mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 83,579 | (A)7→8 | intergenic (‑50/+43) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 124,078 | C→T | D354D (GAC→GAT) | aceE → | pyruvate dehydrogenase E1 component |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 262,762 | Δ1 bp | intergenic (+6/‑109) | proA → / → thrW | glutamate‑5‑semialdehyde dehydrogenase/tRNA‑Thr |
| RA | 263,050 | T→C | intergenic (+104/+278) | thrW → / ← ykfI | tRNA‑Thr/toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 403,205 | (T)7→8 | intergenic (+43/‑76) | phoA → / → psiF | alkaline phosphatase/phosphate starvation‑inducible protein PsiF |
| RA | 421,256 | A→G | T91A (ACC→GCC) | proY → | putative transporter ProY |
| RA | 498,116 | C→T | P21L (CCT→CTT) | hemH → | ferrochelatase |
| RA | 498,809 | A→G | K252R (AAA→AGA) | hemH → | ferrochelatase |
| RA | 499,060 | T→G | D305A (GAC→GCC) | aes ← | acetylesterase |
| MC JC | 499,082 | Δ52,248 bp | [aes]–[ybcF] | 46 genes [aes], gsk, ybaL, fsr, ushA, ybaK, chiX, ybaP, ybaQ, copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbG, selU, allS, allA, allR, allZ, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, ylbE, ylbF, [ybcF] |
|
| RA | 694,721 | C→T | G79S (GGC→AGC) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 709,364 | A→G | D344G (GAT→GGT) | chiP → | chitooligosaccharide outer membrane channel |
| RA | 722,091 | C→T | G775E (GGG→GAG) | kdpD ← | sensor histidine kinase KdpD |
| RA | 723,528 | (T)8→7 | coding (887/2685 nt) | kdpD ← | sensor histidine kinase KdpD |
| RA | 803,662 | C→A | L54I (CTT→ATT) | ybhJ → | putative hydratase YbhJ |
| RA | 851,631 | A→G | Y323H (TAC→CAC) | opgE ← | phosphoethanolamine transferase OpgE |
| RA | 885,118 | A→G | V38A (GTT→GCT) | ybjH ← | uncharacterized protein YbjH |
| RA | 961,772 | C→T | A191V (GCG→GTG) | cmk → | cytidylate kinase |
| MC JC | 1,042,956 | Δ72,555 bp | [etk]–mdtG | 71 genes [etk], etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA4, insB4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF4, insE4, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, mdtG |
|
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,350,723 | T→C | N106S (AAC→AGC) | fabI ← | enoyl‑[acyl‑carrier‑protein] reductase |
| MC JC | 1,351,171 | Δ239,229 bp | ycjD–ydeT | 230 genes ycjD, sapF, sapD, sapC, sapB, sapA, ymjA, puuP, ymjE, puuA, puuD, puuR, puuC, puuB, puuE, pspF, pspA, pspB, pspC, pspD, pspE, ycjM, ycjN, ycjO, ycjP, ycjQ, ycjR, ycjS, ycjT, ycjU, ompG, ycjW, ycjX, ycjF, tyrR, tpx, ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH4, ynaJ, uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, ynaN, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, kilS, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH5, lomR, stfR, tfaR, pinR, ynaE, ynaM, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD2, insC2, ydbA, insI2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, azoR, hrpA, ydcF, aldA, cybB, rydC, ydcA, yncP, hokB, mokB, sokB, trg, ydcI, ydcJ, opgD, ydcH, rimL, ydcK, tehA, tehB, ydcL, insQ, ydcO, sutR, rlhA, yncJ, hicA, hicB, ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, ydcD, yncO, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA, sra, bdm, osmC, ddpF, ddpD, ddpC, ddpB, ddpA, ddpX, dosP, dosC, yddY, digH, gadC, gadB, pqqL, yddB, yddA, yneP, ydeM, ydeN, ydeO, safA, ydeP, ydeQ, ydeR, ydeS, ydeT |
