| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 97.9% | 170.1 / ‑3.9 | 48 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base G (22/25); minor base T (1/0); total (23/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
TCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGG‑TGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCAT > NC_000913/3560206‑3560663 | tcttctTTTACCATCAAAGTGTTAGCAACGTTAAGCTTGTTGG‑TGACACTGCGCAAATTACAGTGCTTGAGCCGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGGGCCACTGGTGCTTTTCTCCGCCCCTTTGCGGGAGCTCCGCTCTTTTCCTTCGGGCTGGGTGT‑CCTTGCGATCGTGCC‑ACGGCGAGTTAACCGACCTGGCAGG‑AAGCGCCGCACCGCCATGATGGc‑c > 2:30831/1‑251 (MQ=255) tttcacctcaaaCGTGTTCGCAAGTTTGAGAT‑GTTGGGTGAAAAGGCACAATTTGTTGTGATGGGGCAGTGCGTGCCCTCCCGTTTCCGGCGTGGTGCGGATATCGATAAACGGCGCCGACCCATGGGGGATTTGCCCCGCCACTTTGCGGGCGAGGCGCTCTTTTTCTCCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGcgcagg < 2:55021/240‑6 (MQ=255) ccATCAACGTGTTAGCAACGTTGAGATTGTTGG‑TGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGCTGGCGCAGGATCAgg > 1:52339/1‑251 (MQ=255) aaCGTGTTAGCAACGTTGAGATTGTTGG‑TGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACAGCCATGATGGCGCAGGATCAGGTTTTg > 2:388718/1‑251 (MQ=255) atgatAGCAACCTTGAGATTGTTGG‑TGCCAATGCGAAAATTGCTGTGATTCAGAAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATACCGATAAACAGCGACGCGCCATTGGGGCTTTGCTCCGCCACTTTGCGGGCGATGCGCACTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCAAGATGGCGAAGGATCCTGTTTTGCTc > 2:366309/5‑251 (MQ=255) aTTGTTGG‑TGACAATGCGCAAATTGCTGTGATTGCGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGt > 1:428423/1‑251 (MQ=255) gACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGCACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGGTTTGCGCCGCCAGCTCATTGAGGACGCGCCGa > 2:384444/1‑250 (MQ=255) aaataTTGCTGTGATTGAGCAGGGCGGGCTCTCCCGTTTCCGGGGTGGGGCGGATATCTATAACCGGCGTCGAGCCTTTGGGGATTGGCCCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGc < 1:84920/247‑1 (MQ=255) aaaaTGGCTGTGTTTGAGCGGGGCGGGCGCTACCGCTCCCGGCGGGGTGCCGAAACCAATAAACGGCGTGGAGCCATGGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCg < 1:455970/250‑1 (MQ=255) gATTGCGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGAGGTCGCGGCGAATAGTCTTCGGGCTGACgggg > 2:468844/1‑249 (MQ=255) gCAGTGCGCGCGCTACCGTTTCCGGGGGGGTGCCGATAGCGTTAAACAGCGTCGAGCCATTGGGGTTTGGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGc < 1:509658/251‑1 (MQ=255) gtgcgCTCCCGCTTCCGGCGTGGTGCGGATACCAATAAACGGCGCCGAGCCATTGGGGATTTGCTCCGCCACTTGGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCa < 1:479889/251‑1 (MQ=255) gtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑cc > 1:245153/1‑250 (MQ=255) gggcgctacggctccggggggggtgCAGATATAGATAAAAAGGGGCGAGCTAGTGGGGTTTGGCCCCGCCACTTTGCGGGCGAGGCGCTCTTTTTCTTCGGTCGGGGTGG‑CCTTGCGATCGTGCC‑ACGGGGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCa < 1:391212/230‑1 (MQ=255) gCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGa > 1:285566/1‑196 (MQ=255) tcgggCGTGGTGCGGATAGGGAAAAACAGCGTGGAGCCATGGGGGATTTGCTCCTCCACTTTGCGGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGG‑CCTTGCGTTCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CGGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTa < 1:509876/246‑1 (MQ=255) cGGCGTGGTGCCGATATCGATAAACAGCGTCGCGCCATTGGGGCTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGGGTTAACCGAACTGGACGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCCGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGCATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCCGCTCTTCGGTACTg > 2:58455/1‑250 (MQ=255) gtgCCGATATCGCTAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAAcc > 2:5432/1‑251 (MQ=255) tatCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTACTTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACCTTACCCTGCTGt > 1:330440/1‑251 (MQ=255) aTAAACAGCGTCGAGCCATTGGGGATTTGCCCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CATCGCGGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCCGCTCATTGAGGTAGCGTCGAAAAGTATGCTGGTAGACGGTGAACTTCTCTAACCA‑CTCTTCGATACTTACATAACCCTGCTGTTTAAc > 2:517225/1‑251 (MQ=255) aGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataat > 1:466161/1‑250 (MQ=255) gCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGAGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAc > 1:539445/1‑251 (MQ=255) tgggggattgcccccGCCACTTTGCGGGCGATGCGCTTTTTTTCTTCGGTCGGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCg < 1:120860/236‑1 (MQ=255) gggggttgtgccccGCCACTTTGGGGGCGATGCGCTCTTTTTCTGCGGTGTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCAAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGtt < 1:579791/238‑1 (MQ=255) cgccgccgcttggggggCGATGCGCTCTTATCCTT‑GGTTTGGGGGGGCCTTGCGAGCGCGCC‑ACGGCGTGGTAACCGAATGGGAAGT‑CCGCGCCCCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTGCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTtgtg < 2:205561/237‑1 (MQ=255) cccGCCACTTGGGGGGCGATGCGCTCTTTTTCTTGGGGCGGGGTGG‑CATAGCGTGCGTGCC‑CGGGCGGGTTAACAGAACGGGAAGG‑CTGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCGCCGCCAGCTCATTGAGGTCGCGGCGAATAGGCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCGTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGGTGTGACGTTgtgt < 2:31196/250‑1 (MQ=255) cccccctgtggCGGGCGAGGCGCTCTTTTGCTGCGGTTGGGGGGG‑CCTGGCGATCG‑GCCGACGGGGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtt < 2:200843/241‑1 (MQ=255) ccGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtt < 1:140964/251‑1 (MQ=255) cgccacggtGCGGGCGATGCGCTCTTTTTCTTCGGTGTGGGTGG‑TCTAGCGACCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATTGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACAGTTGTGACGTTGtgttt < 1:58455/243‑1 (MQ=255) ccccccttggCGGGGGATGGGCTCTTTTTCTTGGGTTGGGGTGG‑CCTTGCGTTCGTGCC‑TCGGGGTGTTACCCGAACTGGAAGG‑ACGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgttt < 2:176636/242‑1 (MQ=255) ttgcgggctatgagtcctTTTTTTACGGTCTGGGTGG‑CCGTGCGATCGTGCC‑ACGGCGTTTTAACCGAACTGGAAGG‑CAGCGCTGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATCCCGTTGTGACGTTGTGTTTGTTTCa < 1:402125/234‑1 (MQ=255) gCGAGGCGCTCTTTTTCTTCGGTCGGGGTGG‑CCTTGCGATCGTGCC‑ACGGCTTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATaa < 1:388116/251‑1 (MQ=255) gATGCGCTCTTTTTCTTCGGTTTGGGGGG‑CCTTGCGTTCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgt < 2:410113/224‑1 (MQ=255) gATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgt > 1:410113/1‑224 (MQ=255) cgcTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGGGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCt < 1:5432/251‑1 (MQ=255) ctctTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAcc > 1:523420/1‑213 (MQ=255) ctctTTTTCTTCGGTCGGGGGGG‑CCTGGCGACCGGGCC‑GCGGCGTGTTAACCAAACTGGAAGG‑CGGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAcc < 2:523420/213‑1 (MQ=255) tctTTTTCTTCGGTCTGGGTGG‑CCTTGAGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTgg > 2:340119/1‑250 (MQ=255) cttcGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttt > 1:443916/1‑251 (MQ=255) gTCTGGGGGG‑CCTTGCGATCGGTCC‑TCGGGTTTTTAACCGAACGGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgtt < 1:465473/251‑1 (MQ=255) gTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACg > 1:277340/1‑203 (MQ=255) gcgctcgggCC‑ACGGGGTGTAACCCGAGCTGGAGGG‑CGGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAg < 2:15097/242‑1 (MQ=255) gcggccc‑ACGGGGTGTTAACCGAACGGGAGGC‑CGGCGCCGCCCCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 2:448872/246‑1 (MQ=255) tGCC‑ACGGCGTGTTCACCGAACTGGCAGG‑CAGCGCCGCACCGCCATGATGGCTCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGATCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGTTAATACCGTTGTTACGTTGTGTTTTTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCTTTGacctcatca > 2:489881/1‑242 (MQ=255) gCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CCGCTCCGGTCCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaac < 1:312278/251‑1 (MQ=255) gCC‑ACGGCGTGTTAACCGAAC‑GGAAGGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaac < 2:51890/251‑1 (MQ=255) cc‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaac > 1:24447/1‑250 (MQ=255) cc‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGATCATTGAGGTCGAGGCGAATCGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGCTAATACCGTTGTGACGTTGTGTTTGTTTAATTTATAAATCCCTGGAATTATTTTCGTTTTAGCGCATTGATCGAATcaac > 1:342913/1‑250 (MQ=255) aCGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAACGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaacaa > 1:139856/1‑250 (MQ=255) gtgaaCCTAACTGGAAGC‑CGGGGCCGCCCCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCAt < 1:166956/247‑1 (MQ=255) | TCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGG‑TGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCC‑ACGGCGTGTTAACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTA‑CCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCAT > NC_000913/3560206‑3560663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |