mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 62,379 | Δ25,896 bp | [rapA]–[cra] | 25 genes [rapA], polB, araD, araA, araB, araC, yabI, thiQ, thiP, thiB, sroA, sgrR, sgrS, sgrT, setA, leuD, leuC, leuB, leuA, leuL, leuO, yabR, ilvI, ilvH, [cra] |
|
| RA | 89,089 | C→A | intergenic (+57/‑545) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,103 | G→C | intergenic (+71/‑531) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,143 | A→G | intergenic (+111/‑491) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,145 | G→T | intergenic (+113/‑489) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,239 | G→A | intergenic (+207/‑395) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,241 | C→A | intergenic (+209/‑393) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,263 | A→G | intergenic (+231/‑371) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,316 | T→C | intergenic (+284/‑318) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,321 | A→G | intergenic (+289/‑313) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,471 | T→G | intergenic (+439/‑163) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,570 | A→C | intergenic (+538/‑64) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,699 | T→C | Y22Y (TAT→TAC) | mraZ → | DNA‑binding transcriptional repressor MraZ |
| RA | 89,754 | T→C | Y41H (TAT→CAT) | mraZ → | DNA‑binding transcriptional repressor MraZ |
| RA | 90,432 | A→G | E113E (GAA→GAG) | rsmH → | 16S rRNA m(4)C1402 methyltransferase |
| RA | 90,435 | T→C | R114R (CGT→CGC) | rsmH → | 16S rRNA m(4)C1402 methyltransferase |
| RA | 91,904 | G→A | E164E (GAG→GAA) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,916 | C→T | Y168Y (TAC→TAT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,922 | G→A | P170P (CCG→CCA) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,949 | C→T | I179I (ATC→ATT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,096 | A→T | A228A (GCA→GCT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,162 | C→T | N250N (AAC→AAT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,327 | G→T | P305P (CCG→CCT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,354 | A→G | V314V (GTA→GTG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,687 | A→G | P425P (CCA→CCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,810 | T→C | T466T (ACT→ACC) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,843 | A→G | P477P (CCA→CCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 94,278 | G→A | A371A (GCG→GCA) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 134,256 | G→T | intergenic (+44/‑132) | acnB → / → yacL | AcnB/PF06062 family protein YacL |
| RA | 244,565 | A→T | Q80L (CAG→CTG) | yafJ → | putative glutamine amidotransferase YafJ |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| JC JC | 288,695 | IS150 (+) +3 bp | coding (466‑468/759 nt) | xynR ← | DNA‑binding transcriptional repressor XynR |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 419,294 | A→G | intergenic (+110/‑297) | phoR → / → brnQ | sensor histidine kinase PhoR/branched chain amino acid transporter BrnQ |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 553,161 | G→A | intergenic (‑61/+57) | purE ← / ← lpxH | N(5)‑carboxyaminoimidazole ribonucleotide mutase/UDP‑2,3‑diacylglucosamine diphosphatase |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| JC JC | 789,812 | IS2 (–) +5 bp | coding (164‑168/1149 nt) | galK ← | galactokinase |
| RA | 791,688 | G→A | S123F (TCC→TTC) | galE ← | UDP‑glucose 4‑epimerase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 917,966 | G→A | M498I (ATG→ATA) | ybjD → | DUF2813 domain‑containing protein YbjD |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,003,243 | G→T | G119W (GGG→TGG) | ycbU → | putative fimbrial protein YcbU |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| JC JC | 1,093,481 | IS2 (+) +5 bp | coding (606‑610/1359 nt) | dgcT → | putative diguanylate cyclase DgcT |
| RA | 1,100,070 | G→A | C144Y (TGT→TAT) | ycdY → | chaperone protein YcdY |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,123,556 | C→T | E167K (GAA→AAA) | grxB ← | reduced glutaredoxin 2 |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,325 | A→G | K401K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| JC JC | 1,301,050 | IS1 (+) +9 bp | intergenic (+503/‑124) | insH21 → / → oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,331,947 | C→T | G300G (GGC→GGT) | topA → | DNA topoisomerase 1 |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,412,897 | G→A | L113L (CTC→CTT) | intR ← | putative integrase |
| RA | 1,428,087 | C→T | E214K (GAG→AAG) | insH5 ← | IS5 family transposase and trans‑activator |
| JC JC | 1,434,343 | IS5 (+) +4 bp | coding (61‑64/114 nt) | ynaM ← | protein YnaM |
| RA | 1,437,145 | T→A | noncoding (25/111 nt) | micC → | small regulatory RNA MicC |
| MC JC | 1,588,756 | Δ970 bp | [ydeS]–[ydeT] | [ydeS], [ydeT] | |
| RA | 1,598,172 | T→G | intergenic (‑5730/+445) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,610,076 | T→G | D202A (GAT→GCT) | uxaB ← | tagaturonate reductase |
| RA | 1,610,440 | C→T | E81K (GAA→AAA) | uxaB ← | tagaturonate reductase |
| RA | 1,632,837 | A→G | intergenic (‑552/‑53) | ydfJ ← / → ynfT | putative transporter YdfJ/protein YnfT |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| JC JC | 1,651,851 | IS2 (–) +5 bp | intergenic (+1866/+873) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| MC JC | 1,704,350 | Δ390 bp | blr | blr | |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,738,377 | C→T | H178H (CAC→CAT) | purR → | DNA‑binding transcriptional repressor PurR |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,856,968 | T→A | I268F (ATT→TTT) | ydjI ← | L‑glycero‑L‑galacto‑octuluronate‑1‑phosphate aldolase |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,975,224 | G→A | A34V (GCG→GTG) | cheA ← | chemotaxis protein CheA |
| JC | 1,977,451 | (CTGGAAAGTTGCAG)1→2 | coding (394/579 nt) | flhC ← | DNA‑binding transcriptional dual regulator FlhC |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 2,003,276 | A→C | S111A (TCT→GCT) | fliC ← | flagellar filament structural protein |
| RA | 2,003,462 | C→A | A49S (GCG→TCG) | fliC ← | flagellar filament structural protein |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,175,991 | T→A | K111* (AAG→TAG) | gatZ ← | putative tagatose‑1,6‑bisphosphate aldolase 2 chaperone |
| RA | 2,178,759 | G→C | intergenic (‑195/‑62) | fbaB ← / → yegT | fructose‑bisphosphate aldolase class I/putative transporter YegT |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| MC JC | 2,238,416 | Δ19 bp | coding (856‑874/1521 nt) | mglA ← | D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit |
| RA | 2,263,441 | Δ1 bp | coding (55/1131 nt) | fruB ← | fructose‑specific PTS multiphosphoryl transfer protein FruB |
| JC JC | 2,382,507 | IS1 (+) +9 bp | coding (900‑908/918 nt) | rbn → | ribonuclease BN |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,700,747 | G→A | L84L (CTC→CTT) | acpS ← | holo‑[acyl‑carrier‑protein] synthase |
| RA | 2,748,396 | G→A | A145A (GCG→GCA) | ypjD → | cytochrome c assembly family protein |
| RA | 2,756,976 | G→A | R273Q (CGA→CAA) | intA → | integrase IntA |
| RA | 2,780,060 | G→A | H889H (CAC→CAT) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,792,209 | G→A | V313M (GTG→ATG) | gabD → | succinate‑semialdehyde dehydrogenase (NADP(+)) GabD |
| RA | 2,800,435 | G→A | G97D (GGT→GAT) | ygaM → | DUF883 domain‑containing protein YgaM |
| JC JC | 2,805,802 | IS1 (+) +9 bp | coding (988‑996/1203 nt) | proV → | glycine betaine ABC transporter ATP binding subunit ProV |
| RA | 2,810,925 | G→A | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator MprA |
| RA | 2,817,850 | G→A | noncoding (11/77 nt) | argQ ← | tRNA‑Arg |
| RA | 2,823,288 | C→T | G161D (GGC→GAC) | recA ← | DNA recombination/repair protein RecA |
| RA | 2,863,773 | C→T | L61F (CTT→TTT) | ygbL → | putative 3‑oxo‑tetronate 4‑phosphate decarboxylase YgbL |
| RA | 2,878,077 | C→T | intergenic (+459/+492) | iap → / ← cas2 | alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
| RA | 2,889,365 | C→T | K245K (AAG→AAA) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 2,905,825 | C→T | Q39* (CAA→TAA) | ygcG → | TPM domain‑containing protein YgcG |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,926,292 | C→T | intergenic (+96/‑16) | queF → / → ppnN | 7‑cyano‑7‑deazaguanine reductase/nucleotide 5'‑monophosphate nucleosidase |
| JC | 2,942,765 | Δ8 bp | noncoding (70‑77/206 nt) | gcvB → | small regulatory RNA GcvB |
| RA | 3,028,546 | G→A | A156V (GCC→GTC) | ygfS ← | putative electron transport protein YgfS |
| RA | 3,050,472 | G→A | L66L (CTG→TTG) | gcvT ← | aminomethyltransferase |
| RA | 3,061,916 | C→T | A356V (GCC→GTC) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,065,449 | G→A | L216L (TTG→TTA) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,065,861 | G→A | V354I (GTC→ATC) | scpC → | propionyl‑CoA:succinate CoA transferase |
| JC JC | 3,078,723 | IS5 (+) +4 bp | coding (134‑137/1389 nt) | cmtA ← | mannitol‑specific PTS enzyme IICB component CmtA |
| RA | 3,089,260 | T→C | V326A (GTG→GCG) | galP → | galactose:H(+) symporter |
| RA | 3,090,968 | G→A | E208K (GAG→AAG) | endA → | DNA‑specific endonuclease I |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,367,944 | G→A | A40T (GCG→ACG) | yhcG → | DUF1016 domain‑containing protein YhcG |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,399,929 | A→T | L17Q (CTG→CAG) | mreC ← | cell shape determining protein MreC |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,449,779 | G→A | S35S (AGC→AGT) | rpsC ← | 30S ribosomal subunit protein S3 |
| RA | 3,468,768 | C→T | W362* (TGG→TGA) | chiA ← | endochitinase |
| RA | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,543,877 | G→A | P237P (CCG→CCA) | rpnA → | recombination‑promoting nuclease RpnA |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,629,921 | C→T | E228K (GAG→AAG) | yhiI ← | putative membrane fusion protein YhiI |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,696,909 | G→A | G151E (GGA→GAA) | bcsE → | c‑di‑GMP‑binding protein BcsE |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,761,230 | G→A | S7F (TCC→TTC) | selA ← | selenocysteine synthase |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,883,678 | G→A | P18S (CCA→TCA) | dnaA ← | chromosomal replication initiator protein DnaA |
| RA | 3,912,074 | G→A | S532F (TCC→TTC) | glmS ← | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,931,069 | C→T | E9K (GAA→AAA) | ravA ← | regulatory ATPase RavA |
| JC JC | 3,938,983 | IS2 (–) +5 bp | coding (757‑761/993 nt) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| RA | 3,955,304 | C→T | R609R (CGC→CGT) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 3,988,115 | C→T | D318N (GAT→AAT) | hemX ← | PF04375 family protein HemX |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| JC JC | 4,069,379 | IS1 (+) +9 bp | intergenic (‑103/+88) | yihQ ← / ← yihR | sulfoquinovosidase/putative sulfoquinovose mutarotase YihR |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,210,041 | G→A | intergenic (+192/‑2) | gltV → / → rrlE | tRNA‑Glu/23S ribosomal RNA |
| RA | 4,272,878 | C→G | V332L (GTC→CTC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,276,716 | G→T | G416C (GGT→TGT) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| JC JC | 4,289,448 | IS1 (+) +9 bp | coding (204‑212/567 nt) | nrfB → | periplasmic nitrite reductase penta‑heme c‑type cytochrome |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,337,390 | C→T | K180K (AAG→AAA) | adiY ← | DNA‑binding transcriptional activator AdiY |
| RA | 4,338,916 | C→T | V536I (GTC→ATC) | adiA ← | arginine decarboxylase, degradative |
| RA | 4,349,993 | C→T | A14A (GCG→GCA) | dcuR ← | DNA‑binding transcriptional activator DcuR |
| RA | 4,375,354 | G→A | P102S (CCT→TCT) | epmB ← | lysine 2,3‑aminomutase |
| RA | 4,380,367 | C→T | D51N (GAC→AAC) | frdB ← | fumarate reductase iron‑sulfur protein |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,436,956 | 2 bp→TT | coding (202‑203/741 nt) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| JC JC | 4,452,701 | IS150 (+) +3 bp | coding (131‑133/1026 nt) | ytfT → | galactofuranose ABC transporter putative membrane subunit YtfT |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 339199 | 358972 | 19774 | 66 [1] | [7] 8 | [yahG]–[cynT] | [yahG],yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,[cynT] |
| * | * | ÷ | NC_000913 | 372291 | 374020 | 1730 | 8 [7] | [7] 8 | [mhpD]–[mhpE] | [mhpD],mhpF,[mhpE] |
| * | * | ÷ | NC_000913 | 1196352 | 1211448 | 15097 | 8 [7] | [7] 8 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978503 | 9–776 | 39 [0] | [1] 41 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423870–3424233 | 3424426–3424238 | 6–557 | 8 [7] | [7] 9 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4540716 | 4551780 | 11065 | 8 [7] | [7] 8 | fimB–[uxuA] | fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH,gntP,[uxuA] |
| * | * | ÷ | NC_000913 | 4551789 | 4557116 | 5328 | 8 [7] | [7] 8 | [uxuA]–[iraD] | [uxuA],uxuB,uxuR,yjiC,ytiC,ytiD,idlP,[iraD] |
| * | * | ÷ | NC_000913 | 4557183 | 4597432 | 40250 | 8 [7] | [0] 12 | [iraD]–[opgB] | [iraD],hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,ytiE,yjiR,yjiS,yjiT,mcrC,mcrB,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD,[opgB] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 339198 | 1 (0.020) | 65 (1.160) | 56/482 | 0.1 | 95.6% | coding (874/1419 nt) | yahG | DUF1116 domain‑containing protein YahG |
| ? | NC_000913 | 375418 = | 5 (0.090) | intergenic (+537/‑41) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter | |||||
| * | ? | NC_000913 | = 366180 | 2 (0.040) | 55 (0.970) | 49/490 | 0.2 | 94.0% | coding (126/3075 nt) | lacZ | beta‑galactosidase |
| ? | NC_000913 | 366274 = | 5 (0.090) | coding (32/3075 nt) | lacZ | beta‑galactosidase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 40 (0.710) | 38/482 | 0.5 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 39 (0.680) | 35/490 | 0.6 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 1 (0.020) | 40 (0.700) | 35/490 | 0.6 | 97.6% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||