mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 310 | (T)9→8 | intergenic (+55/‑27) | thrL → / → thrA | thr operon leader peptide/fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 393 | T→G | R19R (CGT→CGG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 588 | G→A | G84G (GGG→GGA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 774 | T→C | T146T (ACT→ACC) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 867 | C→T | S177S (AGC→AGT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 939 | G→A | V201V (GTG→GTA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 966 | T→C | S210S (TCT→TCC) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 969 | T→G | A211A (GCT→GCG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,206 | A→T | A290A (GCA→GCT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,278 | C→T | N314N (AAC→AAT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,299 | T→C | S321S (TCT→TCC) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,302 | T→C | G322G (GGT→GGC) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,323 | C→T | V329V (GTC→GTT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,341 | C→G | V335V (GTC→GTG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,407 | C→T | S357S (AGC→AGT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,425 | A→G | P363P (CCA→CCG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,509 | A→G | A391A (GCA→GCG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,593 | A→G | A419A (GCA→GCG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,797 | G→A | Q487Q (CAG→CAA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,860 | T→A | A508A (GCT→GCA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,875 | A→G | V513V (GTA→GTG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,884 | T→A | L516L (CTT→CTA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,038 | C→T | L568L (CTG→TTG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,108 | A→T | Q591L (CAG→CTG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,116 | T→C | Y594H (TAT→CAT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,211 | A→T | A625A (GCA→GCT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,247 | T→A | S637S (TCT→TCA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,307 | C→T | T657T (ACC→ACT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,310 | G→T | T658T (ACG→ACT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,343 | C→T | D669D (GAC→GAT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,373 | G→A | V679V (GTG→GTA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,382 | A→G | K682K (AAA→AAG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,469 | C→T | A711A (GCC→GCT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,508 | A→G | Q724Q (CAA→CAG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,595 | C→T | G753G (GGC→GGT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,597 | T→C | V754A (GTC→GCC) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,676 | C→T | F780F (TTC→TTT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,709 | A→G | V791V (GTA→GTG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 2,760 | T→C | A808A (GCT→GCC) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 3,025 | A→G | E75E (GAA→GAG) | thrB → | homoserine kinase |
| RA | 3,028 | G→T | L76L (CTG→CTT) | thrB → | homoserine kinase |
| RA | 3,031 | T→C | G77G (GGT→GGC) | thrB → | homoserine kinase |
| RA | 3,055 | C→T | T85T (ACC→ACT) | thrB → | homoserine kinase |
| RA | 3,073 | G→A | P91P (CCG→CCA) | thrB → | homoserine kinase |
| RA | 3,097 | T→C | S99S (AGT→AGC) | thrB → | homoserine kinase |
| RA | 3,142 | C→T | C114C (TGC→TGT) | thrB → | homoserine kinase |
| RA | 3,196 | C→A | G132G (GGC→GGA) | thrB → | homoserine kinase |
| RA | 3,199 | T→A | R133R (CGT→CGA) | thrB → | homoserine kinase |
| RA | 3,244 | C→T | L148L (CTC→CTT) | thrB → | homoserine kinase |
| RA | 3,424 | A→T | A208A (GCA→GCT) | thrB → | homoserine kinase |
| RA | 3,520 | A→T | P240P (CCA→CCT) | thrB → | homoserine kinase |
| RA | 3,547 | C→T | V249V (GTC→GTT) | thrB → | homoserine kinase |
| RA | 3,622 | A→T | E274D (GAA→GAT) | thrB → | homoserine kinase |
| RA | 3,763 | C→T | N10N (AAC→AAT) | thrC → | threonine synthase |
| RA | 3,937 | A→G | P68P (CCA→CCG) | thrC → | threonine synthase |
| RA | 4,102 | T→C | G123G (GGT→GGC) | thrC → | threonine synthase |
| RA | 4,336 | A→G | E201E (GAA→GAG) | thrC → | threonine synthase |
| RA | 4,351 | A→G | L206L (CTA→CTG) | thrC → | threonine synthase |
| RA | 4,363 | G→A | S210S (TCG→TCA) | thrC → | threonine synthase |
| RA | 4,420 | T→A | A229A (GCT→GCA) | thrC → | threonine synthase |
| RA | 4,441 | 2 bp→AG | coding (708‑709/1287 nt) | thrC → | threonine synthase |
| RA | 4,780 | T→C | T349T (ACT→ACC) | thrC → | threonine synthase |
| RA | 4,804 | T→G | A357A (GCT→GCG) | thrC → | threonine synthase |
| RA | 4,822 | T→C | D363D (GAT→GAC) | thrC → | threonine synthase |
| RA | 5,067 | Δ1 bp | intergenic (+47/‑167) | thrC → / → yaaX | threonine synthase/DUF2502 domain‑containing protein YaaX |
| RA | 5,099 | T→C | intergenic (+79/‑135) | thrC → / → yaaX | threonine synthase/DUF2502 domain‑containing protein YaaX |
| RA | 5,171 | C→T | intergenic (+151/‑63) | thrC → / → yaaX | threonine synthase/DUF2502 domain‑containing protein YaaX |
| RA | 5,183 | A→C | intergenic (+163/‑51) | thrC → / → yaaX | threonine synthase/DUF2502 domain‑containing protein YaaX |
| RA | 5,234 | G→A | M1M (GTG→ATG) † | yaaX → | DUF2502 domain‑containing protein YaaX |
| RA | 5,442 | T→C | L70P (CTA→CCA) | yaaX → | DUF2502 domain‑containing protein YaaX |
| RA | 5,603 | T→G | intergenic (+73/+80) | yaaX → / ← yaaA | DUF2502 domain‑containing protein YaaX/DNA binding and peroxide stress response protein YaaA |
| RA | 5,642 | A→C | intergenic (+112/+41) | yaaX → / ← yaaA | DUF2502 domain‑containing protein YaaX/DNA binding and peroxide stress response protein YaaA |
| RA | 5,732 | T→G | D243A (GAT→GCT) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| RA | 5,806 | G→A | F218F (TTC→TTT) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| RA | 5,851 | G→T | I203I (ATC→ATA) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| RA | 6,106 | G→C | L118L (CTC→CTG) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| RA | 6,239 | G→T | A74E (GCG→GAG) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| RA | 6,349 | C→T | E37E (GAG→GAA) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| RA | 6,502 | T→A | intergenic (‑43/+27) | yaaA ← / ← yaaJ | DNA binding and peroxide stress response protein YaaA/putative transporter YaaJ |
| RA | 6,574 | A→G | G462G (GGT→GGC) | yaaJ ← | putative transporter YaaJ |
| RA | 6,595 | T→C | P455P (CCA→CCG) | yaaJ ← | putative transporter YaaJ |
| RA | 6,748 | G→A | S404S (AGC→AGT) | yaaJ ← | putative transporter YaaJ |
| RA | 6,850 | A→G | Y370Y (TAT→TAC) | yaaJ ← | putative transporter YaaJ |
| RA | 6,898 | A→G | L354L (CTT→CTC) | yaaJ ← | putative transporter YaaJ |
| RA | 6,933 | G→A | L343L (CTA→TTA) | yaaJ ← | putative transporter YaaJ |
| RA | 7,132 | A→C | G276G (GGT→GGG) | yaaJ ← | putative transporter YaaJ |
| RA | 7,297 | T→C | V221V (GTA→GTG) | yaaJ ← | putative transporter YaaJ |
| RA | 7,342 | G→C | G206G (GGC→GGG) | yaaJ ← | putative transporter YaaJ |
| RA | 7,384 | T→C | A192A (GCA→GCG) | yaaJ ← | putative transporter YaaJ |
| RA | 7,395 | T→C | T189A (ACT→GCT) | yaaJ ← | putative transporter YaaJ |
| RA | 7,414 | G→A | G182G (GGC→GGT) | yaaJ ← | putative transporter YaaJ |
| RA | 7,456 | G→T | R168R (CGC→CGA) | yaaJ ← | putative transporter YaaJ |
| RA | 7,459 | G→C | A167A (GCC→GCG) | yaaJ ← | putative transporter YaaJ |
| RA | 7,474 | T→C | Q162Q (CAA→CAG) | yaaJ ← | putative transporter YaaJ |
| RA | 7,479 | C→T | V161I (GTT→ATT) | yaaJ ← | putative transporter YaaJ |
| RA | 7,498 | A→G | Y154Y (TAT→TAC) | yaaJ ← | putative transporter YaaJ |
| RA | 7,598 | A→G | V121A (GTC→GCC) | yaaJ ← | putative transporter YaaJ |
| RA | 7,600 | G→A | D120D (GAC→GAT) | yaaJ ← | putative transporter YaaJ |
| RA | 7,618 | T→C | Q114Q (CAA→CAG) | yaaJ ← | putative transporter YaaJ |
| RA | 7,624 | C→G | L112L (CTG→CTC) | yaaJ ← | putative transporter YaaJ |
| RA | 7,627 | A→G | S111S (TCT→TCC) | yaaJ ← | putative transporter YaaJ |
| RA | 7,681 | A→G | F93F (TTT→TTC) | yaaJ ← | putative transporter YaaJ |
| RA | 7,711 | A→T | A83A (GCT→GCA) | yaaJ ← | putative transporter YaaJ |
| RA | 7,939 | G→A | F7F (TTC→TTT) | yaaJ ← | putative transporter YaaJ |
| RA | 8,963 | G→T | L242L (CTG→CTT) | talB → | transaldolase B |
| RA | 8,975 | 2 bp→TA | coding (738‑739/954 nt) | talB → | transaldolase B |
| RA | 8,996 | G→T | A253A (GCG→GCT) | talB → | transaldolase B |
| RA | 9,488 | G→A | L61L (CTG→CTA) | mog → | molybdopterin adenylyltransferase |
| RA | 9,623 | C→A | I106I (ATC→ATA) | mog → | molybdopterin adenylyltransferase |
| RA | 9,665 | G→T | V120V (GTG→GTT) | mog → | molybdopterin adenylyltransferase |
| RA | 9,668 | C→T | G121G (GGC→GGT) | mog → | molybdopterin adenylyltransferase |
| RA | 9,754 | A→C | E150A (GAG→GCG) | mog → | molybdopterin adenylyltransferase |
| RA | 9,839 | G→A | P178P (CCG→CCA) | mog → | molybdopterin adenylyltransferase |
| RA | 9,851 | A→T | A182A (GCA→GCT) | mog → | molybdopterin adenylyltransferase |
| RA | 10,006 | G→A | S163S (AGC→AGT) | satP ← | acetate/succinate:H(+) symporter |
| RA | 10,015 | G→A | C160C (TGC→TGT) | satP ← | acetate/succinate:H(+) symporter |
| RA | 10,024 | C→A | G157G (GGG→GGT) | satP ← | acetate/succinate:H(+) symporter |
| RA | 10,099 | G→A | T132T (ACC→ACT) | satP ← | acetate/succinate:H(+) symporter |
| RA | 10,260 | G→A | L79L (CTG→TTG) | satP ← | acetate/succinate:H(+) symporter |
| RA | 10,336 | A→G | A53A (GCT→GCC) | satP ← | acetate/succinate:H(+) symporter |
| RA | 10,548 | T→A | intergenic (‑54/+95) | satP ← / ← yaaW | acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW |
| RA | 10,637 | C→A | intergenic (‑143/+6) | satP ← / ← yaaW | acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW |
| RA | 10,642 | A→G | intergenic (‑148/+1) | satP ← / ← yaaW | acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW |
| RA | 10,703 | C→T | T218T (ACG→ACA) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,718 | G→A | S213S (AGC→AGT) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,747 | G→A | L204L (CTA→TTA) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,751 | C→T | A202A (GCG→GCA) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,754 | A→G | G201G (GGT→GGC) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,757 | T→C | V200V (GTA→GTG) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,772 | C→A | G195G (GGG→GGT) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,802 | T→C | V185V (GTA→GTG) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 10,840 | G→A | L173L (CTG→TTG) S4N (AGT→AAT) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 10,865 | A→G | G164G (GGT→GGC) T12T (ACA→ACG) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 10,973 | T→A | K128N (AAA→AAT) I48I (ATT→ATA) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 10,985 | A→G | N124N (AAT→AAC) V52V (GTA→GTG) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 11,021 | T→C | E112E (GAA→GAG) I64I (ATT→ATC) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 11,063 | C→T | K98K (AAG→AAA) R78R (CGC→CGT) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 11,156 | G→A | A67A (GCC→GCT) P109P (CCG→CCA) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 11,225 | C→T | M44I (ATG→ATA) R132R (CGC→CGT) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 11,366 | C→T | intergenic (‑10/+16) | yaaW ← / ← yaaI | putative enzyme‑specific chaperone YaaW/DUF2541 domain‑containing protein YaaI |
| RA | 11,439 | C→G | S116S (TCG→TCC) | yaaI ← | DUF2541 domain‑containing protein YaaI |
| RA | 11,481 | G→A | S102S (AGC→AGT) | yaaI ← | DUF2541 domain‑containing protein YaaI |
| RA | 11,541 | G→A | S82S (AGC→AGT) | yaaI ← | DUF2541 domain‑containing protein YaaI |
| RA | 11,695 | G→A | A31V (GCC→GTC) | yaaI ← | DUF2541 domain‑containing protein YaaI |
| RA | 11,814 | G→A | intergenic (‑28/‑349) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| RA | 11,854 | A→G | intergenic (‑68/‑309) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| RA | 11,861 | C→T | intergenic (‑75/‑302) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| RA | 11,925 | A→C | intergenic (‑139/‑238) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| RA | 12,026 | T→G | intergenic (‑240/‑137) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| RA | 12,237 | C→T | R25R (CGC→CGT) | dnaK → | chaperone protein DnaK |
| RA | 12,309 | A→G | L49L (CTA→CTG) | dnaK → | chaperone protein DnaK |
| RA | 12,357 | T→C | T65T (ACT→ACC) | dnaK → | chaperone protein DnaK |
| RA | 12,384 | T→C | G74G (GGT→GGC) | dnaK → | chaperone protein DnaK |
| RA | 12,507 | T→C | I115I (ATT→ATC) | dnaK → | chaperone protein DnaK |
| RA | 12,714 | C→T | G184G (GGC→GGT) | dnaK → | chaperone protein DnaK |
| RA | 12,846 | G→T | G228G (GGG→GGT) | dnaK → | chaperone protein DnaK |
| RA | 12,879 | T→C | Y239Y (TAT→TAC) | dnaK → | chaperone protein DnaK |
| RA | 13,014 | A→G | P284P (CCA→CCG) | dnaK → | chaperone protein DnaK |
| RA | 13,029 | C→T | D289D (GAC→GAT) | dnaK → | chaperone protein DnaK |
| RA | 13,320 | A→G | V386V (GTA→GTG) | dnaK → | chaperone protein DnaK |
| RA | 13,539 | A→G | L459L (CTA→CTG) | dnaK → | chaperone protein DnaK |
| RA | 13,866 | G→A | A568A (GCG→GCA) | dnaK → | chaperone protein DnaK |
| RA | 13,932 | A→G | E590E (GAA→GAG) | dnaK → | chaperone protein DnaK |
| RA | 14,223 | G→A | R19H (CGT→CAT) | dnaJ → | chaperone protein DnaJ |
| RA | 14,232 | G→A | R22K (AGA→AAA) | dnaJ → | chaperone protein DnaJ |
| RA | 14,401 | C→T | G78G (GGC→GGT) | dnaJ → | chaperone protein DnaJ |
| RA | 14,647 | T→C | T160T (ACT→ACC) | dnaJ → | chaperone protein DnaJ |
| RA | 14,686 | C→T | R173R (CGC→CGT) | dnaJ → | chaperone protein DnaJ |
| RA | 14,698 | C→T | F177F (TTC→TTT) | dnaJ → | chaperone protein DnaJ |
| RA | 14,701 | T→C | A178A (GCT→GCC) | dnaJ → | chaperone protein DnaJ |
| RA | 14,704 | A→G | V179V (GTA→GTG) | dnaJ → | chaperone protein DnaJ |
| RA | 14,956 | G→C | L263L (CTG→CTC) | dnaJ → | chaperone protein DnaJ |
| RA | 15,073 | A→T | L302L (CTA→CTT) | dnaJ → | chaperone protein DnaJ |
| RA | 15,172 | A→G | E335E (GAA→GAG) | dnaJ → | chaperone protein DnaJ |
| RA | 15,174 | G→A | R336K (AGG→AAG) | dnaJ → | chaperone protein DnaJ |
| RA | 15,226 | C→T | G353G (GGC→GGT) | dnaJ → | chaperone protein DnaJ |
| RA | 15,328 | C→T | intergenic (+30/‑117) | dnaJ → / → insL1 | chaperone protein DnaJ/IS186/IS421 family transposase |
| RA | 15,338 | A→T | intergenic (+40/‑107) | dnaJ → / → insL1 | chaperone protein DnaJ/IS186/IS421 family transposase |
| RA | 15,369 | T→A | intergenic (+71/‑76) | dnaJ → / → insL1 | chaperone protein DnaJ/IS186/IS421 family transposase |
| RA | 16,749 | T→A | intergenic (+192/+2) | insL1 → / ← hokC | IS186/IS421 family transposase/protein HokC |
| RA | 16,966 | A→G | noncoding (15/59 nt) | sokC → | small regulatory RNA antitoxin SokC |
| RA | 16,981 | G→A | noncoding (30/59 nt) | sokC → | small regulatory RNA antitoxin SokC |
| RA | 17,039 | C→T | intergenic (+29/‑450) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,085 | T→C | intergenic (+75/‑404) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,175 | C→T | intergenic (+165/‑314) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,219 | G→T | intergenic (+209/‑270) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,228 | 2 bp→AT | intergenic (+218/‑260) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,231 | T→A | intergenic (+221/‑258) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,245 | C→G | intergenic (+235/‑244) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,281 | G→A | intergenic (+271/‑208) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,309 | A→G | intergenic (+299/‑180) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,348 | (A)5→6 | intergenic (+338/‑141) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,350 | G→T | intergenic (+340/‑139) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,383 | A→G | intergenic (+373/‑106) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,385 | C→A | intergenic (+375/‑104) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,399 | A→G | intergenic (+389/‑90) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,436 | C→T | intergenic (+426/‑53) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| RA | 17,578 | C→T | N30N (AAC→AAT) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 17,809 | G→T | V107V (GTG→GTT) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 17,830 | T→C | A114A (GCT→GCC) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 17,893 | T→C | A135A (GCT→GCC) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 17,908 | A→G | V140V (GTA→GTG) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 18,093 | C→T | A202V (GCA→GTA) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 18,118 | T→G | L210L (CTT→CTG) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 18,127 | G→A | V213V (GTG→GTA) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 18,169 | T→C | T227T (ACT→ACC) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 18,253 | G→A | L255L (TTG→TTA) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 18,322 | C→T | G278G (GGC→GGT) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 18,477 | T→C | V330A (GTG→GCG) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 19,014 | C→T | G100G (GGC→GGT) | nhaR → | DNA‑binding transcriptional activator NhaR |
| RA | 19,398 | T→G | A228A (GCT→GCG) | nhaR → | DNA‑binding transcriptional activator NhaR |
| RA | 19,613 | T→C | V300A (GTG→GCG) | nhaR → | DNA‑binding transcriptional activator NhaR |
| RA | 19,627 | G→C | intergenic (+7/+184) | nhaR → / ← insB1 | DNA‑binding transcriptional activator NhaR/IS1 family protein InsB |
| RA | 19,634 | (C)5→6 | intergenic (+14/+177) | nhaR → / ← insB1 | DNA‑binding transcriptional activator NhaR/IS1 family protein InsB |
| RA | 19,670 | T→A | intergenic (+50/+141) | nhaR → / ← insB1 | DNA‑binding transcriptional activator NhaR/IS1 family protein InsB |
| RA | 19,715 | G→A | intergenic (+95/+96) | nhaR → / ← insB1 | DNA‑binding transcriptional activator NhaR/IS1 family protein InsB |
| RA | 20,590 | T→C | intergenic (‑82/+225) | insA1 ← / ← rpsT | IS1 family protein InsA/30S ribosomal subunit protein S20 |
| RA | 20,600 | G→A | intergenic (‑92/+215) | insA1 ← / ← rpsT | IS1 family protein InsA/30S ribosomal subunit protein S20 |
| RA | 20,605 | Δ1 bp | intergenic (‑97/+210) | insA1 ← / ← rpsT | IS1 family protein InsA/30S ribosomal subunit protein S20 |
| JC | 20,703 | +GCAAGAACCTGCAA | intergenic (‑195/+112) | insA1 ← / ← rpsT | IS1 family protein InsA/30S ribosomal subunit protein S20 |
| RA | 21,617 | A→C | R71R (AGA→CGG) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 21,619 | A→G | R71R (AGA→CGG) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 21,750 | A→T | H115L (CAT→CTT) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 21,895 | C→T | R163R (CGC→CGT) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 21,910 | C→T | A168A (GCC→GCT) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 21,922 | C→G | A172A (GCC→GCG) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 21,925 | T→G | L173L (CTT→CTG) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 21,952 | G→A | E182E (GAG→GAA) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 22,048 | G→A | L214L (CTG→CTA) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| RA | 22,373 | T→C | intergenic (+25/‑18) | ribF → / → ileS | bifunctional riboflavin kinase/FMN adenylyltransferase/isoleucine‑‑tRNA ligase |
| RA | 22,468 | C→G | P26P (CCC→CCG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 22,942 | A→G | P184P (CCA→CCG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 22,945 | T→A | V185V (GTT→GTA) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,032 | C→T | F214F (TTC→TTT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,038 | A→G | A216A (GCA→GCG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,104 | A→G | V238V (GTA→GTG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,116 | C→T | T242T (ACC→ACT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,137 | C→G | A249A (GCC→GCG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,161 | A→T | P257P (CCA→CCT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,270 | G→A | G294S (GGC→AGC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,297 | C→T | L303L (CTG→TTG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,803 | T→C | G471G (GGT→GGC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,860 | T→C | L490L (CTT→CTC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,896 | 2 bp→TA | coding (1506‑1507/2817 nt) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,899 | T→C | D503D (GAT→GAC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,956 | T→C | D522D (GAT→GAC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,962 | C→T | Y524Y (TAC→TAT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,977 | C→T | D529D (GAC→GAT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,980 | 2 bp→TC | coding (1590‑1591/2817 nt) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,983 | G→C | L531F (TTG→TTC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 23,986 | T→C | D532D (GAT→GAC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,085 | A→G | Q565Q (CAA→CAG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,091 | C→T | R567R (CGC→CGT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,094 | C→T | G568G (GGC→GGT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,133 | G→A | K581K (AAG→AAA) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,136 | T→C | G582G (GGT→GGC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,217 | T→C | N609N (AAT→AAC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,340 | T→C | D650D (GAT→GAC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,616 | T→C | S742S (AGT→AGC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,646 | A→G | L752L (CTA→CTG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,670 | G→T | V760V (GTG→GTT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,781 | C→T | G797G (GGC→GGT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,799 | G→A | A803A (GCG→GCA) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,935 | T→G | S849A (TCG→GCG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 24,977 | C→T | L863L (CTG→TTG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 25,598 | A→G | D131G (GAC→GGC) | lspA → | lipoprotein signal peptidase |
| RA | 25,677 | G→A | L157L (TTG→TTA) | lspA → | lipoprotein signal peptidase |
| RA | 25,685 | G→A | R160K (AGA→AAA) | lspA → | lipoprotein signal peptidase |
| RA | 26,534 | T→C | S86S (AGT→AGC) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,606 | T→C | S110S (AGT→AGC) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,609 | C→T | R111R (CGC→CGT) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,621 | A→G | E115E (GAA→GAG) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,624 | T→G | S116S (TCT→TCG) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,636 | T→C | G120G (GGT→GGC) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,648 | C→T | H124H (CAC→CAT) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,663 | G→T | G129G (GGG→GGT) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 26,666 | A→G | T130T (ACA→ACG) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 27,026 | C→T | D250D (GAC→GAT) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 27,104 | G→A | Q276Q (CAG→CAA) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 27,367 | A→C | A25A (GCA→GCC) | rihC → | ribonucleoside hydrolase RihC |
| RA | 45,950 | G→A | L48L (CTG→CTA) | yaaU → | putative transporter YaaU |
| RA | 45,978 | C→T | L58L (CTG→TTG) | yaaU → | putative transporter YaaU |
| RA | 46,028 | T→C | G74G (GGT→GGC) | yaaU → | putative transporter YaaU |
| RA | 46,247 | T→C | I147I (ATT→ATC) | yaaU → | putative transporter YaaU |
| RA | 46,253 | G→C | A149A (GCG→GCC) | yaaU → | putative transporter YaaU |
| RA | 46,277 | T→C | C157C (TGT→TGC) | yaaU → | putative transporter YaaU |
| RA | 46,448 | C→A | I214I (ATC→ATA) | yaaU → | putative transporter YaaU |
| RA | 46,634 | G→T | G276G (GGG→GGT) | yaaU → | putative transporter YaaU |
| RA | 46,652 | A→G | A282A (GCA→GCG) | yaaU → | putative transporter YaaU |
| RA | 46,655 | A→G | L283L (CTA→CTG) | yaaU → | putative transporter YaaU |
| RA | 46,661 | T→C | N285N (AAT→AAC) | yaaU → | putative transporter YaaU |
| RA | 46,790 | A→G | L328L (CTA→CTG) | yaaU → | putative transporter YaaU |
| RA | 46,943 | T→C | S379S (AGT→AGC) | yaaU → | putative transporter YaaU |
| RA | 46,976 | A→G | L390L (CTA→CTG) | yaaU → | putative transporter YaaU |
| RA | 47,099 | G→A | Q431Q (CAG→CAA) | yaaU → | putative transporter YaaU |
| RA | 47,434 | T→C | H63H (CAT→CAC) | kefF → | regulator of KefC‑mediated potassium transport and quinone oxidoreductase |
| RA | 48,033 | T→G | C89G (TGT→GGT) | kefC → | K(+) : H(+) antiporter KefC |
| RA | 66,635 | C→T | intergenic (‑85/+200) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 71,170 | T→C | S262P (TCG→CCG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 81,102 | G→A | S286L (TCG→TTG) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 154,182 | C→T | L415L (CTG→CTA) | htrE ← | putative fimbrial usher protein HtrE |
| RA | 156,068 | A→G | V45A (GTA→GCA) | yadV ← | putative fimbrial chaperone YadV |
| RA | 193,327 | C→T | D152D (GAC→GAT) | frr → | ribosome‑recycling factor |
| JC JC | 231,371 | IS5 (–) +4 bp | coding (250‑253/801 nt) | yafD → | endonuclease/exonuclease/phosphatase domain‑containing protein YafD |
| MC JC | 255,892 | Δ18,063 bp | IS5‑mediated | gpt–[ykfC] | 26 genes gpt, frsA, crl, insB9, insA9, crl, phoE, proB, proA, thrW, ykfI, yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI1, insN, eyeA, [ykfC] |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 292,019 | C→T | L174L (CTA→TTA) | yagJ → | protein YagJ |
| JC JC | 293,207 | IS2 (–) +5 bp | intergenic (‑259/+9) | yagK ← / ← yagL | uncharacterized protein YagK/resolvase‑like catalytic domain‑containing protein YagL |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 364,170 | 2 bp→AA | coding (2135‑2136/3075 nt) | lacZ ← | beta‑galactosidase |
| RA | 367,573 | G→A | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| RA | 405,538 | (G)5→4 | coding (107/810 nt) | proC ← | pyrroline‑5‑carboxylate reductase |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 491,939 | C→T | S176S (AGC→AGT) | apt → | adenine phosphoribosyltransferase |
| MC JC | 575,786 | Δ3,398 bp | IS5‑mediated | [nmpC]–borD | [nmpC], essD, rrrD, rzpD, rzoD, borD |
| RA | 582,597 | C→T | intergenic (+500/‑278) | tfaD → / → tfaX | putative tail fiber assembly protein TfaD/protein TfaX |
| RA | 602,835 | G→A | A293T (GCT→ACT) | pheP → | phenylalanine:H(+) symporter PheP |
| RA | 674,259 | G→A | C175C (TGC→TGT) | leuS ← | leucine‑‑tRNA ligase |
| RA | 677,829 | T→C | W139R (TGG→CGG) | djlB → | J domain‑containing protein DjlB |
| RA | 694,941 | G→A | L5L (CTC→CTT) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 696,470 | C→T | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 708,774 | G→A | A147A (GCG→GCA) | chiP → | chitooligosaccharide outer membrane channel |
| RA | 721,604 | G→A | R44C (CGT→TGT) | kdpE ← | DNA‑binding transcriptional activator KdpE |
| RA | 780,624 | C→T | noncoding (71/76 nt) | lysT → | tRNA‑Lys |
| RA | 789,580 | C→A | E134* (GAA→TAA) | galK ← | galactokinase |
| JC JC | 820,914 | IS5 (+) +4 bp | coding (122‑125/714 nt) | ybhM → | Bax1‑I family protein YbhM |
| RA | 822,527 | C→T | E405K (GAA→AAA) | clsB ← | cardiolipin synthase B |
| RA | 882,731 | C→A | E2* (GAA→TAA) | deoR ← | DNA‑binding transcriptional repressor DeoR |
| RA | 883,396 | C→T | intergenic (‑8/‑277) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 908,169 | C→T | R38R (AGG→AGA) | ybjT ← | putative NAD(P)‑binding protein YbjT |
| RA | 968,252 | G→A | K544K (AAG→AAA) | msbA → | ATP‑binding lipopolysaccharide transport protein |
| RA | 1,054,855 | G→A | Q442* (CAG→TAG) | torS ← | sensor histidine kinase TorS |
| RA | 1,066,699 | C→T | A372V (GCC→GTC) | agp → | glucose‑1‑phosphatase |
| RA | 1,075,234 | C→T | V1217I (GTA→ATA) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,075,528 | C→T | A1119T (GCA→ACA) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,078,268 | A→T | F205L (TTT→TTA) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,086,153 | C→T | G123R (GGG→AGG) | pgaD ← | poly‑N‑acetyl‑D‑glucosamine synthase subunit PgaD |
| RA | 1,090,508 | C→T | E594E (GAG→GAA) | pgaA ← | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export outer membrane porin |
| JC JC | 1,105,699 | IS1 (+) +9 bp | coding (286‑294/312 nt) | ymdA → | uncharacterized protein YmdA |
| RA | 1,107,209 | C→T | I285I (ATC→ATT) | clsC → | cardiolipin synthase C |
| RA | 1,109,740 | C→T | L136F (CTT→TTT) | opgG → | osmoregulated periplasmic glucans biosynthesis protein G |
| RA | 1,110,033 | G→A | Q233Q (CAG→CAA) | opgG → | osmoregulated periplasmic glucans biosynthesis protein G |
| RA | 1,112,209 | C→T | D449D (GAC→GAT) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,112,421 | C→T | S520F (TCT→TTT) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,114,389 | C→T | A368T (GCA→ACA) | mdtG ← | efflux pump MdtG |
| RA | 1,115,185 | C→T | G102G (GGG→GGA) | mdtG ← | efflux pump MdtG |
| RA | 1,117,707 | G→A | G301S (GGT→AGT) | trhO → | tRNA U34 hydroxylase TrhO |
| JC JC | 1,118,953 | IS5 (–) +4 bp | coding (91‑94/567 nt) | yceJ ← | putative cytochrome b561 YceJ |
| RA | 1,120,111 | G→A | A159V (GCG→GTG) | solA ← | N‑methyl‑L‑tryptophan oxidase |
| RA | 1,121,547 | G→A | intergenic (‑60/+14) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydroorotase |
| RA | 1,121,762 | G→A | V282V (GTC→GTT) | pyrC ← | dihydroorotase |
| RA | 1,123,823 | 2 bp→AG | coding (231‑232/648 nt) | grxB ← | reduced glutaredoxin 2 |
| RA | 1,126,316 | G→A | E54K (GAA→AAA) | yceH → | DUF480 domain‑containing protein YceH |
| RA | 1,126,518 | C→T | A121V (GCC→GTC) | yceH → | DUF480 domain‑containing protein YceH |
| RA | 1,127,334 | G→A | G177S (GGC→AGC) | yceM → | putative oxidoreductase YceM |
| RA | 1,127,338 | G→A | G178D (GGC→GAC) | yceM → | putative oxidoreductase YceM |
| RA | 1,129,796 | G→A | S12F (TCC→TTC) | flgN ← | flagellar biosynthesis protein FlgN |
| RA | 1,130,210 | G→A | N218N (AAC→AAT) | flgA ← | flagellar basal body P‑ring formation protein FlgA |
| RA | 1,130,803 | C→T | A21T (GCG→ACG) | flgA ← | flagellar basal body P‑ring formation protein FlgA |
| RA | 1,133,273 | G→A | G234S (GGC→AGC) | flgE → | flagellar hook protein FlgE |
| RA | 1,134,466 | C→T | A222V (GCC→GTC) | flgF → | flagellar basal‑body rod protein FlgF |
| RA | 1,138,152 | C→T | T261I (ACC→ATC) | flgJ → | putative peptidoglycan hydrolase FlgJ |
| RA | 1,138,533 | C→T | G52G (GGC→GGT) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,138,831 | C→T | R152C (CGC→TGC) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,141,865 | G→A | P835S (CCG→TCG) | rne ← | ribonuclease E |
| RA | 1,144,974 | C→T | A12V (GCT→GTT) | rluC → | 23S rRNA pseudouridine(955/2504/2580) synthase |
| RA | 1,146,110 | C→T | E162E (GAG→GAA) | yceF ← | m(7)GTP pyrophosphatase |
| RA | 1,146,384 | A→G | V71A (GTA→GCA) | yceF ← | m(7)GTP pyrophosphatase |
| RA | 1,147,792 | T→A | S58T (TCG→ACG) | plsX → | putative phosphate acyltransferase |
| RA | 1,161,403 | G→A | A50V (GCC→GTC) | fhuE ← | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,171,417 | G→A | L850L (CTG→TTG) | mfd ← | transcription‑repair coupling factor |
| RA | 1,176,602 | C→T | P392P (CCC→CCT) | lolC → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,180,126 | G→A | A203T (GCG→ACG) A203T (GCG→ACG) |
cobB → cobB → |
protein‑lysine deacetylase/desuccinylase/lipoamidase protein‑lysine deacetylase/desuccinylase/lipoamidase |
| RA | 1,181,995 | G→A | L279L (CTG→TTG) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,193,141 | G→A | G211G (GGC→GGT) | mnmA ← | tRNA‑specific 2‑thiouridylase |
| RA | 1,194,922 | G→A | T10T (ACC→ACT) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,201,548 | A→C | T18P (ACC→CCA) | ymfI → | uncharacterized protein YmfI |
| RA | 1,201,550 | C→A | T18P (ACC→CCA) | ymfI → | uncharacterized protein YmfI |
| RA | 1,227,656 | G→A | intergenic (‑184/‑25) | pliG ← / → ycgL | inhibitor of g‑type lysozyme/PF05166 family protein YcgL |
| RA | 1,234,947 | A→G | K4E (AAG→GAG) | fadR → | DNA‑binding transcriptional dual regulator FadR |
| JC JC | 1,235,323 | IS2 (+) +5 bp | coding (386‑390/720 nt) | fadR → | DNA‑binding transcriptional dual regulator FadR |
| RA | 1,244,908 | C→T | L61L (CTG→TTG) | ymgE → | PF04226 family protein YmgE |
| RA | 1,252,059 | C→T | P332S (CCG→TCG) | dhaR → | DNA‑binding transcriptional dual regulator DhaR |
| RA | 1,252,663 | C→T | S533F (TCT→TTT) | dhaR → | DNA‑binding transcriptional dual regulator DhaR |
| RA | 1,253,002 | C→T | intergenic (+17/+83) | dhaR → / ← ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| RA | 1,282,857 | C→T | R998R (CGC→CGT) | narG → | nitrate reductase A subunit alpha |
| JC JC | 1,291,151 | IS5 (–) +4 bp | coding (910‑913/1014 nt) | rssB → | regulator of RpoS |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,308,684 | T→C | intergenic (‑39/‑104) | clsA ← / → yciY | cardiolipin synthase A/uncharacterized protein YciY |
| RA | 1,323,798 | G→A | K193K (AAG→AAA) | rnm → | RNase AM |
| RA | 1,325,054 | G→A | W103* (TGG→TGA) | yciQ → | DUF2207 domain‑containing protein YciQ |
| RA | 1,331,059 | 2 bp→AT | coding (12‑13/2598 nt) | topA → | DNA topoisomerase 1 |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,341,542 | G→A | A329T (GCG→ACG) | lapB → | lipopolysaccharide assembly protein B |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,375,737 | G→A | A259T (GCC→ACC) | ycjQ → | D‑guloside 3‑dehydrogenase |
| RA | 1,405,758 | G→A | intergenic (‑7/‑221) | mcaS ← / → smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| MC JC | 1,411,925 | Δ23,060 bp | [ttcA]–ynaM | 34 genes [ttcA], intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, kilS, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH5, lomR, stfR, tfaR, pinR, ynaE, ynaM |
|
| RA | 1,490,095 | G→A | intergenic (+424/‑807) | aldA → / → cybB | aldehyde dehydrogenase A/superoxide oxidase |
| RA | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| RA | 1,629,247 | C→T | I11I (ATC→ATT) | ydfZ → | putative selenoprotein YdfZ |
| RA | 1,632,513 | C→T | intergenic (‑228/‑377) | ydfJ ← / → ynfT | putative transporter YdfJ/protein YnfT |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| JC JC | 1,655,874 | IS2 (+) +5 bp | coding (67‑71/342 nt) | ynfB → | DUF1283 domain‑containing protein YnfB |
| RA | 1,660,102 | C→T | N678N (AAC→AAT) | ynfE → | putative selenate reductase YnfE |
| RA | 1,667,460 | G→A | Q369* (CAG→TAG) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| JC JC | 1,743,496 | IS5 (–) +4 bp | coding (40‑43/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| JC JC | 1,871,057 | IS1 (+) +9 bp | coding (673‑681/1476 nt) | cdgI → | putative c‑di‑GMP binding protein CdgI |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,173,448 | C→T | intergenic (‑575/+834) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,204,395 | T→A | intergenic (+106/‑201) | yehK → / → yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| JC JC | 2,238,267 | IS1 (+) +9 bp | coding (1015‑1023/1521 nt) | mglA ← | D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit |
| JC JC | 2,320,770 | IS2 (+) +5 bp | coding (728‑732/1827 nt) | atoS → | sensor histidine kinase AtoS |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,577,937 | T→C | E147E (GAA→GAG) | maeB ← | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+)) |
| RA | 2,578,358 | +A | coding (20/2280 nt) | maeB ← | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+)) |
| RA | 2,582,272 | C→T | G169E (GGG→GAG) | ypfG ← | DUF1176 domain‑containing protein YpfG |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,600,978 | C→T | intergenic (+30/‑223) | bcp → / → hyfA | thiol peroxidase/hydrogenase 4 component A |
| RA | 2,613,763 | G→A | E622K (GAA→AAA) | hyfR → | DNA‑binding transcriptional activator HyfR |
| RA | 2,623,838 | G→A | Q265Q (CAG→CAA) | ppk → | polyphosphate kinase |
| RA | 2,632,711 | G→A | R454C (CGT→TGT) | guaB ← | inosine 5'‑monophosphate dehydrogenase |
| RA | 2,823,537 | A→G | L78P (CTG→CCG) | recA ← | DNA recombination/repair protein RecA |
| RA | 2,838,241 | G→A | intergenic (‑136/+13) | hydN ← / ← ascG | putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG |
| RA | 2,897,126 | T→C | T249A (ACG→GCG) | ygcS ← | putative transporter YgcS |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,923,941 | C→T | R58Q (CGA→CAA) | yqcC ← | DUF446 domain‑containing protein YqcC |
| RA | 2,924,310 | C→T | noncoding (215/369 nt) | csrB ← | small regulatory RNA CsrB |
| RA | 2,931,805 | C→T | R251W (CGG→TGG) | ygdG → | flap endonuclease |
| RA | 2,937,524 | C→T | I19I (ATC→ATT) | fucK → | L‑fuculokinase |
| RA | 2,951,111 | C→T | V451M (GTG→ATG) | recD ← | exodeoxyribonuclease V subunit RecD |
| RA | 2,955,316 | C→T | D230N (GAT→AAT) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,962,925 | C→T | D78N (GAT→AAT) | ygdB ← | DUF2509 domain‑containing protein YgdB |
| RA | 2,965,617 | C→T | A141T (GCC→ACC) | lgt ← | phosphatidylglycerol‑‑prolipoprotein diacylglyceryl transferase |
| RA | 3,025,601 | (T)5→4 | coding (1251/1401 nt) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,070,858 | T→G | K129N (AAA→AAC) | fbaA ← | fructose‑bisphosphate aldolase class II |
| RA | 3,096,754 | G→A | G25D (GGT→GAT) | rdgB → | dITP/XTP pyrophosphatase |
| MC JC | 3,131,341 | Δ128 bp | IS5‑mediated | yghQ ← | putative transport protein YghQ |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,256,301 | G→A | S117S (TCC→TCT) | cyuA ← | putative L‑cysteine desulfidase CyuA |
| RA | 3,279,276 | C→G | F121L (TTC→TTG) | kbaZ → | putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone |
| RA | 3,296,481 | G→A | V25M (GTG→ATG) | dolP → | division and outer membrane stress‑associated lipid‑binding lipoprotein |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,364,664 | G→A | G620R (GGA→AGA) | yhcD → | putative fimbrial usher protein YhcD |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,433,665 | C→T | intergenic (‑105/‑25) | smf ← / → def | protein Smf/peptide deformylase |
| RA | 3,433,900 | C→T | L71L (CTA→TTA) | def → | peptide deformylase |
| RA | 3,474,425 | T→G | K43T (AAA→ACA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,481,131 | G→A | L11L (CTG→TTG) | kefG ← | glutathione‑regulated potassium‑efflux system ancillary protein KefG |
| RA | 3,486,502 | C→T | T128I (ACT→ATT) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,500,129 | G→A | G74S (GGC→AGC) | frlA → | fructoselysine/psicoselysine transporter |
| RA | 3,511,466 | C→T | V293V (GTG→GTA) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,517,171 | G→A | L46F (CTT→TTT) | damX ← | cell division protein DamX |
| RA | 3,555,047 | 2 bp→TG | coding (1963‑1964/2706 nt) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,362 | G→A | intergenic (+496/+260) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,591,074 | G→A | L418L (CTG→TTG) | ugpB ← | sn‑glycerol 3‑phosphate ABC transporter periplasmic binding protein |
| RA | 3,630,221 | C→T | E128K (GAA→AAA) | yhiI ← | putative membrane fusion protein YhiI |
| RA | 3,646,970 | G→T | Q224H (CAG→CAT) | gor → | glutathione reductase (NADPH) |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,647,949 | C→T | intergenic (‑161/‑114) | dinQ ← / → agrA | membrane toxin DinQ/small RNA AgrA |
| RA | 3,664,594 | G→A | L9F (CTC→TTC) | gadW ← | DNA‑binding transcriptional dual regulator GadW |
| RA | 3,665,576 | C→T | V79I (GTT→ATT) | gadX ← | DNA‑binding transcriptional dual regulator GadX |
| RA | 3,707,883 | G→A | intergenic (‑178/+733) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,729,440 | 2 bp→TT | noncoding (105‑106/160 nt) | xylZ ← | small RNA XylZ |
| RA | 3,730,560 | C→T | W69* (TGG→TAG) | xylA ← | xylose isomerase |
| RA | 3,770,539 | C→T | V281M (GTG→ATG) | yibH ← | inner membrane protein YibH |
| RA | 3,773,173 | Δ1 bp | coding (893/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,773,176 | C→T | S299F (TCT→TTT) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,834,564 | G→A | Q456* (CAA→TAA) | yicJ ← | putative xyloside transporter YicJ |
| RA | 3,926,991 | G→A | L5L (CTG→TTG) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,931,779 | T→C | F155S (TTT→TCT) | kup → | K(+):H(+) symporter Kup |
| JC JC | 3,938,724 | IS2 (+) +5 bp | coding (498‑502/993 nt) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| RA | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| RA | 3,967,770 | C→T | intergenic (+94/‑146) | rho → / → rfe | transcription termination factor Rho/UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| RA | 4,133,252 | C→T | P213S (CCG→TCG) | metF → | 5,10‑methylenetetrahydrofolate reductase |
| JC JC | 4,147,156 | IS2 (–) +5 bp | coding (19‑23/342 nt) | frwD → | putative PTS enzyme IIB component FrwD |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,215,670 | G→T | D65Y (GAT→TAT) | aceB → | malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,238,232 | C→T | P200L (CCT→CTT) | yjbH → | putative lipoprotein YjbH |
| RA | 4,272,711 | C→T | E387E (GAG→GAA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,275,204 | C→T | intergenic (‑163/‑267) | yjcB ← / → pdeC | uncharacterized protein YjcB/c‑di‑GMP phosphodiesterase PdeC |
