mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 4,337 | C→T | L202L (CTG→TTG) | thrC → | threonine synthase |
| RA | 10,451 | A→G | M15T (ATG→ACG) | satP ← | acetate/succinate:H(+) symporter |
| RA | 34,388 | T→G | I30S (ATC→AGC) | caiF → | DNA‑binding transcriptional activator CaiF |
| RA | 71,686 | C→T | T112T (ACC→ACT) | yabI → | DedA family protein YabI |
| RA | 209,056 | C→T | L146L (CTG→TTG) | accA → | acetyl‑CoA carboxyltransferase subunit alpha |
| RA | 246,601 | C→T | intergenic (‑99/‑111) | dinJ ← / → yafL | antitoxin/DNA‑binding transcriptional repressor DinJ/NlpC/P60 family protein YafL |
| JC JC | 253,485 | IS3 (–) +3 bp | intergenic (+324/+772) | yafP → / ← pepD | putative N‑acetyltransferase YafP/peptidase D |
| RA | 355,714 | C→T | L265L (CTG→TTG) | codB → | cytosine transporter |
| RA | 527,853 | G→A | E91E (GAG→GAA) | ybbC → | PF15631 family protein YbbC |
| RA | 530,993 | C→T | Q78Q (CAG→CAA) | selU ← | tRNA 2‑selenouridine synthase |
| RA | 536,841 | G→A | G86S (GGC→AGC) | glxR → | tartronate semialdehyde reductase 2 |
| RA | 554,191 | G→A | L83L (CTG→TTG) | ppiB ← | peptidyl‑prolyl cis‑trans isomerase B |
| RA | 557,635 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
| RA | 557,785 | C→T | intergenic (‑44/‑427) | folD ← / → sfmA | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase/putative fimbrial protein SfmA |
| RA | 558,615 | G→A | G135E (GGG→GAG) | sfmA → | putative fimbrial protein SfmA |
| RA | 561,012 | C→T | A439V (GCC→GTC) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 562,252 | G→A | Q852Q (CAG→CAA) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 569,047 | G→A | G49E (GGA→GAA) | ybcK → | putative recombinase YbcK |
| JC JC | 572,138 | IS2 (+) +5 bp | coding (685‑689/798 nt) | ybcM → | putative DNA‑binding transcriptional regulator |
| RA | 586,190 | G→A | P240L (CCG→CTG) | envY ← | DNA‑binding transcriptional activator EnvY |
| RA | 591,016 | C→T | M721I (ATG→ATA) | nfrB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase |
| RA | 592,144 | G→A | T345T (ACC→ACT) | nfrB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase |
| RA | 592,157 | G→A | T341I (ACC→ATC) | nfrB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase |
| RA | 592,507 | C→T | P224P (CCG→CCA) | nfrB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase |
| RA | 592,824 | C→T | E119K (GAA→AAA) | nfrB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase |
| RA | 596,355 | G→A | L252L (CTG→CTA) | cusC → | copper/silver export system outer membrane channel |
| RA | 597,771 | C→T | T98I (ACC→ATC) | cusB → | copper/silver export system membrane fusion protein |
| RA | 598,874 | C→T | P54L (CCC→CTC) | cusA → | copper/silver export system RND permease |
| RA | 610,370 | C→T | G709S (GGT→AGT) | fepA ← | ferric enterobactin outer membrane transporter |
| RA | 615,974 | C→T | S606S (TCC→TCT) | entF → | apo‑serine activating enzyme |
| RA | 617,521 | C→T | T1122M (ACG→ATG) | entF → | apo‑serine activating enzyme |
| RA | 621,495 | C→T | S232N (AGT→AAT) | fepD ← | ferric enterobactin ABC transporter membrane subunit FebD |
| RA | 623,283 | C→T | S328S (AGC→AGT) | entS → | enterobactin exporter EntS |
| RA | 623,853 | C→T | E220K (GAA→AAA) | fepB ← | ferric enterobactin ABC transporter periplasmic binding protein |
| RA | 623,856 | G→A | L219L (CTG→TTG) | fepB ← | ferric enterobactin ABC transporter periplasmic binding protein |
| RA | 624,165 | G→A | P116S (CCG→TCG) | fepB ← | ferric enterobactin ABC transporter periplasmic binding protein |
| RA | 624,431 | G→A | A27V (GCT→GTT) | fepB ← | ferric enterobactin ABC transporter periplasmic binding protein |
| RA | 625,685 | G→A | Q267Q (CAG→CAA) | entC → | isochorismate synthase EntC |
| RA | 629,942 | G→A | G17R (GGA→AGA) | cstA → | pyruvate transporter CstA |
| RA | 633,614 | G→A | S10N (AGC→AAC) | ybdL → | methionine transaminase |
| RA | 635,555 | C→T | G339S (GGC→AGC) | ybdN ← | putative PAPS reductase/DUF3440 domain‑containing protein YbdN |
| RA | 635,740 | C→T | G277E (GGG→GAG) | ybdN ← | putative PAPS reductase/DUF3440 domain‑containing protein YbdN |
| RA | 639,552 | C→T | intergenic (+44/‑201) | ahpC → / → ahpF | alkyl hydroperoxide reductase, AhpC component/alkyl hydroperoxide reductase, AhpF component |
| RA | 641,472 | G→A | R132R (CGC→CGT) | uspG ← | universal stress protein G |
| RA | 641,564 | C→T | E102K (GAA→AAA) | uspG ← | universal stress protein G |
| RA | 642,112 | C→T | P9S (CCA→TCA) | ybdR → | putative Zn(2(+))‑dependent alcohol dehydrogenase YbdR |
| RA | 643,938 | G→A | D10D (GAC→GAT) | rnk ← | nucleoside diphosphate kinase regulator |
| RA | 653,108 | G→A | A292T (GCG→ACG) | dpiB → | sensor histidine kinase DpiB |
| RA | 663,381 | C→T | A195T (GCG→ACG) | dacA ← | D‑alanyl‑D‑alanine carboxypeptidase DacA |
| RA | 664,146 | G→A | Q349* (CAA→TAA) | rlpA ← | rare lipoprotein RlpA |
| RA | 666,284 | G→A | F10F (TTC→TTT) | mrdB ← | peptidoglycan glycosyltransferase MrdB |
| RA | 668,005 | G→A | I71I (ATC→ATT) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 673,515 | G→A | S423S (TCC→TCT) | leuS ← | leucine‑‑tRNA ligase |
| RA | 677,073 | G→A | R121R (CGG→CGA) | ybeR → | DUF1266 domain‑containing protein YbeR |
| RA | 679,166 | G→A | P81S (CCA→TCA) | ybeT ← | Sel1 repeat‑containing protein YbeT |
| RA | 679,612 | G→A | G35G (GGG→GGA) | ybeU → | DUF1266 domain‑containing protein YbeU |
| RA | 679,786 | G→A | E93E (GAG→GAA) | ybeU → | DUF1266 domain‑containing protein YbeU |
| RA | 679,889 | G→A | V128I (GTC→ATC) | ybeU → | DUF1266 domain‑containing protein YbeU |
| RA | 680,063 | G→A | A186T (GCG→ACG) | ybeU → | DUF1266 domain‑containing protein YbeU |
| RA | 682,466 | G→A | P310S (CCG→TCG) | hscC ← | chaperone protein HscC |
| RA | 690,998 | G→A | Q263* (CAG→TAG) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 693,596 | G→A | P454S (CCG→TCG) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 695,237 | G→A | S46N (AGC→AAC) | ubiF → | 3‑demethoxyubiquinol 3‑hydroxylase |
| RA | 709,993 | C→T | D68D (GAC→GAT) | chiQ → | lipoprotein ChiQ |
| RA | 728,943 | C→T | intergenic (‑122/‑191) | kdpF ← / → ybfA | K(+) transporting P‑type ATPase subunit KdpF/DUF2517 domain‑containing protein YbfA |
| RA | 739,492 | C→T | R164R (CGC→CGT) | ybgA → | DUF1722 domain‑containing protein YbgA |
| RA | 750,665 | G→A | T502I (ACC→ATC) | ybgQ ← | putative fimbrial usher protein YbgQ |
| RA | 752,352 | C→T | L148L (CTG→CTA) | ybgD ← | putative fimbrial protein YbgD |
| RA | 753,201 | C→T | S423N (AGC→AAC) | gltA ← | citrate synthase |
| RA | 757,738 | C→T | A17V (GCT→GTT) | sdhB → | succinate:quinone oxidoreductase, iron‑sulfur cluster binding protein |
| RA | 772,257 | C→T | A267V (GCT→GTT) | cydA → | cytochrome bd‑I subunit 1 |
| RA | 772,601 | C→T | R382C (CGT→TGT) | cydA → | cytochrome bd‑I subunit 1 |
| RA | 783,578 | C→T | A138V (GCA→GTA) | pnuC → | nicotinamide riboside transporter |
| RA | 784,282 | C→T | G181D (GGC→GAC) | zitB ← | Zn(2(+))/Cd(2(+))/Ni(2(+))/Cu(2(+)) exporter |
| RA | 788,000 | C→T | A280T (GCT→ACT) | galM ← | galactose‑1‑epimerase |
| RA | 792,809 | C→T | S327N (AGC→AAC) | modF ← | ABC family protein ModF |
| RA | 794,396 | C→T | Q83Q (CAG→CAA) | modE ← | DNA‑binding transcriptional dual regulator ModE |
| RA | 811,190 | C→T | P270P (CCC→CCT) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 819,880 | C→T | intergenic (+133/‑4) | moaE → / → ybhL | molybdopterin synthase catalytic subunit/Bax1‑I family protein YbhL |
| JC JC | 820,823 | IS5 (–) +4 bp | coding (31‑34/714 nt) | ybhM → | Bax1‑I family protein YbhM |
| RA | 821,230 | C→T | A146A (GCC→GCT) | ybhM → | Bax1‑I family protein YbhM |
| RA | 822,611 | C→T | V377I (GTT→ATT) | clsB ← | cardiolipin synthase B |
| RA | 834,360 | C→T | L431F (CTC→TTC) | dinG → | ATP‑dependent DNA helicase DinG |
| RA | 837,571 | A→G | intergenic (+9/+94) | ybiE → / ← ybiJ | protein YbiE/DUF1471 domain‑containing protein YbiJ |
| RA | 876,917 | C→T | E373E (GAG→GAA) | rimO ← | ribosomal protein S12 methylthiotransferase RimO |
| RA | 896,908 | C→T | P259S (CCG→TCG) | potH → | putrescine ABC transporter membrane subunit PotH |
| RA | 901,976 | A→G | V92A (GTG→GCG) | artQ ← | L‑arginine ABC transporter membrane subunit ArtQ |
| RA | 908,844 | C→T | E151K (GAA→AAA) | ltaE ← | low‑specificity L‑threonine aldolase |
| RA | 923,970 | T→C | V236A (GTG→GCG) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 934,253 | C→T | P344S (CCG→TCG) | ftsK → | cell division DNA translocase FtsK |
| RA | 951,823 | C→T | A578T (GCT→ACT) | pflB ← | pyruvate formate‑lyase |
| RA | 962,005 | C→T | S4F (TCT→TTT) | rpsA → | 30S ribosomal subunit protein S1 |
| RA | 985,174 | C→T | G179D (GGC→GAC) | aspC ← | aspartate aminotransferase |
| RA | 986,934 | C→T | A17T (GCA→ACA) | ompF ← | outer membrane porin F |
| RA | 1,032,327 | C→T | T63T (ACC→ACT) | hyaA → | hydrogenase 1 small subunit |
| RA | 1,075,193 | C→T | K1230K (AAG→AAA) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,076,997 | C→T | R629H (CGC→CAC) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,093,264 | C→T | A130V (GCA→GTA) | dgcT → | putative diguanylate cyclase DgcT |
| JC JC | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,346,592 | C→T | A51T (GCT→ACT) | pdeR ← | cyclic di‑GMP phosphodiesterase PdeR |
| RA | 1,351,196 | (G)7→8 | intergenic (‑157/+211) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,351,299 | C→T | intergenic (‑260/+108) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,354,806 | C→T | G222D (GGT→GAT) | sapB ← | putrescine ABC exporter membrane subunit SapB |
| RA | 1,361,692 | C→T | S191S (AGC→AGT) | puuD → | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,365,811 | C→T | L88L (CTG→TTG) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,366,655 | C→T | A369V (GCG→GTG) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,379,933 | C→T | P684S (CCT→TCT) | ycjT → | kojibiose phosphorylase |
| MC JC | 1,397,239 | Δ10,478 bp | IS5‑mediated | ynaJ–[dgcM] | ynaJ, uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, [dgcM] |
| RA | 1,409,540 | G→A | L10L (TTG→TTA) | dbpA → | ATP‑dependent RNA helicase DbpA |
| RA | 1,458,524 | C→T | F87F (TTC→TTT) | paaG → | putative ring 1,2‑epoxyphenylacetyl‑CoA isomerase (oxepin‑CoA forming) |
| RA | 1,458,876 | C→T | P205S (CCG→TCG) | paaG → | putative ring 1,2‑epoxyphenylacetyl‑CoA isomerase (oxepin‑CoA forming) |
| RA | 1,527,897 | C→T | intergenic (+745/‑2025) | yncH → / → ydcD | DUF5445 domain‑containing protein YncH/uncharacterized protein YdcD |
| RA | 1,608,785 | C→T | V80I (GTT→ATT) | yneE ← | PF01062 family inner membrane protein YneE |
| RA | 1,613,396 | C→T | K436K (AAG→AAA) | sad ← | succinate semialdehyde dehydrogenase (NAD(P)(+)) Sad |
| RA | 1,626,369 | C→T | A338T (GCA→ACA) | dcp ← | peptidyl‑dipeptidase Dcp |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,676,072 | C→T | A97T (GCG→ACG) | pntB ← | pyridine nucleotide transhydrogenase subunit beta |
| RA | 1,695,592 | G→A | Y160Y (TAC→TAT) | uidA ← | beta‑glucuronidase |
| RA | 1,758,462 | C→T | L88L (CTG→CTA) | ldtE ← | L,D‑transpeptidase LdtE |
| RA | 1,829,704 | T→C | T11A (ACG→GCG) | astD ← | aldehyde dehydrogenase |
| RA | 1,839,554 | C→T | L30F (CTT→TTT) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,842,076 | C→T | P20P (CCG→CCA) | ynjH ← | DUF1496 domain‑containing protein YnjH |
| RA | 1,844,295 | C→T | G193R (GGA→AGA) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| JC JC | 1,859,380 | IS5 (+) +4 bp | coding (847‑850/1380 nt) | ydjK ← | putative transporter YdjK |
| JC JC | 1,909,378 | IS2 (–) +5 bp | coding (718‑722/792 nt) | kdgR ← | DNA‑binding transcriptional repressor KdgR |
| RA | 1,918,032 | A→G | S175G (AGC→GGC) | letB → | lipophilic envelope spanning tunnel |
| RA | 1,972,728 | G→A | intergenic (‑37/+108) | tar ← / ← cheW | methyl‑accepting chemotaxis protein Tar/chemotaxis protein CheW |
| RA | 2,021,095 | A→G | D3G (GAC→GGC) | fliN → | flagellar motor switch protein FliN |
| RA | 2,032,423 | G→A | V219V (GTC→GTT) | yedJ ← | putative HD superfamily phosphohydrolase YedJ |
| JC JC | 2,034,215 | +A :: IS3 (+) +5 bp | intergenic (+476/‑1616) | rseX → / → hchA | small regulatory RNA RseX/protein/nucleic acid deglycase 1 |
| RA | 2,041,848 | C→T | A158A (GCC→GCT) | zinT → | metal‑binding protein ZinT |
| RA | 2,042,111 | C→T | intergenic (+86/‑257) | zinT → / → yodB | metal‑binding protein ZinT/putative cytochrome b561 YodB |
| RA | 2,043,522 | C→A | noncoding (36/90 nt) | serU ← | tRNA‑Ser |
| RA | 2,064,532 | G→A | L231L (CTG→TTG) | cobS ← | cobalamin 5'‑phosphate synthase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,190,569 | C→T | G114G (GGG→GGA) | yehB ← | putative fimbrial usher protein YehB |
| RA | 2,208,438 | G→A | A158T (GCT→ACT) | yehP → | VWA domain‑containing protein YehP |
| RA | 2,208,692 | G→A | W242* (TGG→TGA) | yehP → | VWA domain‑containing protein YehP |
| RA | 2,218,535 | G→A | P8L (CCT→CTT) | yehY ← | glycine betaine ABC transporter membrane subunit YehY |
| RA | 2,221,620 | G→A | L124F (CTC→TTC) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,228,777 | G→A | intergenic (‑1507/‑205) | yohF ← / → yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| RA | 2,229,789 | G→A | A199A (GCC→GCT) | dusC ← | tRNA‑dihydrouridine(16) synthase |
| RA | 2,233,312 | C→T | T145T (ACC→ACT) | sanA → | DUF218 domain‑containing protein SanA |
| RA | 2,236,930 | C→T | G275D (GGC→GAC) | mglC ← | D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| RA | 2,237,186 | C→T | A190T (GCG→ACG) | mglC ← | D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| RA | 2,242,537 | C→T | G144D (GGC→GAC) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,275,191 | C→T | T338I (ACC→ATC) | yejB → | putative oligopeptide ABC transporter membrane subunit YejB |
| RA | 2,281,965 | C→T | A445V (GCC→GTC) | radD → | putative DNA repair helicase RadD |
| RA | 2,282,594 | C→T | F26F (TTC→TTT) | rplY → | 50S ribosomal subunit protein L25 |
| RA | 2,292,357 | C→T | A18A (GCG→GCA) | ccmH ← | holocytochrome c synthase CcmH component |
| RA | 2,295,328 | C→T | G18E (GGG→GAG) | ccmE ← | periplasmic heme chaperone |
| RA | 2,297,523 | C→T | G41E (GGG→GAG) | ccmA ← | cytochrome c maturation protein A |
| RA | 2,299,259 | C→T | W107* (TGG→TAG) | napH ← | ferredoxin‑type protein NapH |
| RA | 2,307,752 | C→T | T288T (ACG→ACA) | yojI ← | ABC transporter family protein/microcin J25 efflux protein |
| RA | 2,314,449 | C→T | A321V (GCG→GTG) | rcsD → | RcsD phosphotransferase |
| JC JC | 2,317,455 | IS2 (–) +5 bp | coding (2418‑2422/2850 nt) | rcsC ← | histidine kinase RcsC |
| RA | 2,328,023 | C→T | D41N (GAT→AAT) | yfaP ← | DUF2135 domain‑containing protein YfaP |
| RA | 2,328,771 | C→T | A343T (GCG→ACG) | yfaQ ← | tandem DUF2300 domain‑containing protein YfaQ |
| RA | 2,334,004 | C→T | intergenic (‑4207/+332) | yfaQ ← / ← yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| RA | 2,342,990 | C→T | A394T (GCT→ACT) | yfaL ← | putative autotransporter adhesin YfaL |
| RA | 2,346,833 | C→T | P657S (CCG→TCG) | nrdA → | ribonucleoside‑diphosphate reductase 1 subunit alpha |
| RA | 2,349,985 | G→A | L343L (CTG→TTG) | glpQ ← | glycerophosphoryl diester phosphodiesterase GlpQ |
| RA | 2,351,419 | C→T | G319D (GGC→GAC) | glpT ← | sn‑glycerol 3‑phosphate:phosphate antiporter |
| RA | 2,356,412 | C→T | P298S (CCG→TCG) | glpC → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit C |
| RA | 2,363,006 | C→T | G210S (GGC→AGC) | yfaY ← | IPR008135 CinA family protein YfaY |
| RA | 2,367,767 | C→T | L233L (CTA→TTA) | arnC → | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| RA | 2,370,513 | C→T | H166Y (CAT→TAT) | arnD → | putative 4‑deoxy‑4‑formamido‑L‑arabinose‑phosphoundecaprenol deformylase ArnD |
