| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,987,499 | 0 | C | A | 87.5% | 90.4 / 1.0 | 32 | intergenic (+71/+8) | ftnB/yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| Reads supporting (aligned to +/- strand): ref base C (3/1); new base A (12/16); total (15/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCAACGGGCG‑CGATTACATCGAGA‑ACATCCAGAATTTGTTTGATAACCAACTGGCAAGCAACCACATCAGAAACCAAT > NC_000913/1987257‑1987729 | gAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGAAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGAGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGtttttt > 1:325471/1‑251 (MQ=255) aaTGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCCTGCTGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGACACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGACTGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGCAACCGCTGCCTCATCTGTTTGAAGCAGAGGttttttt > 1:294175/1‑251 (MQ=255) gatTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATgg < 1:272963/250‑1 (MQ=255) ttCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTggg < 2:125026/250‑1 (MQ=255) cgcgATCTGGAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGAGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGTGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCCCCCTGTGGGGTACACt > 2:321838/1‑251 (MQ=255) gATCTGGAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTg > 1:20515/1‑250 (MQ=255) ggAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAg < 1:145956/247‑1 (MQ=255) agcagcATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAATCTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGAt < 1:372406/251‑1 (MQ=255) agcaTGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGc > 2:430669/1‑251 (MQ=255) ggTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTgg > 1:332849/1‑250 (MQ=255) tgctgcAAACCAGTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGGGCCCTGTGCAGACCGACCAACATGTTCGGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACGTGAGTTCAATAAGCGCGATGGCCTTTTGGATTGccc < 2:278856/250‑1 (MQ=255) tGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGCATGTCGTGTCACACCAGCTGCATTGATCATCCTCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATATGTTTGAAGCAGCGGTTTTTTTAATGGGATTCCCCCTGTGGGGAAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATCGTGACCGGGTCTGCGGCGGCGGGTTgg > 2:386272/1‑251 (MQ=255) gCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATgg < 1:226857/250‑1 (MQ=255) cGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAAGGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACCTTAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTATTAAAGTc < 2:372519/251‑1 (MQ=255) aTGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGata < 1:462671/250‑1 (MQ=255) accAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCt < 1:258753/241‑1 (MQ=255) accAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCt > 2:258753/1‑241 (MQ=255) tCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACg > 1:102632/1‑250 (MQ=255) gTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGcggcggcgg < 2:554986/194‑1 (MQ=255) gTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGcggcggcgg > 1:554986/1‑194 (MQ=255) ccacCAGCGGCATTAATCATCATCGGCGCTAATGCAGTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGGTCAATAAGCGCGATGGCTTTTTGGATTTCCCGCATGGTGACCGGGTCTGCGGCGGTGGGATGGTTAGTAAAGTCGATATTCGTCAGCTGACTTGACATTTTTTCACGAACTTCAACTGGcg‑cg < 2:80260/250‑1 (MQ=255) cacCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCGACGGGcg‑cg > 1:554701/1‑250 (MQ=255) tGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGACACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACg > 1:333345/1‑227 (MQ=255) tGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTGTTAATGGGATTCACCCTGTGTGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACg < 2:333345/227‑1 (MQ=255) catcatccggccTAATGCATTGCTCCGATGAAGGTGTTTAGAAACCGCGGCCTTATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATGCACCCTGTGGGGTAAACTTGAGGTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGTTTAGTAAAGGCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCAACGGGCG‑CGATTACATCGAGA‑ACATc < 2:516766/240‑1 (MQ=255) ggCGCTAATGCGTTGCGCCGATGAAGGTTTTGAGAAACCGCTGACTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTAGGGTAAAATTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGACCGCATGTTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCATCGGGAG‑CGTTTACATCGAGA‑ACATACAGAAtt > 1:421019/1‑251 (MQ=255) ggCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCAACGGGCG‑CGATTACATCggga > 2:511646/1‑236 (MQ=255) ggCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTGTTCACGAACTTCAACGGGCG‑CGATTACATCgaga < 1:511646/239‑1 (MQ=255) ccGATAAAGGGTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCCGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCTCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGACTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGATGACTGGACAATTTTTCACGGACTTCCCCGGGCGACG‑TTACATCG‑GAGACATCCAGAATTTGTTTGATAAACAACTg > 2:301836/1‑251 (MQ=255) gAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCAACGGGCG‑CGATTACATCGAGA‑ACATCCAGAATTTGTTTGATAACCAACTGgcaa < 1:576904/250‑1 (MQ=255) aaaCCGCTGCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCAACGGGCG‑CGATTACATCGAGA‑ACATCCAGAATTTGTTTGATAACCAACTGGCAAGCAACCACATCAg < 1:8578/251‑1 (MQ=255) gCCTCATCTGTTTGAAGCAGAGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTGCAGCTGACTGGACATTTTTTCACGAACTTCAACGGGCG‑CGATTACATCGAGA‑ACATCCAGAATTTGTTTGATAACCAACTGGCAAGCAACCACATCAGAAACCAAt < 2:244041/251‑1 (MQ=255) | GAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATTGCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTTGGATTGCCCGCATGGTGACCGGGTCTGCGGCGGCGGGATGGTTAGTAAAGTCGATATTCTTCAGCTGACTGGACATTTTTTCACGAACTTCAACGGGCG‑CGATTACATCGAGA‑ACATCCAGAATTTGTTTGATAACCAACTGGCAAGCAACCACATCAGAAACCAAT > NC_000913/1987257‑1987729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |