mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 92,790 | C→T | P460S (CCG→TCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 238,884 | G→A | intergenic (‑148/+535) | ykfM ← / ← yafV | uncharacterized protein YkfM/2‑oxoglutaramate amidase |
| RA | 239,930 | G→A | S87F (TCT→TTT) | yafV ← | 2‑oxoglutaramate amidase |
| RA | 243,084 | G→A | R74C (CGC→TGC) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 245,766 | G→A | P14S (CCG→TCG) | dpaA ← | peptidoglycan meso‑diaminopimelic acid protein amidase A |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| RA | 251,604 | G→A | S236N (AGC→AAC) | dinB → | DNA polymerase IV |
| RA | 252,349 | G→A | E17K (GAA→AAA) | yafO → | ribosome‑dependent mRNA interferase toxin YafO |
| JC JC | 252,442 | IS5 (–) +4 bp | coding (142‑145/399 nt) | yafO → | ribosome‑dependent mRNA interferase toxin YafO |
| RA | 253,835 | G→A | intergenic (+674/+424) | yafP → / ← pepD | putative N‑acetyltransferase YafP/peptidase D |
| RA | 266,523 | G→A | L11L (CTG→TTG) | yafY ← | inner membrane lipoprotein YafY |
| RA | 267,149 | G→A | intergenic (‑596/+35) | yafY ← / ← yafZ | inner membrane lipoprotein YafY/DUF932 domain‑containing protein YafZ |
| RA | 268,709 | G→A | R84R (CGC→CGT) | ykfA ← | putative GTP‑binding protein YkfA |
| RA | 273,450 | G→A | A202T (GCG→ACG) | ykfC → | PF00078 domain‑containing protein YkfC |
| RA | 273,734 | G→A | Q296Q (CAG→CAA) | ykfC → | PF00078 domain‑containing protein YkfC |
| RA | 274,939 | G→A | A48V (GCT→GTT) | insH1 ← | IS5 family transposase and trans‑activator |
| RA | 274,985 | G→A | P33S (CCA→TCA) | insH1 ← | IS5 family transposase and trans‑activator |
| RA | 275,668 | G→A | G115E (GGA→GAA) | mmuP → | S‑methyl‑L‑methionine transporter |
| RA | 277,277 | G→A | R188H (CGT→CAT) | mmuM → | homocysteine S‑methyltransferase |
| RA | 281,053 | T→C | T311A (ACG→GCG) | yagA ← | integrase core domain‑containing protein YagA |
| RA | 281,778 | G→A | S69F (TCC→TTC) | yagA ← | integrase core domain‑containing protein YagA |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 285,966 | G→A | G191D (GGC→GAC) | yagG → | putative D‑xylonate transporter YagG |
| RA | 287,324 | G→A | G179D (GGC→GAC) | yagH → | putative xylosidase/arabinosidase |
| RA | 287,348 | G→A | G187D (GGC→GAC) | yagH → | putative xylosidase/arabinosidase |
| RA | 287,946 | G→A | W386* (TGG→TGA) | yagH → | putative xylosidase/arabinosidase |
| RA | 288,641 | G→A | A174A (GCC→GCT) | xynR ← | DNA‑binding transcriptional repressor XynR |
| RA | 305,439 | G→A | S460F (TCC→TTC) | ecpD ← | fimbrial adhesin EcpD |
| RA | 305,990 | G→A | I276I (ATC→ATT) | ecpD ← | fimbrial adhesin EcpD |
| RA | 308,924 | G→A | R137C (CGC→TGC) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 314,622 | G→A | intergenic (‑1380/‑669) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 316,519 | G→A | intergenic (+66/+1207) | insF1 → / ← rclC | IS3 element protein InsF/DUF417 domain‑containing inner membrane protein RclC |
| RA | 316,837 | G→A | intergenic (+384/+889) | insF1 → / ← rclC | IS3 element protein InsF/DUF417 domain‑containing inner membrane protein RclC |
| RA | 320,300 | G→A | S25N (AGT→AAT) | rclR → | DNA‑binding transcriptional activator RclR |
| RA | 328,266 | G→A | I156I (ATC→ATT) | betB ← | betaine aldehyde dehydrogenase |
| RA | 328,598 | C→T | V46I (GTC→ATC) | betB ← | betaine aldehyde dehydrogenase |
| RA | 328,801 | G→A | T178T (ACC→ACT) | betI ← | DNA‑binding transcriptional repressor BetI |
| RA | 337,387 | G→A | E204K (GAG→AAG) | yahF → | putative acyl‑CoA synthetase YahF |
| RA | 339,376 | G→A | G351E (GGG→GAG) | yahG → | DUF1116 domain‑containing protein YahG |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 343,442 | G→A | G187R (GGA→AGA) | yahK → | aldehyde reductase, NADPH‑dependent |
| RA | 347,833 | G→A | A204V (GCC→GTC) | prpR ← | DNA‑binding transcriptional dual regulator PrpR |
| RA | 352,368 | G→A | C385Y (TGC→TAC) | prpD → | 2‑methylcitrate dehydratase |
| RA | 352,850 | G→A | G49S (GGC→AGC) | prpE → | propionyl‑CoA synthetase |
| RA | 353,100 | G→A | G132D (GGC→GAC) | prpE → | propionyl‑CoA synthetase |
| RA | 355,006 | G→A | G29R (GGA→AGA) | codB → | cytosine transporter |
| RA | 355,064 | G→A | S48N (AGC→AAC) | codB → | cytosine transporter |
| RA | 355,229 | G→A | G103E (GGA→GAA) | codB → | cytosine transporter |
| RA | 357,285 | G→A | G372E (GGA→GAA) | codA → | cytosine/isoguanine deaminase |
| RA | 358,368 | G→A | P108L (CCC→CTC) | cynR ← | DNA‑binding transcriptional dual regulator CynR |
| RA | 359,684 | G→A | D66N (GAT→AAT) | cynS → | cyanase |
| RA | 360,082 | G→A | G31R (GGA→AGA) | cynX → | cyanate transporter |
| RA | 360,536 | C→T | S182F (TCC→TTC) | cynX → | cyanate transporter |
| RA | 360,786 | G→A | M265I (ATG→ATA) | cynX → | cyanate transporter |
| RA | 361,489 | G→A | N124N (AAC→AAT) | lacA ← | galactoside O‑acetyltransferase |
| RA | 364,433 | G→A | Q625* (CAG→TAG) | lacZ ← | beta‑galactosidase |
| RA | 365,146 | G→A | A387V (GCC→GTC) | lacZ ← | beta‑galactosidase |
| RA | 365,222 | G→A | P362S (CCT→TCT) | lacZ ← | beta‑galactosidase |
| RA | 365,959 | G→A | P116L (CCC→CTC) | lacZ ← | beta‑galactosidase |
| RA | 366,121 | G→A | A62V (GCC→GTC) | lacZ ← | beta‑galactosidase |
| RA | 372,529 | G→A | V139M (GTG→ATG) | mhpD → | 2‑hydroxypentadienoate hydratase |
| RA | 373,341 | G→A | A141T (GCG→ACG) | mhpF → | acetaldehyde dehydrogenase (acetylating) MhpF |
| RA | 375,168 | G→A | intergenic (+287/‑291) | mhpE → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 376,673 | T→C | intergenic (+3/‑99) | mhpT → / → yaiL | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter/DUF2058 domain‑containing protein YaiL |
| RA | 378,885 | G→A | R229R (CGC→CGT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | 382,571 | G→A | E300K (GAA→AAA) | insD1 → | IS2 element protein |
| RA | 382,943 | G→A | C331C (TGC→TGT) | yaiP ← | putative glucosyltransferase |
| RA | 384,839 | G→A | intergenic (‑223/‑393) | yaiS ← / → tauA | putative deacetylase YaiS/taurine ABC transporter periplasmic binding protein |
| RA | 386,290 | G→A | E28E (GAG→GAA) | tauB → | taurine ABC transporter ATP binding subunit |
| RA | 387,624 | G→A | E218E (GAG→GAA) | tauC → | taurine ABC transporter membrane subunit |
| RA | 398,073 | G→A | G68R (GGG→AGG) | yaiW → | surface‑exposed outer membrane lipoprotein |
| RA | 398,494 | G→A | G208D (GGC→GAC) | yaiW → | surface‑exposed outer membrane lipoprotein |
| RA | 400,495 | G→A | V143V (GTC→GTT) | ddlA ← | D‑alanine‑‑D‑alanine ligase A |
| RA | 403,108 | G→A | L454L (CTG→CTA) | phoA → | alkaline phosphatase |
| RA | 430,452 | G→A | A316A (GCG→GCA) | secF → | Sec translocon accessory complex subunit SecF |
| RA | 431,516 | A→C | Y166* (TAT→TAG) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| JC JC | 480,334 | IS5 (+) +4 bp | coding (372‑375/375 nt) | tomB ← | Hha toxicity modulator TomB |
| MC JC | 575,786 | Δ1,438 bp | IS5‑mediated | [nmpC] | [nmpC] |
| JC JC | 607,765 | IS150 (+) +3 bp | noncoding (26‑28/60 nt) | sokE ← | small RNA SokE |
| RA | 640,502 | C→A | L250L (CTC→CTA) | ahpF → | alkyl hydroperoxide reductase, AhpF component |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 692,073 | C→T | R90H (CGT→CAT) | ybeY ← | endoribonuclease YbeY |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 904,743 | G→A | E51K (GAA→AAA) | ybjQ → | putative heavy metal binding protein YbjQ |
| RA | 924,040 | Δ1 bp | coding (777/2277 nt) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 982,393 | C→T | S449S (AGC→AGT) | ldtD → | L,D‑transpeptidase LdtD |
| RA | 983,549 | C→T | R159C (CGC→TGC) | mepK → | peptidoglycan L,D‑endopeptidase |
| RA | 988,952 | C→T | G12S (GGC→AGC) | asnS ← | asparagine‑‑tRNA ligase |
| RA | 993,163 | C→T | L848L (CTG→TTG) | pepN → | aminopeptidase N |
| RA | 993,345 | C→T | E234K (GAA→AAA) | ssuB ← | aliphatic sulfonate ABC transporter ATP binding subunit |
| RA | 999,933 | G→A | A240T (GCG→ACG) | elfC → | putative fimbrial usher protein ElfC |
| RA | 1,002,029 | G→A | D75N (GAT→AAT) | elfG → | putative fimbrial‑like adhesin protein |
| RA | 1,002,512 | G→A | V236I (GTC→ATC) | elfG → | putative fimbrial‑like adhesin protein |
| RA | 1,003,476 | G→A | G13E (GGA→GAA) | ycbV → | putative fimbrial protein YcbV |
| RA | 1,003,832 | G→A | D132N (GAC→AAC) | ycbV → | putative fimbrial protein YcbV |
| RA | 1,007,217 | G→A | T128T (ACC→ACT) | ycbX ← | 6‑N‑hydroxylaminopurine resistance protein |
| RA | 1,008,349 | G→A | G169D (GGT→GAT) | rlmL → | fused 23S rRNA m(2)G2445 methyltransferase and 23S rRNA m(7)G2069 methyltransferase |
| RA | 1,008,711 | G→A | D290N (GAT→AAT) | rlmL → | fused 23S rRNA m(2)G2445 methyltransferase and 23S rRNA m(7)G2069 methyltransferase |
| RA | 1,018,193 | C→T | S36N (AGT→AAT) | ycbZ ← | putative ATP‑dependent protease YcbZ |
| RA | 1,018,697 | G→A | K71K (AAG→AAA) | matP → | macrodomain Ter protein |
| RA | 1,019,936 | G→A | H40Y (CAT→TAT) | ompA ← | outer membrane protein A |
| RA | 1,021,404 | G→A | W89* (TGG→TGA) | sxy → | transcriptional coactivator for CRP |
| RA | 1,021,707 | G→A | E190E (GAG→GAA) | sxy → | transcriptional coactivator for CRP |
| RA | 1,022,002 | C→T | E628K (GAG→AAG) | yccS ← | putative transporter YccS |
| RA | 1,023,148 | C→T | D246N (GAT→AAT) | yccS ← | putative transporter YccS |
| RA | 1,033,177 | G→A | A347T (GCC→ACC) | hyaA → | hydrogenase 1 small subunit |
| RA | 1,035,862 | C→T | A31A (GCC→GCT) | hyaD → | putative hydrogenase 1 maturation protease HyaD |
| RA | 1,036,085 | C→T | L106L (CTG→TTG) | hyaD → | putative hydrogenase 1 maturation protease HyaD |
| RA | 1,037,810 | C→T | P24L (CCC→CTC) | appC → | cytochrome bd‑II subunit 1 |
| RA | 1,038,262 | G→A | V175I (GTC→ATC) | appC → | cytochrome bd‑II subunit 1 |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,043,376 | C→T | V279M (GTG→ATG) | etk ← | protein‑tyrosine kinase Etk |
| RA | 1,049,599 | G→A | A49V (GCT→GTT) | gfcA ← | threonine‑rich inner membrane protein GfcA |
| RA | 1,050,408 | T→C | Y128H (TAT→CAT) | insB4 → | IS1 family protein InsB |
| RA | 1,053,046 | G→A | A106V (GCT→GTT) | yccM ← | putative electron transport protein YccM |
| RA | 1,055,173 | G→A | L336L (CTG→TTG) | torS ← | sensor histidine kinase TorS |
| RA | 1,056,371 | G→A | T37T (ACG→ACA) | torT → | periplasmic trimethylamine‑N‑oxide binding protein |
| RA | 1,061,662 | G→A | A803T (GCG→ACG) | torA → | trimethylamine N‑oxide reductase 1 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,067,368 | G→A | T114I (ACC→ATC) | wrbA ← | NAD(P)H:quinone oxidoreductase |
| RA | 1,069,884 | G→A | H157H (CAC→CAT) | rutF ← | FMN reductase RutF |
| RA | 1,070,014 | A→G | L114P (CTG→CCG) | rutF ← | FMN reductase RutF |
| RA | 1,070,238 | G→A | V39V (GTC→GTT) | rutF ← | FMN reductase RutF |
| RA | 1,071,085 | G→A | S227S (AGC→AGT) | rutD ← | putative aminoacrylate hydrolase RutD |
| RA | 1,073,367 | G→A | F215F (TTC→TTT) | rutA ← | pyrimidine monooxygenase RutA |
| RA | 1,076,410 | G→A | P825S (CCA→TCA) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,080,561 | G→A | S419S (TCG→TCA) | putP → | proline:Na(+) symporter |
| RA | 1,089,596 | G→A | P88S (CCG→TCG) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase and beta‑1,6 glycoside hydrolase |
| JC JC | 1,090,416 | IS2 (–) +5 bp | coding (1870‑1874/2424 nt) | pgaA ← | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export outer membrane porin |
| JC JC | 1,093,120 | IS5 (–) +4 bp | coding (245‑248/1359 nt) | dgcT → | putative diguanylate cyclase DgcT |
| RA | 1,094,018 | G→A | R381R (AGG→AGA) | dgcT → | putative diguanylate cyclase DgcT |
| MC JC | 1,095,503 | Δ10,045 bp | IS3‑mediated | ycdU–[ymdA] | ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, [ymdA] |
| RA | 1,108,722 | G→A | L74F (CTT→TTT) | opgC ← | osmoregulated periplasmic glucans (OPG) biosynthesis protein C |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,113,099 | G→A | G746D (GGC→GAC) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,116,285 | G→A | P100S (CCG→TCG) | lpxL ← | lauroyl acyltransferase |
| RA | 1,119,944 | G→A | P215S (CCC→TCC) | solA ← | N‑methyl‑L‑tryptophan oxidase |
| RA | 1,121,067 | G→A | intergenic (‑112/+175) | bssS ← / ← dinI | regulator of biofilm formation/DNA damage‑inducible protein I |
| RA | 1,124,110 | G→A | intergenic (‑56/+8) | grxB ← / ← mdtH | reduced glutaredoxin 2/multidrug efflux pump MdtH |
| RA | 1,127,402 | G→A | E199E (GAG→GAA) | yceM → | putative oxidoreductase YceM |
| RA | 1,135,025 | G→A | G99G (GGG→GGA) | flgG → | flagellar basal‑body rod protein FlgG |
| RA | 1,137,491 | G→A | E41K (GAA→AAA) | flgJ → | putative peptidoglycan hydrolase FlgJ |
| RA | 1,141,141 | G→A | intergenic (+78/+41) | flgO → / ← rne | small RNA FlgO/ribonuclease E |
| RA | 1,141,735 | G→A | A878V (GCC→GTC) | rne ← | ribonuclease E |
| RA | 1,150,613 | G→A | A296T (GCG→ACG) | fabD → | [acyl‑carrier‑protein] S‑malonyltransferase |
| RA | 1,150,616 | C→T | L297L (CTG→TTG) | fabD → | [acyl‑carrier‑protein] S‑malonyltransferase |
| RA | 1,151,671 | G→A | K19K (AAG→AAA) | acpP → | acyl carrier protein |
| RA | 1,152,652 | G→A | M238I (ATG→ATA) | fabF → | 3‑oxoacyl‑[acyl carrier protein] synthase 2 |
| RA | 1,156,228 | G→A | R156H (CGT→CAT) | holB → | DNA polymerase III subunit delta' |
| RA | 1,166,733 | G→A | G217R (GGA→AGA) | ndh → | NADH:quinone oxidoreductase II |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,176,064 | G→A | R213H (CGT→CAT) | lolC → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,180,419 | G→A | intergenic (+60/+60) | cobB → / ← ycfZ | protein‑lysine deacetylase/desuccinylase/lipoamidase/putative inner membrane protein YcfZ |
| RA | 1,182,046 | G→A | P262S (CCG→TCG) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,182,374 | G→A | A152A (GCC→GCT) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,182,939 | G→A | P228S (CCG→TCG) | potC ← | spermidine preferential ABC transporter membrane subunit PotC |
| RA | 1,184,436 | G→A | V3V (GTC→GTT) | potB ← | spermidine preferential ABC transporter membrane subunit PotB |
| RA | 1,185,840 | C→T | intergenic (‑246/‑4) | potA ← / → pepT | spermidine preferential ABC transporter ATP binding subunit/peptidase T |
| RA | 1,187,181 | G→A | P354S (CCG→TCG) | roxA ← | 50S ribosomal protein L16‑arginine 3‑hydroxylase |
| RA | 1,187,889 | G→A | P118S (CCC→TCC) | roxA ← | 50S ribosomal protein L16‑arginine 3‑hydroxylase |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,193,645 | G→A | D43D (GAC→GAT) | mnmA ← | tRNA‑specific 2‑thiouridylase |
| RA | 1,194,035 | G→A | A85V (GCC→GTC) | nudJ ← | phosphatase NudJ |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,258 | G→A | G379D (GGT→GAT) | icd → | isocitrate dehydrogenase |
| RA | 1,216,842 | G→A | S32N (AGT→AAT) | ymgC → | protein YmgC |
| RA | 1,220,154 | G→A | intergenic (+953/+2151) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,220,972 | G→A | intergenic (+1771/+1333) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,221,065 | G→A | intergenic (+1864/+1240) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,221,305 | G→A | intergenic (+2104/+1000) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,222,997 | T→C | D56G (GAC→GGC) | ymgI ← | uncharacterized protein YmgI |
| RA | 1,226,592 | G→A | intergenic (‑512/‑8) | minC ← / → ycgJ | Z‑ring positioning protein MinC/PF05666 family protein YcgJ |
| JC JC | 1,232,148 | IS2 (–) +5 bp | coding (963‑967/1269 nt) | umuC → | DNA polymerase V catalytic protein |
| RA | 1,233,309 | G→A | S470F (TCT→TTT) | nhaB ← | Na(+):H(+) antiporter NhaB |
| RA | 1,238,548 | G→A | P326P (CCG→CCA) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,241,309 | G→A | L255L (CTG→TTG) | cvrA ← | putative K(+):H(+) antiporter |
| RA | 1,242,662 | G→A | A140V (GCC→GTC) | ldcA ← | murein tetrapeptide carboxypeptidase |
| RA | 1,243,001 | G→A | T27I (ACC→ATC) | ldcA ← | murein tetrapeptide carboxypeptidase |
| RA | 1,245,847 | G→A | G510G (GGC→GGT) | treA ← | periplasmic trehalase |
| RA | 1,248,623 | G→A | N164N (AAC→AAT) | dhaM ← | dihydroxyacetone kinase subunit M |
| RA | 1,249,710 | G→A | G16G (GGC→GGT) | dhaL ← | dihydroxyacetone kinase subunit L |
| RA | 1,252,625 | G→A | R520R (CGG→CGA) | dhaR → | DNA‑binding transcriptional dual regulator DhaR |
| RA | 1,263,983 | G→A | W90* (TGG→TGA) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,264,960 | G→A | G416E (GGG→GAG) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,265,367 | C→A | T119N (ACC→AAC) | prfA → | peptide chain release factor RF1 |
| RA | 1,265,471 | G→A | G154S (GGT→AGT) | prfA → | peptide chain release factor RF1 |
| RA | 1,268,984 | G→A | V274M (GTG→ATG) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
| RA | 1,275,340 | G→A | L164F (CTC→TTC) | narL ← | DNA‑binding transcriptional dual regulator NarL |
| RA | 1,275,778 | G→A | L18L (CTG→TTG) | narL ← | DNA‑binding transcriptional dual regulator NarL |
| RA | 1,276,230 | C→T | P463P (CCG→CCA) | narX ← | sensor histidine kinase NarX |
| RA | 1,286,116 | G→A | A90T (GCA→ACA) | narI → | nitrate reductase A subunit gamma |
| RA | 1,287,042 | G→A | intergenic (+58/+24) | ychS → / ← rttR | putative uncharacterized protein YchS/small RNA RttR |
| RA | 1,288,840 | G→A | A98V (GCT→GTT) | ychJ ← | NTF2‑like domain‑containing protein YchJ |
| RA | 1,291,519 | G→A | R21R (AGG→AGA) | galU → | UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| RA | 1,295,026 | G→A | intergenic (+882/+420) | tdk → / ← adhE | thymidine/deoxyuridine kinase/fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE |
| RA | 1,296,469 | G→A | A551A (GCC→GCT) | adhE ← | fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| JC JC | 1,301,713 | IS30 (–) +2 bp | coding (532‑533/1632 nt) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,315,384 | G→A | Y129Y (TAC→TAT) | yciF ← | DUF892 domain‑containing protein YciF |
| RA | 1,317,129 | G→A | Q32* (CAG→TAG) | trpA ← | tryptophan synthase subunit alpha |
| RA | 1,322,325 | G→A | L208F (CTC→TTC) | trpE ← | anthranilate synthase subunit TrpE |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,356,932 | G→A | T60I (ACC→ATC) | sapA ← | putative periplasmic binding protein SapA |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| JC JC | 1,360,653 | IS3 (–) +3 bp | coding (254‑256/1419 nt) | puuA ← | glutamate‑putrescine ligase |
| RA | 1,360,740 | G→A | P57S (CCT→TCT) | puuA ← | glutamate‑putrescine ligase |
| RA | 1,362,062 | C→A | T51K (ACG→AAG) | puuR → | DNA‑binding transcriptional repressor PuuR |
| RA | 1,366,433 | G→A | G295D (GGC→GAC) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| MC JC | 1,382,901 | Δ13,143 bp | IS5‑mediated | ycjW–ynaI | ycjW, ycjX, ycjF, tyrR, tpx, ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI |
| RA | 1,400,978 | C→T | G266S (GGT→AGT) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| RA | 1,423,272 | 2 bp→TA | coding (521‑522/561 nt) | ydaW → | putative uncharacterized protein YdaW |
| RA | 1,423,283 | 2 bp→CC | coding (532‑533/561 nt) | ydaW → | putative uncharacterized protein YdaW |
| RA | 1,423,338 | G→C | intergenic (+26/‑62) | ydaW → / → rzoR | putative uncharacterized protein YdaW/putative prophage outer membrane lipoprotein RzoR |
| RA | 1,423,404 | G→T | R2L (CGA→CTA) | rzoR → | putative prophage outer membrane lipoprotein RzoR |
| RA | 1,428,954 | T→A | pseudogene (159/189 nt) | lomR → | Rac prophage; protein LomR_1 |
| RA | 1,428,963 | G→T | pseudogene (168/189 nt) | lomR → | Rac prophage; protein LomR_1 |
| RA | 1,428,966 | T→G | pseudogene (171/189 nt) | lomR → | Rac prophage; protein LomR_1 |
| RA | 1,428,978 | G→A | pseudogene (183/189 nt) | lomR → | Rac prophage; protein LomR_1 |
| RA | 1,429,021 | 2 bp→AA | intergenic (+37/‑27) | lomR → / → stfR | Rac prophage; protein LomR_1/putative prophage side tail fiber protein StfR |
| RA | 1,429,024 | A→C | intergenic (+40/‑25) | lomR → / → stfR | Rac prophage; protein LomR_1/putative prophage side tail fiber protein StfR |
| RA | 1,429,027 | C→T | intergenic (+43/‑22) | lomR → / → stfR | Rac prophage; protein LomR_1/putative prophage side tail fiber protein StfR |
| RA | 1,429,069 | T→A | G7G (GGT→GGA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,072 | A→C | V8V (GTA→GTC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,111 | A→C | T21T (ACA→ACC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,114 | C→T | I22I (ATC→ATT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,126 | A→C | A26A (GCA→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,128 | A→G | K27R (AAA→AGA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,160 | C→G | L38V (CTG→GTG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,164 | C→G | A39G (GCC→GGC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,171 | A→G | E41E (GAA→GAG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,204 | C→T | D52D (GAC→GAT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,207 | T→G | V53V (GTT→GTG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,225 | C→T | S59S (AGC→AGT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,228 | T→C | V60V (GTT→GTC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,231 | T→C | I61I (ATT→ATC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,235 | 2 bp→CA | coding (187‑188/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,240 | G→T | V64V (GTG→GTT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,243 | A→C | E65D (GAA→GAC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,246 | A→T | G66G (GGA→GGT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,249 | C→T | F67F (TTC→TTT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,252 | G→A | P68P (CCG→CCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,255 | G→A | P69P (CCG→CCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,258 | A→G | S70S (TCA→TCG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,261 | T→C | H71H (CAT→CAC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,273 | T→C | I75I (ATT→ATC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,291 | T→A | S81S (TCT→TCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,297 | C→G | P83P (CCC→CCG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,300 | T→G | G84G (GGT→GGG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,319 | G→T | G91C (GGT→TGT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,345 | T→G | R99R (CGT→CGG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,353 | 2 bp→TG | coding (305‑306/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,360 | C→T | R104R (CGC→CGT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,364 | T→C | F106L (TTT→CTT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,404 | C→T | A119V (GCG→GTG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,416 | 2 bp→GT | coding (368‑369/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,425 | C→A | A126D (GCC→GAC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,435 | G→A | K129K (AAG→AAA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,442 | A→G | S132G (AGT→GGC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,444 | T→C | S132G (AGT→GGC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,453 | 2 bp→TG | coding (405‑406/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,462 | 3 bp→TGC | coding (414‑416/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,466 | G→C | E140Q (GAG→CAG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,470 | 2 bp→TC | coding (422‑423/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,474 | 2 bp→GG | coding (426‑427/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,479 | A→T | H144L (CAT→CTT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,482 | C→T | A145V (GCG→GTG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,484 | G→A | A146T (GCT→ACT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,492 | 2 bp→AA | coding (444‑445/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,495 | G→T | A149A (GCG→GCT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,510 | A→C | A154A (GCA→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,522 | A→C | S158S (TCA→TCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,534 | C→T | A162A (GCC→GCT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,537 | G→A | A163A (GCG→GCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,543 | G→A | S165S (TCG→TCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,550 | 2 bp→GA | coding (502‑503/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,558 | T→C | S170S (TCT→TCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,562 | A→G | S172G (AGC→GGC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,569 | G→A | G174E (GGA→GAA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,571 | A→G | T175A (ACG→GCG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,580 | A→G | T178A (ACA→GCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,597 | 3 bp→GGA | coding (549‑551/3363 nt) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,609 | T→C | A187A (GCT→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,612 | C→A | A188A (GCC→GCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,615 | T→C | A189A (GCT→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,632 | G→A | S195N (AGC→AAC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,682 | T→G | S212A (TCA→GCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,692 | T→A | L215Q (CTA→CAA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,702 | A→C | A218A (GCA→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,708 | A→G | T220T (ACA→ACG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,714 | A→C | A222A (GCA→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,724 | A→G | T226A (ACC→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,732 | G→A | K228K (AAG→AAA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,735 | A→G | A229A (GCA→GCG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,741 | A→G | E231E (GAA→GAG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,744 | T→C | A232A (GCT→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,747 | G→C | A233A (GCG→GCC) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,750 | C→T | T234T (ACC→ACT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,753 | G→A | S235S (TCG→TCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,756 | C→A | A236A (GCC→GCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,759 | G→A | R237R (CGG→CGA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,767 | C→T | A240V (GCG→GTG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,780 | A→G | E244E (GAA→GAG) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,783 | G→A | A245A (GCG→GCA) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,816 | C→T | S256S (AGC→AGT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,820 | A→G | S258G (AGT→GGT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,429,823 | A→C | S259R (AGT→CGT) | stfR → | putative prophage side tail fiber protein StfR |
| RA | 1,452,383 | G→A | G420G (GGC→GGT) | paaZ ← | fused 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase and oxepin‑CoA hydrolase |
| RA | 1,501,192 | C→T | P207L (CCT→CTT) | tehA → | tellurite resistance protein |
| RA | 1,567,545 | G→A | Q427* (CAA→TAA) | digH ← | divisome localized glycosyl hydrolase |
| RA | 1,568,119 | G→A | D235D (GAC→GAT) | digH ← | divisome localized glycosyl hydrolase |
| JC JC | 1,590,457 | IS2 (+) +5 bp | intergenic (‑456/+393) | ydeT ← / ← hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA |
| RA | 1,610,076 | T→G | D202A (GAT→GCT) | uxaB ← | tagaturonate reductase |
| RA | 1,613,994 | C→T | G237D (GGT→GAT) | sad ← | succinate semialdehyde dehydrogenase (NAD(P)(+)) Sad |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,693,907 | G→A | L119L (CTC→CTT) | uidB ← | glucuronide:H(+) symporter |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,745,025 | G→A | A368V (GCA→GTA) | ydhQ ← | putative adhesin‑related protein YdhQ |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| MC JC | 1,867,696 | Δ7 bp | coding (789‑795/1935 nt) | yeaG → | protein kinase YeaG |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| JC JC | 1,907,451 | IS2 (+) +5 bp | coding (137‑141/144 nt) | yobF ← | DUF2527 domain‑containing protein YobF |
| RA | 1,939,272 | G→A | P308S (CCG→TCG) | lpxM ← | Lipid A biosynthesis myristoyltransferase |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 2,030,411 | G→A | P291P (CCG→CCA) | yedA → | putative transporter YedA |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,083,707 | G→A | E318K (GAA→AAA) | sbcB → | exodeoxyribonuclease I |
| MC JC | 2,102,944 | Δ1,424 bp | IS5‑mediated | [wbbL]–[wbbK] | [wbbL], [wbbK] |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,195,035 | G→A | A246T (GCG→ACG) | metG → | methionine‑‑tRNA ligase |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,572,542 | G→A | P322S (CCG→TCG) | eutD ← | phosphate acetyltransferase EutD |
| RA | 2,623,776 | G→A | E245K (GAG→AAG) | ppk → | polyphosphate kinase |
| JC JC | 2,737,689 | IS150 (+) +3 bp | intergenic (+43/‑54) | pheL → / → pheA | phe operon leader peptide/fused chorismate mutase/prephenate dehydratase |
| RA | 2,797,777 | C→T | I86I (ATC→ATT) | ygaP → | thiosulfate sulfurtransferase YgaP |
| RA | 2,805,688 | C→T | P292S (CCT→TCT) | proV → | glycine betaine ABC transporter ATP binding subunit ProV |
| RA | 2,861,443 | C→T | S5F (TCT→TTT) | ygbJ → | putative L‑threonate dehydrogenase |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,926,292 | C→T | intergenic (+96/‑16) | queF → / → ppnN | 7‑cyano‑7‑deazaguanine reductase/nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,942,462 | C→A | A36S (GCA→TCA) | gcvA ← | DNA‑binding transcriptional dual regulator GcvA |
| RA | 2,991,238 | G→T | intergenic (‑878/‑30) | yqeK ← / → ygeG | protein YqeK/TPR repeat‑containing putative chaperone YgeG |
| RA | 3,067,757 | G→A | G108G (GGC→GGT) | yggE ← | DUF541 domain‑containing protein YggE |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,114,752 | G→A | A1454V (GCC→GTC) | yghJ ← | putative lipoprotein YghJ |
| JC JC | 3,262,484 | IS5 (+) +4 bp | coding (1174‑1177/1209 nt) | tdcD ← | propionate kinase |
| JC JC | 3,308,963 | IS150 (–) +3 bp | intergenic (‑39/+68) | nlpI ← / ← pnp | lipoprotein NlpI/polynucleotide phosphorylase |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,501,376 | G→A | E37K (GAA→AAA) | frlB → | fructoselysine 6‑phosphate deglycase |
| RA | 3,516,931 | C→T | A126T (GCC→ACC) | damX ← | cell division protein DamX |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,585,682 | C→T | G381D (GGC→GAC) | ggt ← | glutathione hydrolase proenzyme |
| RA | 3,596,463 | C→T | T366T (ACG→ACA) | livK ← | L‑leucine/L‑phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,599,496 | C→T | D55N (GAT→AAT) | livJ ← | branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,601,444 | C→T | A215T (GCG→ACG) | ftsX ← | cell division protein FtsX |
| RA | 3,603,809 | C→T | A145A (GCG→GCA) | ftsY ← | signal recognition particle receptor |
| RA | 3,613,774 | C→T | V36V (GTC→GTT) | nikA → | Ni(2(+)) ABC transporter periplasmic binding protein |
| RA | 3,629,921 | C→T | E228K (GAG→AAG) | yhiI ← | putative membrane fusion protein YhiI |
| RA | 3,630,317 | C→T | E96K (GAG→AAG) | yhiI ← | putative membrane fusion protein YhiI |
| RA | 3,649,009 | C→T | G25G (GGC→GGT) | arsB → | arsenite/antimonite:H(+) antiporter |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,761,230 | G→A | S7F (TCC→TTC) | selA ← | selenocysteine synthase |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,912,074 | G→A | S532F (TCC→TTC) | glmS ← | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,948,097 | C→T | S4S (AGC→AGT) | maoP → | macrodomain Ori protein |
| RA | 3,958,910 | C→T | S314F (TCC→TTC) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 3,960,457 | C→T | intergenic (‑644/‑220) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/ATP‑dependent DNA helicase Rep |
| RA | 3,980,122 | C→T | A56V (GCC→GTC) | rffM → | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase |
| RA | 3,981,008 | C→T | A41V (GCC→GTC) | yifK → | putative transporter YifK |
| RA | 3,981,153 | C→T | G89G (GGC→GGT) | yifK → | putative transporter YifK |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,078,842 | G→A | intergenic (+404/‑449) | fabY → / → yiiE | putative fatty acid biosynthesis enzyme FabY/putative DNA‑binding transcriptional regulator YiiE |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,123,923 | +A | coding (534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,164,339 | 2 bp→AT | coding (701‑702/1845 nt) | btuB → | cobalamin outer membrane transporter |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,225,766 | G→A | A647T (GCC→ACC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,226,790 | G→A | S988N (AGC→AAC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,279,460 | G→A | A328T (GCG→ACG) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,294,029 | G→A | A163T (GCC→ACC) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,334,910 | C→T | P227P (CCG→CCA) | eptA ← | phosphoethanolamine transferase EptA |
| RA | 4,337,045 | C→T | intergenic (‑14/+123) | adiC ← / ← adiY | arginine:agmatine antiporter/DNA‑binding transcriptional activator AdiY |
| RA | 4,337,259 | C→T | S224N (AGT→AAT) | adiY ← | DNA‑binding transcriptional activator AdiY |
| JC JC | 4,349,151 | IS2 (+) +5 bp | intergenic (‑407/+160) | dcuB ← / ← dcuR | anaerobic C4‑dicarboxylate transporter DcuB/DNA‑binding transcriptional activator DcuR |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,409,633 | G→A | G120D (GGC→GAC) | rlmB → | 23S rRNA 2'‑O‑ribose G2251 methyltransferase |
| RA | 4,409,770 | G→A | E166K (GAA→AAA) | rlmB → | 23S rRNA 2'‑O‑ribose G2251 methyltransferase |
| RA | 4,415,887 | G→A | G538E (GGA→GAA) | aidB → | putative acyl‑CoA dehydrogenase AidB |
| RA | 4,417,992 | G→A | S154S (AGC→AGT) | ulaR ← | DNA‑binding transcriptional repressor UlaR |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,427,977 | G→A | intergenic (‑555/+102) | yjfZ ← / ← ytfB | DUF2686 domain‑containing protein YjfZ/cell division protein YtfB |
| RA | 4,429,135 | G→A | E67E (GAG→GAA) | fklB → | peptidyl‑prolyl cis‑trans isomerase FklB |
| RA | 4,430,080 | G→A | A73T (GCA→ACA) | cycA → | D‑serine/alanine/glycine/:H(+)symporter |
| RA | 4,438,349 | G→A | E215K (GAA→AAA) | ytfI → | protein YtfI |
| RA | 4,439,479 | G→A | intergenic (‑217/‑108) | ytfJ ← / → ytfK | PF09695 family protein YtfJ/stringent response modulator YtfK |
| RA | 4,441,653 | G→A | A175V (GCT→GTT) | msrA ← | methionine sulfoxide reductase A |
| RA | 4,442,088 | G→A | A30V (GCG→GTG) | msrA ← | methionine sulfoxide reductase A |
| RA | 4,499,661 | T→C | intergenic (+161/‑1599) | insD6 → / → yjgZ | IS2 insertion element protein InsB/uncharacterized protein YjgZ |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| JC JC | 4,542,448 | IS5 (–) +4 bp | coding (412‑415/597 nt) | fimE → | regulator for fimA |
| RA | 4,546,262 | G→A | Q389Q (CAG→CAA) | fimD → | type I fimbriae usher protein |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,573,595 | G→A | Q394Q (CAG→CAA) | yjiT → | putative uncharacterized protein YjiT |
| RA | 4,575,254 | G→A | intergenic (+1323/+1658) | yjiT → / ← mcrC | putative uncharacterized protein YjiT/Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit |
| RA | 4,578,413 | G→A | P309S (CCC→TCC) P309S (CCC→TCC) |
mcrB ← mcrB ← |
5‑methylcytosine‑specific restriction enzyme subunit McrB 5‑methylcytosine‑specific restriction enzyme subunit McrB |
| JC JC | 4,630,718 | IS5 (–) +4 bp | intergenic (‑196/‑12) | ettA ← / → slt | energy‑dependent translational throttle protein EttA/soluble lytic murein transglycosylase |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257823 | 258675–257909 | 87–853 | 127 [0] | [0] 94 | crl–insA9 | crl,insB9,insA9 |
| * | * | ÷ | NC_000913 | 1196277 | 1211462 | 15186 | 29 [25] | [23] 29 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1411925 | 1423260–1423200 | 11276–11336 | 103 [0] | [25] 26 | [ttcA]–[ydaW] | [ttcA],intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,kilS,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,[ydaW] |
| * | * | ÷ | NC_000913 | 1423492–1423567 | 1428946 | 5380–5455 | 26 [25] | [23] 26 | [rzoR]–[lomR] | [rzoR],trkG,ynaK,ydaY,ynaA,lomR,insH5,[lomR] |
| * | * | ÷ | NC_000913 | 1429844 | 1434984 | 5141 | 26 [25] | [7] 109 | [stfR]–ynaM | [stfR],tfaR,pinR,ynaE,ynaM |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 114 [0] | [0] 113 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 2170370–2171428 | 2175000 | 3573–4631 | 26 [25] | [0] 90 | [insE5]–[gatA] | [insE5],insF5,gatR,gatD,gatB,[gatA] |
| * | * | ÷ | NC_000913 | 3423801–3424229 | 3424469–3424238 | 10–669 | 27 [24] | [25] 26 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3708467 | 3708621 | 155 | 40 [0] | [25] 30 | [proK] | [proK] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257822 | 0 (0.000) | 124 (1.300) | 83/598 | 0.0 | 100% | intergenic (+51/‑7) | frsA/crl | fermentation‑respiration switch protein/RNA polymerase holoenzyme assembly factor Crl |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 258676 = | 0 (0.000) | 64 (0.920) +81 bp |
50/436 | 0.2 | 100% | pseudogene (1/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl |
| ? | NC_000913 | = 1469241 | NA (NA) | intergenic (‑92/‑5) | insC2/ydbA | IS2 insertion element repressor InsA/putative outer membrane protein, N‑terminal fragment | |||||
| * | ? | NC_000913 | = 498521 | 84 (0.880) | 56 (0.590) | 38/598 | 1.3 | 39.0% | coding (467/963 nt) | hemH | ferrochelatase |
| ? | NC_000913 | 498928 = | 91 (0.960) | coding (874/963 nt) | hemH | ferrochelatase | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 113 (1.190) | 76/598 | 0.1 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | = 1411924 | 0 (0.000) | 102 (1.170) | 67/546 | 0.1 | 100% | coding (25/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | 1434985 = | 0 (0.000) | intergenic (‑579/+200) | ynaM/uspF | protein YnaM/universal stress protein F | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 114 (1.200) | 68/598 | 0.2 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | = 2102943 | NA (NA) | 109 (1.140) | 74/598 | 0.1 | 96.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2151151 = | 4 (0.040) | intergenic (‑166/‑34) | yegI/yegJ | putative serine/threonine‑protein kinase YegI/DUF2314 domain‑containing protein YegJ | |||||
| * | ? | NC_000913 | = 2151154 | 2 (0.020) | 110 (1.150) | 78/598 | 0.1 | 98.2% | intergenic (‑169/‑31) | yegI/yegJ | putative serine/threonine‑protein kinase YegI/DUF2314 domain‑containing protein YegJ |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2170611 | NA (NA) | 90 (0.950) | 65/594 | 0.2 | 100% | noncoding (441/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 2175001 = | 0 (0.000) | coding (49/453 nt) | gatA | galactitol‑specific PTS enzyme IIA component | |||||
| * | ? | NC_000913 | = 3708466 | 0 (0.000) | 39 (0.640) | 27/382 | 0.9 | 100% | intergenic (‑761/+150) | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| ? | NC_000913 | 3708635 = | 0 (0.000) | noncoding (58/77 nt) | proK | tRNA‑Pro | |||||