| RA | 2,372,068 | G→A | S387S (TCG→TCA) | arnT → | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| RA | 2,373,773 | C→T | V411M (GTG→ATG) | menE ← | o‑succinylbenzoate‑‑CoA ligase |
| RA | 2,374,600 | C→T | R135H (CGT→CAT) | menE ← | o‑succinylbenzoate‑‑CoA ligase |
| RA | 2,385,564 | C→T | E53E (GAG→GAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,392,932 | C→T | G37E (GGA→GAA) | nuoM ← | NADH:quinone oxidoreductase subunit M |
| JC JC | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,420,990 | (C)6→5 | coding (370/648 nt) | yfcG → | disulfide bond oxidoreductase YfcG |
| RA | 2,536,722 | G→T | R172R (CGC→CGA) | pdxK ← | pyridoxine/pyridoxal/pyridoxamine kinase |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,734,543 | (C)8→9 | coding (492/732 nt) | yfiH ← | purine nucleoside phosphorylase YfiH |
| RA | 2,745,600 | A→G | Y107H (TAC→CAC) | rimM ← | ribosome maturation factor RimM |
| RA | 2,765,794 | (C)7→8 | intergenic (‑18/‑124) | yfjM ← / → rnlA | protein YfjM/RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| RA | 2,774,947 | G→A | G544S (GGT→AGT) | yfjW → | uncharacterized protein YfjW |
| RA | 2,797,912 | G→A | L131L (CTG→CTA) | ygaP → | thiosulfate sulfurtransferase YgaP |
| RA | 2,804,682 | G→A | intergenic (+221/‑133) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2 subunit beta/glycine betaine ABC transporter ATP binding subunit ProV |
| RA | 2,817,187 | G→A | A106V (GCT→GTT) | yqaB ← | fructose‑1‑phosphate phosphatase YqaB |
| RA | 2,821,669 | G→A | L115L (CTG→TTG) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| RA | 2,824,069 | G→A | A93V (GCG→GTG) | pncC ← | NMN aminohydrolase |
| RA | 2,826,243 | C→T | P138S (CCA→TCA) | srlA → | sorbitol‑specific PTS enzyme IIC2 component |
| RA | 2,827,232 | G→A | A281T (GCG→ACG) | srlE → | sorbitol‑specific PTS enzyme IIBC1 component |
| RA | 2,841,748 | G→A | W253* (TGG→TGA) | ascB → | 6‑phospho‑beta‑glucosidase AscB |
| RA | 2,851,748 | G→A | V250I (GTT→ATT) | hypB → | hydrogenase isoenzymes nickel incorporation protein HypB |
| RA | 2,859,252 | G→A | K720K (AAG→AAA) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,872,778 | G→A | L15L (CTA→TTA) | ftsB ← | cell division protein FtsB |
| RA | 2,874,910 | C→T | M170I (ATG→ATA) | cysN ← | sulfate adenylyltransferase subunit 1 |
| RA | 2,879,750 | G→A | P8L (CCC→CTC) | cas1 ← | multifunctional nuclease Cas1 |
| RA | 2,888,425 | G→A | R559C (CGC→TGC) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 2,905,760 | C→T | A17V (GCC→GTC) | ygcG → | TPM domain‑containing protein YgcG |
| RA | 2,907,839 | C→T | A35T (GCA→ACA) | eno ← | enolase |
| RA | 2,917,051 | G→A | K665K (AAG→AAA) | barA → | sensor histidine kinase BarA |
| RA | 2,929,246 | G→A | G340S (GGT→AGT) | sdaC → | L‑serine:H(+) symporter SdaC |
| RA | 2,934,628 | G→A | G132S (GGT→AGT) | fucP → | L‑fucose:H(+) symporter |
| RA | 2,952,553 | G→A | P1151S (CCG→TCG) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,959,477 | G→A | H984H (CAC→CAT) | recC ← | exodeoxyribonuclease V subunit RecC |
| RA | 2,964,473 | G→A | P228L (CCG→CTG) | thyA ← | thymidylate synthase |
| RA | 2,964,510 | T→C | T216A (ACT→GCT) | thyA ← | thymidylate synthase |
| RA | 2,966,593 | G→A | F614F (TTC→TTT) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 2,967,991 | G→A | T148T (ACC→ACT) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 2,970,027 | G→A | W122* (TGG→TGA) | mutH → | DNA mismatch repair protein MutH |
| RA | 2,971,906 | G→A | A104T (GCG→ACG) | tas → | putative NADP(H)‑dependent aldo‑keto reductase Tas |
| RA | 2,973,366 | G→A | A166V (GCC→GTC) | lplT ← | lysophospholipid transporter |
| RA | 2,997,876 | G→A | intergenic (‑276/+158) | insC4 ← / ← ygeQ | IS2 insertion element repressor InsA/putative lipoprotein YgeQ |
| RA | 2,999,916 | G→A | intergenic (‑25/‑429) | actS ← / → xdhA | amidase activator/putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| RA | 3,016,633 | G→A | D192N (GAT→AAT) | ygfK → | putative oxidoreductase, Fe‑S subunit |
| RA | 3,021,725 | G→A | G137D (GGC→GAC) | xdhD → | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| RA | 3,023,328 | G→A | L671L (CTG→CTA) | xdhD → | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| RA | 3,024,034 | G→A | V907I (GTC→ATC) | xdhD → | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| RA | 3,026,913 | G→A | G383D (GGC→GAC) | guaD → | guanine deaminase |
| RA | 3,028,514 | G→A | intergenic (+26/+10) | ghxQ → / ← ygfS | guanine/hypoxanthine transporter GhxQ/putative electron transport protein YgfS |
| RA | 3,033,167 | T→C | F35L (TTC→CTC) | idi → | isopentenyl‑diphosphate Delta‑isomerase |
| RA | 3,034,276 | G→A | T300I (ACT→ATT) | lysS ← | lysine‑‑tRNA ligase |
| RA | 3,035,954 | G→A | L110L (CTG→TTG) | prfB ← | peptide chain release factor RF2 |
| RA | 3,041,987 | G→A | K225K (AAG→AAA) | ygfZ → | folate‑binding protein |
| RA | 3,045,471 | G→A | A144V (GCC→GTC) | ygfF ← | putative oxidoreductase YgfF |
| RA | 3,048,038 | C→T | C335Y (TGT→TAT) | gcvP ← | glycine decarboxylase |
| RA | 3,051,880 | G→A | F146F (TTC→TTT) | ubiI ← | 2‑octaprenylphenol 6‑hydroxylase |
| RA | 3,053,935 | C→T | L302L (CTG→CTA) | pepP ← | Xaa‑Pro aminopeptidase |
| RA | 3,055,061 | G→A | G128G (GGC→GGT) | ygfB ← | PF03695 family protein YgfB |
| RA | 3,056,861 | G→A | noncoding (11/141 nt) | sibC → | small regulatory RNA antitoxin SibC |
| RA | 3,112,170 | G→A | Q294* (CAG→TAG) | yghF ← | putative type II secretion system C‑type protein YghF |
| RA | 3,118,103 | G→A | T337I (ACT→ATT) | yghJ ← | putative lipoprotein YghJ |
| RA | 3,119,577 | G→A | intergenic (‑465/+20) | yghJ ← / ← glcA | putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA |
| RA | 3,138,638 | G→A | intergenic (‑116/‑89) | gss ← / → yghU | fused glutathionylspermidine amidase/glutathionylspermidine synthetase/disulfide reductase/organic hydroperoxide reductase |
| RA | 3,145,482 | G→A | H260H (CAC→CAT) | hybO ← | hydrogenase 2 small subunit |
| RA | 3,146,117 | G→A | P49S (CCG→TCG) | hybO ← | hydrogenase 2 small subunit |
| RA | 3,150,576 | G→A | intergenic (+30/+242) | yghA → / ← exbD | NADP(+)‑dependent aldehyde reductase/Ton complex subunit ExbD |
| RA | 3,159,272 | G→A | S625S (AGC→AGT) | ygiQ ← | radical SAM superfamily protein YgiQ |
| RA | 3,175,417 | G→A | intergenic (‑21/+8) | parE ← / ← yqiA | DNA topoisomerase IV subunit B/esterase YqiA |
| RA | 3,177,540 | G→A | T124I (ACC→ATC) | nudF ← | ADP‑sugar pyrophosphatase |
| RA | 3,180,577 | G→A | A53T (GCC→ACC) | ygiC → | putative acid‑‑amine ligase YgiC |
| RA | 3,183,715 | G→A | intergenic (‑164/+98) | yqiD ← / ← ribB | protein YqiD/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,184,844 | T→C | I2T (ATT→ACT) | ubiK → | ubiquinone biosynthesis accessory factor UbiK |
| RA | 3,184,851 | G→A | P4P (CCG→CCA) | ubiK → | ubiquinone biosynthesis accessory factor UbiK |
| RA | 3,188,878 | G→A | pseudogene (1447/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| RA | 3,194,705 | G→A | intergenic (+180/+16) | yqiK → / ← sibD | flotillin family inner membrane protein YqiK/small RNA SibD |
| RA | 3,195,045 | G→A | intergenic (‑180/+52) | sibD ← / ← sibE | small RNA SibD/small RNA SibE |
| RA | 3,198,889 | G→A | R251R (CGC→CGT) | glnE ← | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase |
| RA | 3,216,118 | G→A | T125M (ACG→ATG) | nfeF ← | NADPH‑dependent ferric‑chelate reductase |
| RA | 3,220,549 | G→A | E352E (GAG→GAA) | patA → | putrescine aminotransferase |
| RA | 3,224,264 | G→A | E544E (GAG→GAA) | ebgA → | evolved beta‑D‑galactosidase subunit alpha |
| RA | 3,228,128 | G→A | D110N (GAC→AAC) | ygjJ → | protein YgjJ |
| RA | 3,231,109 | G→A | G741E (GGG→GAG) | ygjK → | glycoside hydrolase |
| RA | 3,232,391 | G→A | A243T (GCG→ACG) | fadH → | 2,4‑dienoyl‑CoA reductase |
| RA | 3,233,924 | G→A | A74V (GCT→GTT) | higA ← | antitoxin/DNA‑binding transcriptional repressor HigA |
| RA | 3,239,888 | G→A | intergenic (+343/‑56) | alx → / → sstT | putative membrane‑bound redox modulator Alx/serine/threonine:Na(+) symporter |
| RA | 3,242,141 | G→A | P392S (CCG→TCG) | uxaA ← | D‑altronate dehydratase |
| RA | 3,246,567 | G→A | intergenic (+45/‑85) | exuT → / → exuR | hexuronate transporter/DNA‑binding transcriptional repressor ExuR |
| RA | 3,253,554 | G→A | P221S (CCG→TCG) | yhaJ ← | DNA‑binding transcriptional activator YhaJ |
| RA | 3,263,021 | G→A | R214C (CGC→TGC) | tdcD ← | propionate kinase |
| RA | 3,263,139 | G→A | F174F (TTC→TTT) | tdcD ← | propionate kinase |
| RA | 3,273,352 | G→A | A69V (GCC→GTC) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
| RA | 3,291,032 | G→A | R740K (AGA→AAA) | yraJ → | putative fimbrial usher protein YraJ |
| RA | 3,291,034 | G→A | G741S (GGT→AGT) | yraJ → | putative fimbrial usher protein YraJ |
| RA | 3,292,564 | G→A | P258S (CCG→TCG) | rsmI ← | 16S rRNA 2'‑O‑ribose C1402 methyltransferase |
| RA | 3,295,957 | G→A | G50E (GGA→GAA) | diaA → | DnaA initiator‑associating protein DiaA |
| RA | 3,297,101 | G→A | F346F (TTC→TTT) | yraQ ← | permease family protein YraQ |
| RA | 3,309,827 | G→A | L448L (CTG→TTG) | pnp ← | polynucleotide phosphorylase |
| RA | 3,310,086 | G→A | D361D (GAC→GAT) | pnp ← | polynucleotide phosphorylase |
| RA | 3,314,178 | G→A | L613L (CTG→TTG) L613L (CTG→TTG) L613L (CTG→TTG) |
infB ← infB ← infB ← |
translation initiation factor IF‑2beta' translation initiation factor IF‑2beta' translation initiation factor IF‑2beta' |
| RA | 3,318,266 | G→A | noncoding (24/77 nt) | metY ← | tRNA‑Met |
| RA | 3,318,695 | G→A | G20D (GGC→GAC) | argG → | argininosuccinate synthetase |
| RA | 3,322,917 | G→A | P385L (CCA→CTA) | glmM ← | phosphoglucosamine mutase |
| RA | 3,330,184 | G→A | A408T (GCG→ACG) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,333,778 | G→A | E23E (GAG→GAA) | ispB → | all‑trans‑octaprenyl‑diphosphate synthase |
| RA | 3,340,605 | G→A | V111I (GTC→ATC) | yrbG → | putative transport protein YrbG |
| RA | 3,340,850 | G→A | M192I (ATG→ATA) | yrbG → | putative transport protein YrbG |
| RA | 3,346,959 | G→A | A128T (GCG→ACG) | ptsN → | phosphotransferase system enzyme IIA(Ntr) |
| RA | 3,349,687 | G→A | F41F (TTC→TTT) | mtgA ← | peptidoglycan glycosyltransferase MtgA |
| RA | 3,353,339 | G→A | L238L (CTG→TTG) | yhcC ← | radical SAM family oxidoreductase YhcC |
| RA | 3,357,688 | G→A | K988K (AAG→AAA) | gltB → | glutamate synthase subunit GltB |
| RA | 3,359,233 | G→A | Q12Q (CAG→CAA) | gltD → | glutamate synthase subunit GltD |
| RA | 3,361,773 | G→A | E200K (GAG→AAG) | gltF → | periplasmic protein GltF |
| RA | 3,362,046 | G→A | intergenic (+106/‑66) | gltF → / → yhcA | periplasmic protein GltF/putative fimbrial chaperone YhcA |
| RA | 3,362,537 | G→A | W142* (TGG→TGA) | yhcA → | putative fimbrial chaperone YhcA |
| RA | 3,367,830 | G→A | E2K (GAA→AAA) | yhcG → | DUF1016 domain‑containing protein YhcG |
| RA | 3,368,713 | G→A | G296E (GGA→GAA) | yhcG → | DUF1016 domain‑containing protein YhcG |
| RA | 3,371,094 | G→A | T494I (ACC→ATC) | nanT ← | N‑acetylneuraminate:H(+) symporter |
| RA | 3,373,424 | G→A | A51A (GCC→GCT) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,373,503 | G→A | A25V (GCG→GTG) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,376,928 | G→A | L165L (CTG→TTG) | sspA ← | stringent starvation protein A |
| RA | 3,379,523 | G→A | L159L (CTG→TTG) | zapE ← | cell division protein ZapE |
| RA | 3,379,739 | G→A | L87L (CTG→TTG) | zapE ← | cell division protein ZapE |
| RA | 3,382,823 | G→A | S208S (TCG→TCA) | degS → | serine endoprotease |
| RA | 3,385,201 | G→A | intergenic (+28/‑337) | argR → / → yhcN | DNA‑binding transcriptional dual regulator ArgR/DUF1471 domain‑containing stress‑induced protein YhcN |
| RA | 3,385,643 | G→A | A36T (GCA→ACA) | yhcN → | DUF1471 domain‑containing stress‑induced protein YhcN |
| RA | 3,391,313 | G→A | S239F (TCT→TTT) | tldD ← | metalloprotease subunit TldD |
| RA | 3,392,341 | G→A | intergenic (‑313/+117) | tldD ← / ← yhdP | metalloprotease subunit TldD/phospholipid transport factor YhdP |
| RA | 3,392,436 | G→A | intergenic (‑408/+22) | tldD ← / ← yhdP | metalloprotease subunit TldD/phospholipid transport factor YhdP |
| RA | 3,394,608 | G→A | P551S (CCC→TCC) | yhdP ← | phospholipid transport factor YhdP |
| RA | 3,395,443 | G→A | G272G (GGC→GGT) | yhdP ← | phospholipid transport factor YhdP |
| RA | 3,395,871 | G→A | L130L (CTG→TTG) | yhdP ← | phospholipid transport factor YhdP |
| RA | 3,397,079 | G→A | Y239Y (TAC→TAT) | rng ← | RNase G |
| RA | 3,407,078 | C→T | L388L (CTG→TTG) | accC → | biotin carboxylase |
| RA | 3,412,497 | G→A | S282N (AGC→AAC) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,418,812 | G→A | intergenic (+201/‑1322) | yhdV → / → yhdX | lipoprotein YhdV/putative ABC transporter membrane subunit YhdX |
| RA | 3,436,981 | T→C | L155P (CTG→CCG) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,455,511 | G→A | intergenic (‑113/‑67) | gspA ← / → gspC | Type II secretion system protein GspA/Type II secretion system protein GspC |
| RA | 3,486,205 | C→A | T29K (ACG→AAG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,493,996 | G→A | intergenic (+247/‑15) | tsgA → / → nirB | putative transporter TsgA/nitrite reductase (NADH) large subunit |
| RA | 3,542,162 | G→A | G586S (GGT→AGT) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,578,904 | G→A | intergenic (‑178/+46) | gntR ← / ← yhhW | DNA‑binding transcriptional repressor GntR/quercetin 2,3‑dioxygenase |
| RA | 3,579,793 | G→A | P338L (CCC→CTC) | yhhX ← | putative oxidoreductase YhhX |
| RA | 3,585,815 | G→A | R337C (CGC→TGC) | ggt ← | glutathione hydrolase proenzyme |
| RA | 3,594,263 | C→T | L406L (CTG→CTA) | livM ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| RA | 3,595,132 | G→A | L117L (CTG→TTG) | livM ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| RA | 3,596,871 | C→T | G230G (GGG→GGA) | livK ← | L‑leucine/L‑phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,598,338 | G→A | A119T (GCA→ACA) | panZ → | PanD maturation factor |
| RA | 3,605,679 | C→T | intergenic (‑69/‑72) | yhhM ← / → yhhN | DUF2500 domain‑containing protein YhhM/PF07947 family protein YhhN |
| RA | 3,605,956 | C→T | T69I (ACC→ATC) | yhhN → | PF07947 family protein YhhN |
| RA | 3,611,416 | G→A | T106T (ACC→ACT) | yhhS ← | putative transporter YhhS |
| RA | 3,611,718 | C→T | A6T (GCC→ACC) | yhhS ← | putative transporter YhhS |
| RA | 3,613,896 | C→T | T77I (ACT→ATT) | nikA → | Ni(2(+)) ABC transporter periplasmic binding protein |
| RA | 3,614,465 | C→T | P267S (CCG→TCG) | nikA → | Ni(2(+)) ABC transporter periplasmic binding protein |
| RA | 3,614,601 | C→T | A312V (GCC→GTC) | nikA → | Ni(2(+)) ABC transporter periplasmic binding protein |
| RA | 3,617,900 | C→T | A42V (GCC→GTC) | nikE → | Ni(2(+)) ABC transporter ATP binding subunit NikE |
| RA | 3,618,167 | C→T | A131V (GCC→GTC) | nikE → | Ni(2(+)) ABC transporter ATP binding subunit NikE |
| RA | 3,625,578 | G→A | intergenic (+64/+101) | yhhI → / ← yhhJ | putative transposase/ABC transporter family protein YhhJ |
| RA | 3,626,914 | G→A | F875F (TTC→TTT) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,628,144 | G→A | T465T (ACC→ACT) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,631,311 | C→T | S427N (AGC→AAC) | yhiJ ← | DUF4049 domain‑containing protein YhiJ |
| RA | 3,633,214 | G→A | intergenic (‑624/‑1627) | yhiJ ← / → yhiM | DUF4049 domain‑containing protein YhiJ/inner membrane protein YhiM |
| RA | 3,634,197 | G→A | intergenic (‑1607/‑644) | yhiJ ← / → yhiM | DUF4049 domain‑containing protein YhiJ/inner membrane protein YhiM |
| RA | 3,634,570 | G→A | intergenic (‑1980/‑271) | yhiJ ← / → yhiM | DUF4049 domain‑containing protein YhiJ/inner membrane protein YhiM |
| RA | 3,640,390 | G→A | V94I (GTT→ATT) | uspA → | universal stress protein A |
| RA | 3,644,337 | G→A | S282S (TCC→TCT) | prlC ← | oligopeptidase A |