|
| RA | 1,590,430 | T→C | intergenic (‑429/+424) | ydeT ← / ← hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA |
| MC JC | 1,655,609 | Δ3,042 bp | [ynfA]–[ynfE] | [ynfA], ynfB, speG, ynfC, ynfD, [ynfE] | |
| RA | 1,727,494 | (G)6→7 | coding (836/1098 nt) | nemA → | N‑ethylmaleimide reductase |
| RA | 1,767,736 | T→C | D317G (GAC→GGC) | ydiJ ← | putative FAD‑linked oxidoreductase YdiJ |
| RA | 1,905,761 | G→A | G25D (GGT→GAT) | mntP → | Mn(2(+)) exporter |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,027,836 | T→C | E61G (GAA→GGA) | dgcQ ← | diguanylate cyclase DgcQ |
| MC JC | 2,085,042 | Δ109,115 bp | [tsuA]–[mrp] | 106 genes [tsuA], plaP, yoeI, yeeY, yeeZ, yoeB, yefM, hisL, hisG, hisD, hisC, hisB, hisH, hisA, hisF, hisI, wzzB, ugd, gnd, wbbL, insH7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza, yegH, asmA, dcd, udk, dgcE, alkA, yegD, yegI, yegJ, pphC, yegL, sibA, ibsA, sibB, ibsB, mdtA, mdtB, mdtC, mdtD, baeS, baeR, yegP, trhP, cyaR, ogrK, yegR, yegS, gatR, insE5, insF5, gatR, gatD, gatB, gatA, gatZ, gatY, fbaB, yegT, yegU, yegV, yegW, yegX, thiD, thiM, rcnR, rcnA, rcnB, yehA, yehB, yehC, yehD, yehE, [mrp] |
|
| RA | 2,225,170 | G→A | F154F (TTC→TTT) | yohC ← | putative inner membrane protein |
| MC JC | 2,286,372 | Δ22,969 bp | yejO–[alkB] | 24 genes yejO, insH8, yejO, narP, ccmH, ccmG, ccmF, ccmE, ccmD, ccmC, ccmB, ccmA, napC, napB, napH, napG, napA, napD, napF, yojO, eco, mqo, yojI, [alkB] |
|
| RA | 2,311,650 | A→G | F367S (TTC→TCC) | ompC ← | outer membrane porin C |
| MC JC | 2,312,100 | 24707 bp→A | [ompC]–[gyrA] | 16 genes [ompC], micF, rcsD, rcsB, rcsC, atoS, atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaT, yfaA, [gyrA] |
|
| MC JC | 2,348,550 | Δ41,411 bp | [yfaE]–[yfbP] | 40 genes [yfaE], inaA, glpQ, glpT, glpA, glpB, glpC, rpnE, yfaU, yfaV, rhmD, yfaX, yfaY, yfaZ, nudI, ais, arnB, arnC, arnA, arnD, arnT, arnE, arnF, pmrD, menE, menC, menB, menH, menD, menF, elaB, elaA, rbn, elaD, yfbK, yfbL, yfbM, yfbN, yfbO, [yfbP] |
|
| RA | 2,389,974 | T→G | intergenic (+10/+74) | yfbP → / ← nuoN | uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N |
| RA | 2,390,295 | T→G | Q404P (CAG→CCG) | nuoN ← | NADH:quinone oxidoreductase subunit N |
| RA | 2,424,640 | T→C | Q198Q (CAA→CAG) | hisM ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisM |
| RA | 2,531,483 | T→A | S7S (TCT→TCA) | cysZ → | sulfate:H(+) symporter |
| RA | 2,756,045 | T→C | intergenic (+90/‑114) | ssrA → / → intA | tmRNA/integrase IntA |
| RA | 2,756,047 | T→C | intergenic (+92/‑112) | ssrA → / → intA | tmRNA/integrase IntA |
| MC JC | 2,756,415 | Δ57,799 bp | [intA]–emrB | 53 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjW, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, ypjB, ypjC, ileY, glaH, lhgD, gabD, gabT, gabP, glaR, kbp, yqaE, ygaV, ygaP, stpA, alaE, ygaC, ygaM, nrdH, nrdI, nrdE, nrdF, proV, proW, proX, ygaZ, ygaH, mprA, emrA, emrB |
|
| RA | 2,823,802 | A→G | intergenic (‑33/+47) | recA ← / ← pncC | DNA recombination/repair protein RecA/NMN aminohydrolase |
| MC JC | 2,823,891 | Δ42,638 bp | [pncC]–ygbN | 41 genes [pncC], mltB, srlA, srlE, srlB, srlD, gutM, srlR, gutQ, norR, norV, norW, hypF, hydN, ascG, ascF, ascB, hycI, hycH, hycG, hycF, hycE, hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN |
|
| RA | 2,868,452 | T→C | N101S (AAC→AGC) | nlpD ← | murein hydrolase activator NlpD |
| RA | 2,888,227 | T→C | E29G (GAA→GGA) | cysH ← | phosphoadenosine phosphosulfate reductase |
| RA | 2,925,117 | G→A | P55L (CCG→CTG) | syd ← | SecY‑interacting protein |
| RA | 3,194,362 | (G)6→7 | coding (1499/1662 nt) | yqiK → | flotillin family inner membrane protein YqiK |
| RA | 3,214,325 | T→C | F427L (TTC→CTC) | rpoD → | RNA polymerase sigma factor RpoD |
| RA | 3,216,473 | A→G | Y7H (TAC→CAC) | nfeF ← | NADPH‑dependent ferric‑chelate reductase |
| MC JC | 3,216,779 | 53253 bp→GTC | [nfeR]–yhaC | 50 genes [nfeR], aer, patA, ygjH, ebgR, ebgA, ebgC, ygjI, ygjJ, ygjK, fadH, higA, higB, rlmG, ygjP, ygjQ, ygjR, alx, sstT, ygjV, uxaA, uxaC, exuT, exuR, yqiM, yqjA, mzrA, yqjC, yqjD, yqjE, yqjK, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, cyuA, cyuP, tdcG, tdcF, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC |
|
| RA | 3,297,193 | G→A | L316L (CTG→TTG) | yraQ ← | permease family protein YraQ |
| RA | 3,321,967 | A→G | intergenic (‑354/+105) | yhbX ← / ← leuU | putative hydrolase YhbX/tRNA‑Leu |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,449,779 | G→A | S35S (AGC→AGT) | rpsC ← | 30S ribosomal subunit protein S3 |
| RA | 3,468,768 | C→T | W362* (TGG→TGA) | chiA ← | endochitinase |
| RA | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,484,656 | T→C | I56T (ATC→ACC) | prkB → | putative phosphoribulokinase |
| RA | 3,523,800 | C→G | Y310* (TAC→TAG) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,593,308 | Δ1 bp | coding (130/714 nt) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| RA | 3,718,336 | A→C | *237E (TAA→GAA) | yiaF ← | DUF3053 domain‑containing protein YiaF |
| RA | 3,725,393 | G→A | intergenic (‑75/+20) | glyQ ← / ← ysaB | glycine‑‑tRNA ligase subunit alpha/putative lipoprotein YsaB |
| RA | 3,725,582 | C→A | C44F (TGC→TTC) | ysaB ← | putative lipoprotein YsaB |
| MC JC | 3,725,590 | 46159 bp→ATCG | [ysaB]–yibI | 41 genes [ysaB], wecH, yiaA, yiaB, xylB, xylZ, xylA, xylF, xylG, xylH, xylR, bax, baxL, malS, avtA, ysaA, plaR, yiaK, yiaL, yiaM, yiaN, yiaO, lyxK, sgbH, sgbU, sgbE, yiaT, yiaU, yiaV, yiaW, aldB, yiaY, selB, selA, yibF, rhsA, yibA, yibG, yibV, yibH, yibI |
|
| RA | 3,854,281 | A→G | L120L (TTA→TTG) | emrD → | multidrug efflux pump EmrD |
| RA | 3,915,950 | T→C | D8G (GAC→GGC) | atpC ← | ATP synthase F1 complex subunit epsilon |
| RA | 3,922,994 | T→C | intergenic (‑554/+63) | atpI ← / ← rsmG | ATP synthase accessory factor AtpI/16S rRNA m(7)G527 methyltransferase |
| RA | 3,939,662 | C→T | M317I (ATG→ATA) | hsrA ← | putative transporter HsrA |
| RA | 4,106,199 | A→G | E127G (GAG→GGG) | cpxP → | periplasmic protein CpxP |
| RA | 4,123,930 | A→T | V176E (GTA→GAA) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,174,041 | A→T | E320D (GAA→GAT) | birA → | DNA‑binding transcriptional repressor/biotin‑[acetyl‑CoA‑carboxylase] ligase BirA |
| RA | 4,192,392 | C→T | A82T (GCC→ACC) | thiG ← | 1‑deoxy‑D‑xylulose 5‑phosphate:thiol sulfurtransferase |
| RA | 4,204,890 | C→T | G348S (GGT→AGT) | purD ← | phosphoribosylamine‑‑glycine ligase |
| RA | 4,241,235 | A→G | G340G (GGT→GGC) | xylE ← | D‑xylose:H(+) symporter |
| RA | 4,278,657 | T→C | V60A (GTT→GCT) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,278,682 | C→T | A68A (GCC→GCT) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,279,023 | T→C | F182S (TTC→TCC) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,279,034 | Δ2 bp | coding (556‑557/1350 nt) | ghxP → | guanine/hypoxanthine transporter GhxP |
| MC JC | 4,279,050 | Δ82,373 bp | [ghxP]–[cadC] | 72 genes [ghxP], yjcE, yjcF, actP, yjcH, acs, ytcB, nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG, gltP, yjcO, fdhF, mdtP, mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnD, phnC, yjdN, yjdM, rdcA, rdcB, proP, pmrR, basS, basR, eptA, adiC, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, yjdI, yjdJ, ghoS, ghoT, lysU, dtpC, cadA, cadB, [cadC] |
|
| RA | 4,362,045 | T→C | intergenic (‑111/+506) | cadC ← / ← pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| MC JC | 4,488,473 | Δ111,735 bp | yjgR–yjjA | 100 genes yjgR, idnR, idnT, idnO, idnD, idnK, ahr, leuX, insC6, insD6, yjgZ, insG, nanX, nanY, ythA, insO, insI3, insO, insO, fecE, fecD, fecC, fecB, fecA, fecR, fecI, ykiE, insA7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, ythB, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH, gntP, uxuA, uxuB, uxuR, yjiC, ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, ytiE, yjiR, yjiS, yjiT, mcrC, mcrB, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD, opgB, yjjA |
|
| RA | 4,600,215 | +C | intergenic (‑26/+23) | yjjA ← / ← dnaC | DUF2501 domain‑containing protein YjjA/DNA replication protein DnaC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263076 | 388647 | 125572 | 7 [0] | [6] 8 | ykfI–tauD | ykfI,yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI1,insN,eyeA,ykfC,insH1,mmuP,mmuM,afuC,insB2,insA2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,ykgS,insB3,insA3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,matA,ykgL,ykgO,ykgM,ykgR,insE1,insF1,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH,betA,betB,betI,betT,yahV,pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL,frmB,frmA,frmR,yaiO,yaiX,insC1,insD1,yaiX,yaiP,ykiC,yaiS,tauA,tauB,tauC,tauD |
| * | * | ÷ | NC_000913 | 1591199 | 1652788 | 61590 | 7 [6] | [6] 7 | [hipA]–[ynfP] | [hipA],hipB,lsrK,lsrR,lsrA,lsrC,lsrD,lsrB,lsrF,lsrG,tam,yneE,uxaB,dgcF,yneG,glsB,sad,yneJ,yneK,ydeA,marC,marR,marA,marB,eamA,ydeE,mgtS,mgtT,mgrR,dgcZ,ydeI,ydeJ,dcp,ydfG,rspR,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,stfQ,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,ynfU,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,[ynfP] |
| * | * | ÷ | NC_000913 | 3423896–3424231 | 3424435–3424238 | 8–540 | 7 [6] | [6] 7 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 3619008 | 3718315 | 99308 | 14 [0] | [6] 8 | rhsB–ghrB | rhsB,yhhH,yhhI,yhhJ,rbbA,yhiI,yhiY,yhiJ,yhiM,yhiN,pitA,uspB,uspA,yriA,yriB,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH11,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,gadF,mdtE,mdtF,gadW,gadY,gadX,gadA,ccp,treF,yhjB,rcdB,yhjD,yhjE,yhjG,pdeH,kdgK,yhjJ,dctA,pdeK,bcsC,bcsZ,bcsB,bcsA,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 25 (0.450) | 10 (0.190) | 9/458 | 1.9 | 32.1% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 19 (0.370) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 23 (0.410) | 16 (0.310) | 16/458 | 1.0 | 44.1% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 19 (0.370) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||