New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	1 (0.020)	40 (0.700)	35/490	0.6	97.6%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

CCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG  >  NC_000913/1979022‑1979505                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                           gggttccagcggagaaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCa                                                                                                                                                                                                                                           >  2:15762‑M1/250‑251 (MQ=255) ccAACGCCATTCAGGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGGGAACGGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTGTTGCCGTTACGCACCACCCCGGCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCa                                                                                                                                                                                                                                           <  2:51799/251‑1 (MQ=2)    ttccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATa                                                                                                                                                                                                                                         >  1:266119‑M1/247‑250 (MQ=255)           ggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGtat                                                                                                                                                                                                                                  <  2:77926‑M1/11‑1 (MQ=255)                  gtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATa                                                                                                                                                                                                                          >  1:24027‑M1/233‑251 (MQ=255)                       cggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACtttt                                                                                                                                                                                                                     <  2:173808‑M1/24‑1 (MQ=255)                               accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTggg                                                                                                                                                                                                             >  1:500525‑M1/220‑251 (MQ=255)                               accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTggg                                                                                                                                                                                                             >  1:210247‑M1/220‑251 (MQ=255)                                ccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTggg                                                                                                                                                                                                             >  1:380497‑M1/219‑250 (MQ=255)                                          ggtaaaacggcgcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaagttaagttgatgactcatgatgaatcctgttctatggttccatatgacaaacatgatctcatatctgggtcttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                                                                                                  >  2:85288‑M1/209‑251 (MQ=255)                                             aaaacggctcgatgaattaaaccctgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgcaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatcccatatcagggacttcttcgcccctttcttaaCATAAATGATTAAGTTATACTTTTGTTTTGGGTGTATTTCAATctt                                                                                                                                                                                               <  2:119412‑M1/46‑2 (MQ=255)                                               aacggctcgatgactgccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaatgcactttcggcgaaggtaagttgatgactcatgatgaatccttttctatggcgccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTTTGTTGGGTGTATTTCATTCTGtt                                                                                                                                                                                             >  2:375221‑M1/204‑251 (MQ=255)                                                acggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                                                                                                            >  2:148226‑M1/203‑251 (MQ=255)                                                      cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                                                                                                        >  2:374689‑M1/197‑249 (MQ=255)                                                      cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                                                                                                       >  1:265249‑M1/197‑250 (MQ=255)                                                          gtctcccatcatgtttttccatggcagcatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaagtcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCACTCTGTTAAAAAGttttt                                                                                                                                                                                  >  2:390298‑M1/193‑251 (MQ=255)                                                          gacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                                                                                                                  >  2:496026‑M1/193‑251 (MQ=255)                                                                   catgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                                                                                                         >  1:316819‑M1/184‑251 (MQ=255)                                                                    atgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                                                                                                         <  1:412606‑M1/68‑1 (MQ=255)                                                                     tgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                                                                                                         <  1:509619‑M1/68‑1 (MQ=255)                                                                           gccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagca                                                                                                                                                                 >  1:154673‑M1/176‑251 (MQ=255)                                                                           gccatggcagaatctgcgccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCtagcaagt                                                                                                                                                                  >  2:96306‑M1/176‑249 (MQ=255)                                                                                   agaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                                                                                                                         >  1:165449‑M1/168‑251 (MQ=255)                                                                                             ccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                                                                                                                 >  1:209549‑M1/158‑249 (MQ=255)                                                                                              catgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                                                                                                              >  1:157520‑M1/157‑251 (MQ=255)                                                                                                        aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                                                                                                                    >  2:496169‑M1/147‑251 (MQ=255)                                                                                                                    tttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                                                                                                         >  2:124336‑M1/135‑250 (MQ=255)                                                                                                                     ttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                       <  1:32424‑M1/118‑1 (MQ=255)                                                                                                                              gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAc                                                                                                              <  1:194541‑M1/127‑1 (MQ=255)                                                                                                                               acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctttcttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt                                                                                                             >  1:502334‑M1/124‑251 (MQ=255)                                                                                                                                                             gaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCGCCGTAAATAATCATCTGCTATAaataat                                                                               >  1:108592‑M1/94‑251 (MQ=255)                                                                                                                                                                             ctcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAc                                                               <  1:577013‑M1/174‑1 (MQ=255)                                                                                                                                                                                           tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAttt                                                 <  1:370925‑M1/188‑1 (MQ=255)                                                                                                                                                                                                tatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTaa                                             >  2:184713‑M1/59‑250 (MQ=255)                                                                                                                                                                                                   ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACa                                          >  1:339898‑M1/56‑250 (MQ=255)                                                                                                                                                                                                          gatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACtt                                   <  1:318683‑M1/202‑1 (MQ=255)                                                                                                                                                                                                                       atcttatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACaaa                      >  1:137893‑M1/36‑250 (MQ=255)                                                                                                                                                                                                                                cagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAAt            >  2:509619‑M1/27‑251 (MQ=255)                                                                                                                                                                                                                                    gacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACa         <  1:33512‑M1/228‑1 (MQ=255)                                                                                                                                                                                                                                         gttcgcatattccttaaAATAAAAGTATAAGTCATACTTGTGTTTTTGGTGTATATCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAACGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTCTCATGCAAAACAAGATAAGCTATTTTTAAACAGACACTGACCGCACAACAAACTAATGAAAtacaaatat    >  2:168623‑M1/18‑247 (MQ=255)                                                                                                                                                                                                                                           tcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCTCACAACAAACTAATTAAATACaaagaaag  >  1:173456‑M1/16‑250 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                           CCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG  >  NC_000913/1979022‑1979505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.