_000913	4218441	-1	NC_000913	4218540	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.610e-02	junction_possible_overlap_registers=288	key=NC_000913__4218441__-1__NC_000913__4218534__1__6____300__300__0__0	max_left=202	max_left_minus=53	max_left_plus=202	max_min_left=53	max_min_left_minus=53	max_min_left_plus=0	max_min_right=122	max_min_right_minus=0	max_min_right_plus=122	max_pos_hash_score=578	max_right=292	max_right_minus=292	max_right_plus=122	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=5.610e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=4
JC	1023	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=12	coverage_plus=14	flanking_left=300	flanking_right=300	frequency=1.982e-01	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=266	max_min_left=141	max_min_left_minus=141	max_min_left_plus=119	max_min_right=118	max_min_right_minus=83	max_min_right_plus=118	max_pos_hash_score=572	max_right=233	max_right_minus=209	max_right_plus=233	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.29	new_junction_read_count=27	polymorphism_frequency=1.982e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=26
JC	1024	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=18	coverage_plus=14	flanking_left=300	flanking_right=300	frequency=2.215e-01	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=235	max_left_minus=235	max_left_plus=214	max_min_left=141	max_min_left_minus=141	max_min_left_plus=139	max_min_right=142	max_min_right_minus=142	max_min_right_plus=124	max_pos_hash_score=572	max_right=275	max_right_minus=275	max_right_plus=230	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.36	new_junction_read_count=33	polymorphism_frequency=2.215e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.39	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=132	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=32
UN	1025	.	NC_000913	15642	16465
UN	1026	.	NC_000913	16467	16467
UN	1027	.	NC_000913	16470	16470
UN	1028	.	NC_000913	16472	16472
UN	1029	.	NC_000913	16475	16475
UN	1030	.	NC_000913	20081	20276
UN	1031	.	NC_000913	20285	20285
UN	1032	.	NC_000913	224009	224495
UN	1033	.	NC_000913	225164	225164
UN	1034	.	NC_000913	225166	225166
UN	1035	.	NC_000913	225168	225313
UN	1036	.	NC_000913	225315	225317
UN	1037	.	NC_000913	227256	228423
UN	1038	.	NC_000913	257908	258683
UN	1039	.	NC_000913	270791	271004
UN	1040	.	NC_000913	271020	271020
UN	1041	.	NC_000913	274248	274869
UN	1042	.	NC_000913	279437	279657
UN	1043	.	NC_000913	290912	290912
UN	1044	.	NC_000913	290916	290916
UN	1045	.	NC_000913	290918	291128
UN	1046	.	NC_000913	315510	316227
UN	1047	.	NC_000913	381547	382320
UN	1048	.	NC_000913	391979	391979
UN	1049	.	NC_000913	391987	392686
UN	1050	.	NC_000913	392688	392688
UN	1051	.	NC_000913	526103	526432
UN	1052	.	NC_000913	567034	567034
UN	1053	.	NC_000913	567038	567038
UN	1054	.	NC_000913	567040	567770
UN	1055	.	NC_000913	574861	575508
UN	1056	.	NC_000913	608268	608268
UN	1057	.	NC_000913	608274	609089
UN	1058	.	NC_000913	609092	609092
UN	1059	.	NC_000913	688131	688765
UN	1060	.	NC_000913	730475	730475
UN	1061	.	NC_000913	730486	730486
UN	1062	.	NC_000913	730492	730493
UN	1063	.	NC_000913	730495	731485
UN	1064	.	NC_000913	1094509	1095245
UN	1065	.	NC_000913	1196374	1211413
UN	1066	.	NC_000913	1299499	1300697
UN	1067	.	NC_000913	1396315	1396316
UN	1068	.	NC_000913	1396318	1396318
UN	1069	.	NC_000913	1396320	1396964
UN	1070	.	NC_000913	1468165	1468967
UN	1071	.	NC_000913	1469550	1469550
UN	1072	.	NC_000913	1469563	1469563
UN	1073	.	NC_000913	1469572	1469573
UN	1074	.	NC_000913	1469576	1470228
UN	1075	.	NC_000913	1528561	1528564
UN	1076	.	NC_000913	1528566	1528890
UN	1077	.	NC_000913	1651104	1651105
UN	1078	.	NC_000913	1651109	1651278
UN	1079	.	NC_000913	1978495	1979270
UN	1080	.	NC_000913	2066998	2066998
UN	1081	.	NC_000913	2067001	2067038
UN	1082	.	NC_000913	2069216	2070027
UN	1083	.	NC_000913	2102006	2102008
UN	1084	.	NC_000913	2102011	2102663
UN	1085	.	NC_000913	2170438	2171135
UN	1086	.	NC_000913	2289204	2289204
UN	1087	.	NC_000913	2289207	2289831
UN	1088	.	NC_000913	2514540	2515350
UN	1089	.	NC_000913	2726336	2729009
UN	1090	.	NC_000913	2729824	2729824
UN	1091	.	NC_000913	2729829	2729829
UN	1092	.	NC_000913	2729834	2730740
UN	1093	.	NC_000913	2996616	2997407
UN	1094	.	NC_000913	2997409	2997409
UN	1095	.	NC_000913	2997412	2997413
UN	1096	.	NC_000913	2997421	2997422
UN	1097	.	NC_000913	2997425	2997425
UN	1098	.	NC_000913	3130426	3131076
UN	1099	.	NC_000913	3186330	3186330
UN	1100	.	NC_000913	3186338	3186338
UN	1101	.	NC_000913	3186347	3187154
UN	1102	.	NC_000913	3187156	3187157
UN	1103	.	NC_000913	3187159	3187160
UN	1104	.	NC_000913	3365830	3366464
UN	1105	.	NC_000913	3366466	3366466
UN	1106	.	NC_000913	3366468	3366468
UN	1107	.	NC_000913	3423933	3424376
UN	1108	.	NC_000913	3424378	3424378
UN	1109	.	NC_000913	3424383	3424383
UN	1110	.	NC_000913	3424871	3426578
UN	1111	.	NC_000913	3427216	3428294
UN	1112	.	NC_000913	3470431	3470432
UN	1113	.	NC_000913	3470434	3470444
UN	1114	.	NC_000913	3470449	3470449
UN	1115	.	NC_000913	3583704	3583704
UN	1116	.	NC_000913	3583706	3583912
UN	1117	.	NC_000913	3619537	3620802
UN	1118	.	NC_000913	3620804	3620804
UN	1119	.	NC_000913	3621336	3621336
UN	1120	.	NC_000913	3621338	3621338
UN	1121	.	NC_000913	3621340	3621340
UN	1122	.	NC_000913	3621342	3621343
UN	1123	.	NC_000913	3621346	3622064
UN	1124	.	NC_000913	3622066	3622069
UN	1125	.	NC_000913	3652291	3652955
UN	1126	.	NC_000913	3652958	3652959
UN	1127	.	NC_000913	3708467	3708549
UN	1128	.	NC_000913	3762508	3763792
UN	1129	.	NC_000913	3763796	3763796
UN	1130	.	NC_000913	3764349	3765049
UN	1131	.	NC_000913	3942264	3942264
UN	1132	.	NC_000913	3942272	3943163
UN	1133	.	NC_000913	3944320	3945301
UN	1134	.	NC_000913	3945304	3945304
UN	1135	.	NC_000913	3945306	3945306
UN	1136	.	NC_000913	4035445	4036846
UN	1137	.	NC_000913	4036848	4036849
UN	1138	.	NC_000913	4038102	4038710
UN	1139	.	NC_000913	4038980	4038980
UN	1140	.	NC_000913	4039001	4039102
UN	1141	.	NC_000913	4039104	4039105
UN	1142	.	NC_000913	4039677	4040326
UN	1143	.	NC_000913	4040328	4040328
UN	1144	.	NC_000913	4166560	4166560
UN	1145	.	NC_000913	4166563	4166567
UN	1146	.	NC_000913	4166569	4166569
UN	1147	.	NC_000913	4166571	4166571
UN	1148	.	NC_000913	4166573	4166573
UN	1149	.	NC_000913	4166576	4166589
UN	1150	.	NC_000913	4166925	4167991
UN	1151	.	NC_000913	4168830	4171384
UN	1152	.	NC_000913	4171386	4171386
UN	1153	.	NC_000913	4171414	4171415
UN	1154	.	NC_000913	4208395	4209459
UN	1155	.	NC_000913	4209461	4209462
UN	1156	.	NC_000913	4210285	4212840
UN	1157	.	NC_000913	4212842	4212844
UN	1158	.	NC_000913	4498470	4499235
UN	1159	.	NC_000913	4499239	4499239
UN	1160	.	NC_000913	4507742	4507743
UN	1161	.	NC_000913	4507747	4508416