| RA | 3,646,995 | G→A | A233T (GCG→ACG) | gor → | glutathione reductase (NADPH) |
| RA | 3,648,930 | G→A | intergenic (+49/‑5) | arsR → / → arsB | DNA‑binding transcriptional repressor ArsR/arsenite/antimonite:H(+) antiporter |
| RA | 3,651,716 | G→A | pseudogene (426/746 nt) | yhiS → | putative uncharacterized protein YhiS |
| RA | 3,658,173 | G→A | intergenic (‑119/‑193) | arrS ← / → gadE | small regulatory RNA ArrS/DNA‑binding transcriptional activator GadE |
| RA | 3,659,541 | G→A | A104T (GCC→ACC) | mdtE → | multidrug efflux pump membrane fusion protein MdtE |
| RA | 3,665,210 | G→A | L201F (CTT→TTT) | gadX ← | DNA‑binding transcriptional dual regulator GadX |
| RA | 3,675,932 | G→A | A383T (GCA→ACA) | yhjE → | putative transporter YhjE |
| RA | 3,677,097 | G→A | R418R (CGC→CGT) | yhjG ← | AsmA family protein YhjG |
| RA | 3,677,227 | C→T | G375E (GGG→GAG) | yhjG ← | AsmA family protein YhjG |
| RA | 3,679,077 | G→A | I37I (ATC→ATT) | pdeH ← | c‑di‑GMP phosphodiesterase PdeH |
| RA | 3,685,523 | G→A | F32F (TTC→TTT) | pdeK ← | c‑di‑GMP phosphodiesterase PdeK |
| RA | 3,695,147 | C→T | S30S (TCG→TCA) | bcsA ← | cellulose synthase catalytic subunit |
| RA | 3,700,639 | G→A | C26Y (TGC→TAC) | yhjV → | putative transporter YhjV |
| RA | 3,701,327 | G→A | V255V (GTG→GTA) | yhjV → | putative transporter YhjV |
| RA | 3,704,085 | C→T | G226D (GGT→GAT) | dppC ← | dipeptide ABC transporter membrane subunit DppC |
| RA | 3,718,924 | G→A | L41L (CTG→TTG) | yiaF ← | DUF3053 domain‑containing protein YiaF |
| RA | 3,719,664 | G→A | V63I (GTA→ATA) | yiaG → | putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,719,756 | G→A | Q93Q (CAG→CAA) | yiaG → | putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,734,743 | G→A | G342R (GGA→AGA) | xylH → | xylose ABC transporter membrane subunit |
| RA | 3,747,664 | G→A | C194Y (TGC→TAC) | lyxK → | L‑xylulose kinase |
| RA | 3,749,611 | G→A | G127D (GGC→GAC) | sgbU → | putative L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 3,770,266 | G→A | H372Y (CAT→TAT) | yibH ← | inner membrane protein YibH |
| RA | 3,779,756 | G→A | D235N (GAT→AAT) | lldR → | DNA‑binding transcriptional dual regulator LldR |
| RA | 3,780,632 | G→A | G269E (GGA→GAA) | lldD → | L‑lactate dehydrogenase |
| RA | 3,780,774 | G→A | V316V (GTG→GTA) | lldD → | L‑lactate dehydrogenase |
| RA | 3,785,193 | G→A | intergenic (‑178/‑67) | yibN ← / → gpmM | putative sulfurtransferase YibN/2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,786,558 | G→A | E433E (GAG→GAA) | gpmM → | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,793,506 | G→A | P60S (CCA→TCA) | htrL ← | protein HtrL |
| RA | 3,798,042 | T→C | Y365Y (TAT→TAC) I36M (ATA→ATG) |
waaL → yibY ← |
O‑antigen ligase protein YibY |
| RA | 3,802,282 | G→A | N259N (AAC→AAT) | waaO ← | UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase |
| RA | 3,803,543 | G→A | L199F (CTT→TTT) | waaB ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| RA | 3,817,038 | G→A | Q121Q (CAG→CAA) | yicC → | putative RNase adaptor protein YicC |
| RA | 3,838,014 | G→A | W354* (TGG→TGA) | setC → | putative arabinose exporter |
| RA | 3,841,248 | G→A | G164G (GGC→GGT) | nepI ← | purine ribonucleoside exporter |
| RA | 3,843,586 | G→A | T68T (ACC→ACT) | adeQ ← | adenine transporter |
| RA | 3,845,694 | G→A | E577E (GAG→GAA) | adeD → | adenine deaminase |
| RA | 3,847,169 | G→A | intergenic (‑2/+136) | uhpT ← / ← uhpC | hexose‑6‑phosphate:phosphate antiporter/inner membrane protein sensing glucose‑6‑phosphate |
| RA | 3,849,610 | G→A | S176F (TCT→TTT) | uhpB ← | sensory histidine kinase UhpB |
| MC JC | 3,898,712 | Δ13 bp | coding (670‑682/723 nt) | yieK ← | putative glucosamine‑6‑phosphate deaminase YieK |
| RA | 3,905,097 | G→A | F167F (TTC→TTT) | bglF ← | beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase |
| RA | 3,910,989 | T→C | E179E (GAA→GAG) | pstS ← | phosphate ABC transporter periplasmic binding protein |
| RA | 3,929,767 | G→A | P443S (CCT→TCT) | ravA ← | regulatory ATPase RavA |
| RA | 3,931,797 | G→A | G161D (GGC→GAC) | kup → | K(+):H(+) symporter Kup |
| RA | 3,935,229 | G→A | Q484Q (CAG→CAA) | rbsA → | ribose ABC transporter ATP binding subunit |
| RA | 3,937,366 | C→T | P25S (CCT→TCT) | rbsK → | ribokinase |
| RA | 3,948,012 | G→T | intergenic (‑45/‑74) | hdfR ← / → maoP | DNA‑binding transcriptional dual regulator HdfR/macrodomain Ori protein |
| RA | 3,962,320 | G→A | E548E (GAG→GAA) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 3,967,102 | C→T | A229V (GCT→GTT) | rho → | transcription termination factor Rho |
| RA | 3,979,885 | C→T | L429F (CTT→TTT) | wzyE → | enterobacterial common antigen polymerase |
| RA | 3,982,057 | G→A | A391T (GCG→ACG) | yifK → | putative transporter YifK |
| RA | 3,982,233 | C→T | G449G (GGC→GGT) | yifK → | putative transporter YifK |
| RA | 3,982,684 | (C)8→9 | noncoding (79/87 nt) | leuT → | tRNA‑Leu |
| RA | 3,987,625 | C→T | K86K (AAG→AAA) | hemY ← | protein HemY |
| RA | 3,988,232 | G→A | L279L (CTG→TTG) | hemX ← | PF04375 family protein HemX |
| RA | 3,993,453 | G→A | E767E (GAG→GAA) | cyaA → | adenylate cyclase |
| RA | 3,993,803 | G→A | T86I (ACC→ATC) | cyaY ← | frataxin CyaY |
| RA | 3,999,198 | G→A | A406T (GCC→ACC) | uvrD → | DNA helicase II |
| RA | 4,003,789 | C→T | W130* (TGG→TGA) | rarD ← | putative transporter RarD |
| RA | 4,007,155 | G→A | G431E (GGG→GAG) | recQ → | ATP‑dependent DNA helicase RecQ |
| RA | 4,020,978 | G→A | V251V (GTG→GTA) | ubiB → | ubiquinone biosynthesis protein UbiB |
| RA | 4,021,067 | G→A | R281H (CGC→CAC) | ubiB → | ubiquinone biosynthesis protein UbiB |
| RA | 4,025,224 | G→A | Q79Q (CAG→CAA) | ubiD → | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| RA | 4,031,554 | G→A | V132M (GTG→ATG) | pepQ → | Xaa‑Pro dipeptidase |
| RA | 4,033,929 | G→A | G262E (GGG→GAG) | trkH → | K(+) transporter TrkH |
| RA | 4,035,599 | G→A | noncoding (69/1542 nt) | rrsA → | 16S ribosomal RNA |
| RA | 4,038,899 | G→A | noncoding (1381/2905 nt) | rrlA → | 23S ribosomal RNA |
| RA | 4,039,635 | G→A | noncoding (2117/2905 nt) | rrlA → | 23S ribosomal RNA |
| RA | 4,042,171 | G→A | E35K (GAG→AAG) | yihD → | DUF1040 domain‑containing protein YihD |
| RA | 4,046,082 | G→A | S174F (TCT→TTT) | yihG ← | 1‑acylglycerol‑3‑phosphate O‑acyltransferase YihG |
| RA | 4,048,504 | G→A | W513* (TGG→TGA) | polA → | DNA polymerase I |
| RA | 4,050,592 | G→A | T58T (ACC→ACT) | yihA ← | GTP‑binding protein YihA |
| RA | 4,063,412 | G→A | G389D (GGC→GAC) | yihN → | putative transporter YihN |
| RA | 4,065,084 | G→A | S228L (TCA→TTA) | yihO ← | putative sulfoquinovose transporter |
| JC | 4,123,824 | Δ8 bp | coding (626‑633/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,130,929 | C→T | T365T (ACC→ACT) | metL → | fused aspartate kinase/homoserine dehydrogenase 2 |
| RA | 4,157,011 | G→A | E54E (GAG→GAA) | argH → | argininosuccinate lyase |
| RA | 4,157,435 | G→A | G196S (GGC→AGC) | argH → | argininosuccinate lyase |
| RA | 4,160,102 | C→T | S230N (AGT→AAT) | sthA ← | soluble pyridine nucleotide transhydrogenase |
| JC | 4,180,675 | Δ15 bp | coding (116‑130/366 nt) | rplL → | 50S ribosomal subunit protein L12 |
| RA | 4,193,113 | C→T | G155D (GGC→GAC) | thiF ← | sulfur carrier protein ThiS adenylyltransferase |
| RA | 4,197,052 | G→A | Q50Q (CAG→CAA) | nudC → | RNA decapping hydrolase |
| RA | 4,197,479 | C→T | P193S (CCG→TCG) | nudC → | RNA decapping hydrolase |
| RA | 4,197,628 | C→T | R242R (CGC→CGT) | nudC → | RNA decapping hydrolase |
| RA | 4,199,949 | C→T | A149V (GCT→GTT) | yjaG → | DUF416 domain‑containing protein YjaG |
| RA | 4,200,836 | C→T | L91F (CTC→TTC) | yjaH → | DUF1481 domain‑containing protein YjaH |
| RA | 4,202,268 | C→T | L115F (CTC→TTC) | zraS → | sensor histidine kinase ZraS |
| RA | 4,205,740 | C→T | K64K (AAG→AAA) | purD ← | phosphoribosylamine‑‑glycine ligase |
| RA | 4,208,302 | C→T | noncoding (156/1542 nt) | rrsE → | 16S ribosomal RNA |
| RA | 4,226,531 | C→T | P902S (CCA→TCA) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,271,791 | C→T | G694D (GGT→GAT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,287,372 | G→T | intergenic (‑1/‑239) | acs ← / → ytcB | acetyl‑CoA synthetase (AMP‑forming)/protein YtcB |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,478,030 | G→A | A94A (GCC→GCT) | argI ← | ornithine carbamoyltransferase ArgI |
| RA | 4,548,969 | C→G | N54K (AAC→AAG) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| RA | 4,610,388 | T→C | Y325Y (TAT→TAC) | prfC → | peptide chain release factor RF3 |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257886 | 258675–257909 | 24–790 | 118 [0] | [0] 77 | [crl]–insA9 | [crl],insB9,insA9 |
| * | * | ÷ | NC_000913 | 1196299 | 1211431 | 15133 | 23 [22] | [22] 24 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978504 | 10–776 | 95 [0] | [0] 107 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 2755533 | 2755721 | 189 | 23 [22] | [22] 23 | [ssrA] | [ssrA] |
| * | * | ÷ | NC_000913 | 3423844–3424230 | 3424446–3424238 | 9–603 | 23 [22] | [22] 24 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257885 | 0 (0.000) | 118 (1.350) | 85/598 | 0.0 | 100% | pseudogene (57/71 nt) | crl | RNA polymerase holoenzyme assembly factor Crl |
| ? | NC_000913 | 391709 = | NA (NA) | noncoding (1258/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 258676 = | 0 (0.000) | 70 (0.850) +CGAATATACGGGCCTAG |
54/564 | 0.3 | 100% | pseudogene (1/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl |
| ? | NC_000913 | = 392966 | NA (NA) | noncoding (1/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 391883 = | NA (NA) | 55 (0.630) | 42/598 | 0.8 | NA | noncoding (1084/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 392966 | NA (NA) | noncoding (1/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 567858 = | 8 (0.090) | 80 (0.920) | 60/596 | 0.2 | 90.9% | noncoding (1082/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 568034 | NA (NA) | noncoding (1258/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 95 (1.090) | 59/598 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 106 (1.210) | 79/598 | 0.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | 3720633 = | NA (NA) | 99 (1.130) | 67/598 | 0.1 | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | 3762460 = | NA (NA) | coding (278/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3722075 | NA (NA) | 125 (1.430) | 68/598 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3762462 | 0 (0.000) | coding (280/4134 nt) | rhsA | rhs element protein RhsA | |||||