| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,003,243 | G→T | G119W (GGG→TGG) | ycbU → | putative fimbrial protein YcbU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,003,243 | 0 | G | T | 91.2% | 98.0 / NA | 35 | G119W (GGG→TGG) | ycbU | putative fimbrial protein YcbU |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base T (14/17); total (17/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGGGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACGGATAATCTGGATTCTGTTCTTATTGGGATTAACGTGG > NC_000913/1002993‑1003486 | gAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTCGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑GATGGCAACgg > 1:496696/1‑251 (MQ=255) cGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTTCTCAAACTAACTGACACAGGCGGAAGAGGGGG‑TATGGCCACGGGGATTGCCg > 1:448992/1‑251 (MQ=255) cATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAACTTCTTGATGCGCAAAGTCAGCAAGa > 1:65258/1‑250 (MQ=255) cAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATccc < 1:439704/251‑1 (MQ=255) cAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATccc > 1:704/1‑251 (MQ=255) tGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGGGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTTATGCGCCAAGTCAGCAAGAAATCCCGCTCAATCAGGTcc > 1:515794/1‑251 (MQ=255) aTTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCct < 1:514707/251‑1 (MQ=255) gTGATTTTCAGGCCGCGAATACCGGAATCACTGCTGCTGATTTGAATATCGATTGCACCGTGTGGGCCGCTGGTATTACTGGCGCGGACGCCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATCGCAACGGGGATTGCCGTGCAAATTCTTGATGCTCAAAGTCAGCAAGAAATCCCGCTCAATCCGGTCCAGCCTCTTACGCCCTTa < 2:21696/251‑1 (MQ=255) cAGGCCGAGAATACTGTAAGCCATGCTGCTGGTTTTAATATCGATATCACCGGTTGTGCTGCTGGTATTACTGGCGCGGCCGTCCTTTTTAGCGGCGAGGGTGACCCCCCTGCGGCGAAACCGGTCAAACTAACTGACACAGGCGGAAGCGGTGGGTA‑GGCCACGGAGTTTGCAGTGCCAATTATTGCTGCGCACAGGCAAAAAGAAATCACCCCCAATCCGGTCCACCCTCTTCCACCCTTTAAAGctgg > 2:240034/1‑248 (MQ=255) cgcgAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGCCCCAGGCGGAAGCGGTGG‑TAAGGCAACGTGGATTGCCGTGCAAATTCTTGTAGCGCAAAGGCAGCAAGAAATCCCCCTCCATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGAt > 2:497549/1‑250 (MQ=255) cgAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCGCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAac < 2:515794/251‑1 (MQ=255) aGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAata < 1:339852/251‑1 (MQ=255) cACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTGTTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGGAGCGTGGG‑GATGGCAACGTGGATTGCCCGGCAAATTTTTGGTGCGCCAAGTCAGCAAAAAATCCCGCTCCATCAGGGCCACCCCCTTAAGCCCTTAAAAGCCGGGGGTAACACACCCAAatac > 2:43595/1‑249 (MQ=255) ctgctgctgATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGCCAACCTTGAGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAACTTATTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCa > 1:550877/1‑250 (MQ=255) gttggtttGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACTCAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAAGCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACtt < 2:119667/244‑1 (MQ=255) gATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGACGCGGTGG‑TATGGCAACGTGGATTGCCGTGCacat > 1:574318/1‑149 (MQ=255) gATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGtt < 1:79655/250‑1 (MQ=255) atatCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGGGG‑TATGGCACCGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAACCTCTTACGCCCTTAAAAGCCGGGGGTAAAACACTCCAATATCAACTTCGTTATAAGTcc > 1:543860/1‑251 (MQ=255) atatCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGGGCAAATTCTTTATGCGCAAAGTCAGCAAGAAATCCCGCCCAATCAGGTCCAACCTCTTACGCCCTTAAAAGCCGGGGATAAAACACCCCAAAATCAACTTCGTTATAAGTCCCCaaa > 2:485834/1‑250 (MQ=255) cACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCg < 2:528157/250‑1 (MQ=255) aCCGGTTGCGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACCCCCCTGCGCCGCCACTGCTCAACCTAACTGAAGCAAGCGGAAACGGGGG‑TATGGCAACGCGGGTTGCCCTGGCAATTCTTGTTGCGGAAAGTCAGCAAGAGATCCCCCTCAACCAGGGCCAGGCTCTTTCGCCCTTAAAAACCGGGGATAACACCCTCAAAAATCCACATAGTTTTAAGTCCACAAAgggggg > 2:548546/1‑251 (MQ=255) tgCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCCACGTGGATTGCCGTGCCAATTCTTGATGCGCAAAGGCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAACCGGGGATAACACACTCAAATATCCACTTCGTTATAAGTCCACAAAGGCGGGAGCCACgg > 2:137608/1‑251 (MQ=255) gCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACggg < 2:346740/251‑1 (MQ=255) cgGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGAGGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACGCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGtt < 2:319222/251‑1 (MQ=255) cGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCCACGTGGATTGCCGTGCAAATTCTTGCTGCGCAAAGGCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAAATTCGTTATAAATCCACAAAAGCGGGCGCAAGGGGAGGGAATGCGTcggcggattgct > 2:7277/1‑245 (MQ=255) aGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCt < 1:441035/251‑1 (MQ=255) gCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCcaca < 2:32830/192‑1 (MQ=255) gCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCcaca > 1:32830/1‑192 (MQ=255) gCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCa < 2:543860/251‑1 (MQ=255) acacTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGa < 1:497758/251‑1 (MQ=255) gCTCAAACTAACTGACACAGGCGGACGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAAc < 2:390144/249‑1 (MQ=255) aaaCTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGTCGGGTTTCTAATTTTTTCATGTTTACCCGTGAAgggggggtgtttgaaaggaaa > 2:505263/1‑231 (MQ=255) actGACACAGGCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACGGATAATCTGGa < 1:297049/251‑1 (MQ=255) gCGGAAGCGGTGG‑TATGGCAACGTGGATTGCCGTGCAAATTCTTGACGCGCAAAGTCAGCAAGAAATCCCGCTCAATCTGGTCCAGCCTCTTACTCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACGGATAATCTGGATTCTGTTCtt < 2:41091/251‑1 (MQ=255) cGGTTG‑TATGGCAACGTGGATTGCCGTTCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCGTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACGGATAATCTGGATTCGGTTCTTATTGGGa < 2:448992/251‑1 (MQ=255) ggCAACGTGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTAATTTGATTTGGTTTACCCGTGAAGGGGGGTTGTTTGAACGGATAATTTGGATTCTGTTTTTTTTGGGTTTatagtgg > 2:131904/1‑245 (MQ=255) | GAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACAGGCGGAAGCGGTGG‑TATGGCAACGGGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACGGATAATCTGGATTCTGTTCTTATTGGGATTAACGTGG > NC_000913/1002993‑1003486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |