mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 621,713 | 0 | C | T | 76.2% | 146.0 / 39.7 | 82 | A159A (GCG→GCA) | fepD | ferric enterobactin ABC transporter membrane subunit FebD |
| * | NC_000913 | 2,462,889 | 1 | . | C | 56.0% | 42.5 / 35.6 | 25 | intergenic (+243/‑123) | fadL/yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| * | NC_000913 | 2,710,498 | 0 | C | T | 41.3% | 8.9 / 56.7 | 46 | L27L (CTG→TTG) | nadB | L‑aspartate oxidase |
| * | NC_000913 | 825,235 | 0 | T | A | 37.1% | 37.1 / 14.0 | 35 | M292L (ATG→TTG) | ybhR | ABC exporter membrane subunit YbhR |
| * | NC_000913 | 4,145,076 | 0 | A | C | 32.9% | 84.8 / 11.7 | 77 | N361T (AAC→ACC) | pflD | putative formate acetyltransferase 2 |
| * | NC_000913 | 4,457,105 | 0 | A | G | 31.3% | 107.1 / 15.9 | 68 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 64,196 | 0 | G | A | 31.3% | 81.2 / 68.7 | 84 | Q529* (CAA→TAA) | polB | DNA polymerase II |
| * | NC_000913 | 4,004,132 | 0 | G | A | 27.8% | 98.8 / 14.3 | 55 | A16V (GCT→GTT) | rarD | putative transporter RarD |
| * | NC_000913 | 4,098,155 | 0 | A | C | 26.4% | 123.8 / 10.9 | 74 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator RhaS |
| * | NC_000913 | 2,532,243 | 0 | G | T | 25.9% | 89.7 / 11.7 | 58 | intergenic (+19/‑166) | cysZ/cysK | sulfate:H(+) symporter/cysteine synthase A |
| * | NC_000913 | 3,914,523 | 0 | C | T | 23.5% | 122.0 / 11.2 | 68 | V226V (GTG→GTA) | glmU | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase |
| * | NC_000913 | 2,415,866 | 0 | A | T | 21.9% | 151.6 / 34.7 | 76 | I374F (ATC→TTC) | pta | phosphate acetyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 227269 | NA (NA) | 3 (0.050) | 3/484 | 3.5 | 9.8% | noncoding (1511/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 1343292 | 28 (0.500) | coding (37/219 nt) | osmB | osmotically‑inducible lipoprotein OsmB | |||||
| * | ? | NC_000913 | = 806457 | 57 (1.020) | 3 (0.050) | 3/490 | 3.6 | 5.0% | coding (825/1284 nt) | ybhC | outer membrane lipoprotein YbhC |
| ? | NC_000913 | = 4037143 | 56 (1.010) | noncoding (3/77 nt) | ileT | tRNA‑Ile | |||||