| RA | 4,276,212 | C→T | P248S (CCC→TCC) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| RA | 4,276,422 | C→T | P318S (CCG→TCG) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| RA | 4,281,093 | G→A | A372T (GCG→ACG) | yjcE → | putative transporter YjcE |
| RA | 4,283,043 | G→A | F11F (TTC→TTT) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,283,465 | G→A | P480S (CCG→TCG) | actP ← | acetate/glycolate:cation symporter |
| RA | 4,284,646 | G→A | A86V (GCC→GTC) | actP ← | acetate/glycolate:cation symporter |
| RA | 4,285,238 | G→A | intergenic (‑25/+175) | yjcH ← / ← acs | DUF485 domain‑containing inner membrane protein YjcH/acetyl‑CoA synthetase (AMP‑forming) |
| RA | 4,288,385 | G→A | V208I (GTT→ATT) | nrfA → | cytochrome c552 nitrite reductase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,428 | G→A | intergenic (+634/+8) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,297,782 | G→A | P529S (CCT→TCT) | fdhF ← | formate dehydrogenase H |
| RA | 4,298,401 | G→A | L322L (CTC→CTT) | fdhF ← | formate dehydrogenase H |
| RA | 4,306,035 | C→T | G188D (GGC→GAC) | yjcS ← | linear primary‑alkylsulfatase |
| RA | 4,306,960 | G→A | A280A (GCC→GCT) | alsK ← | D‑allose kinase |
| RA | 4,307,151 | G→A | P217S (CCT→TCT) | alsK ← | D‑allose kinase |
| RA | 4,318,215 | G→A | L184L (CTG→TTG) | phnK ← | carbon‑phosphorus lyase subunit PhnK |
| RA | 4,320,007 | G→A | H219H (CAC→CAT) | phnI ← | carbon‑phosphorus lyase core complex subunit PhnI |
| RA | 4,320,344 | G→A | A107V (GCC→GTC) | phnI ← | carbon‑phosphorus lyase core complex subunit PhnI |
| RA | 4,320,416 | G→A | T83I (ACC→ATC) | phnI ← | carbon‑phosphorus lyase core complex subunit PhnI |
| RA | 4,320,543 | G→A | L41F (CTT→TTT) | phnI ← | carbon‑phosphorus lyase core complex subunit PhnI |
| RA | 4,321,488 | G→A | A70V (GCC→GTC) | phnG ← | carbon‑phosphorus lyase core complex subunit PhnG |
| RA | 4,321,603 | T→C | I32V (ATC→GTC) | phnG ← | carbon‑phosphorus lyase core complex subunit PhnG |
| RA | 4,322,786 | G→A | intergenic (‑364/+550) | phnF ← / ← phnD | putative transcriptional regulator PhnF/phosphonate/phosphate ABC transporter periplasmic binding protein |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,328,622 | T→C | D496D (GAT→GAC) | rdcA → | regulator of diguanylate cyclase RdcA |
| RA | 4,331,890 | C→T | L463L (CTC→CTT) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,340,953 | C→T | G226R (GGG→AGG) | melR ← | DNA‑binding transcriptional dual regulator MelR |
| RA | 4,344,501 | G→A | G378D (GGC→GAC) | melB → | melibiose:H(+)/Na(+)/Li(+) symporter |
| RA | 4,344,935 | G→A | T208T (ACC→ACT) | yjdF ← | DUF2238 domain‑containing inner membrane protein YjdF |
| RA | 4,390,331 | C→T | Q10Q (CAG→CAA) | psd ← | phosphatidylserine decarboxylase proenzyme |
| RA | 4,402,938 | G→A | A301T (GCT→ACT) | hflK → | regulator of FtsH protease |
| RA | 4,410,859 | C→T | L103F (CTC→TTC) | yjfJ → | PspA family protein YjfJ |
| RA | 4,414,192 | G→A | intergenic (+1/‑83) | yjfC → / → aidB | putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB |
| RA | 4,430,584 | C→T | P241S (CCA→TCA) | cycA → | D‑serine/alanine/glycine/:H(+)symporter |
| RA | 4,431,220 | C→T | L453L (CTG→TTG) | cycA → | D‑serine/alanine/glycine/:H(+)symporter |
| RA | 4,437,890 | C→T | Q62* (CAG→TAG) | ytfI → | protein YtfI |
| RA | 4,439,578 | G→A | intergenic (‑316/‑9) | ytfJ ← / → ytfK | PF09695 family protein YtfJ/stringent response modulator YtfK |
| RA | 4,440,768 | G→A | L150L (CTG→TTG) | paeA ← | putative cadaverine/putrescine exporter |
| RA | 4,445,315 | C→T | P402S (CCC→TCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,445,924 | C→T | Q605* (CAG→TAG) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,446,482 | C→T | L791L (CTG→TTG) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,448,304 | C→T | intergenic (+69/‑143) | ytfP → / → chpS | gamma‑glutamylamine cyclotransferase family protein YtfP/ChpS antitoxin of the ChpB‑ChpS toxin‑antitoxin system |
| RA | 4,463,952 | G→A | S253F (TCC→TTC) | treC ← | trehalose‑6‑phosphate hydrolase |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,476,605 | G→A | S390N (AGC→AAC) | yjgL → | protein YjgL |
| RA | 4,489,016 | C→T | E350K (GAA→AAA) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,492,470 | C→A | G19V (GGC→GTC) | idnT ← | L‑idonate/5‑ketogluconate/gluconate transporter |
| RA | 4,492,583 | (G)6→7 | intergenic (‑58/+4) | idnT ← / ← idnO | L‑idonate/5‑ketogluconate/gluconate transporter/5‑keto‑D‑gluconate 5‑reductase |
| RA | 4,495,194 | A→T | F339Y (TTT→TAT) | ahr ← | NADPH‑dependent aldehyde reductase Ahr |
| RA | 4,496,168 | G→T | G14G (GGC→GGA) | ahr ← | NADPH‑dependent aldehyde reductase Ahr |
| RA | 4,496,885 | G→A | intergenic (+396/‑1387) | leuX → / → insC6 | tRNA‑Leu/IS2 insertion element repressor InsA |
| MC JC | 4,498,182 | Δ1,336 bp | IS2‑mediated | insC6–insD6 | insC6, insD6 |
| RA | 4,507,424 | G→C | pseudogene (228/255 nt) | insO → | IS911B regulator fragment |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,512,293 | T→C | H41R (CAC→CGC) | fecD ← | ferric citrate ABC transporter membrane subunit FecD |
| RA | 4,512,501 | C→T | A303A (GCG→GCA) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| RA | 4,512,642 | T→C | V256V (GTA→GTG) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| RA | 4,513,044 | T→C | S122S (TCA→TCG) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| RA | 4,513,841 | A→G | R156R (CGT→CGC) | fecB ← | ferric citrate ABC transporter periplasmic binding protein |
| RA | 4,514,139 | A→C | I57S (ATC→AGC) | fecB ← | ferric citrate ABC transporter periplasmic binding protein |
| RA | 4,514,287 | G→C | L8V (CTT→GTT) | fecB ← | ferric citrate ABC transporter periplasmic binding protein |
| RA | 4,514,983 | A→C | V565V (GTT→GTG) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,515,348 | A→C | L444V (TTG→GTG) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,516,110 | C→T | A190T (GCC→ACC) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,516,378 | G→A | N100N (AAC→AAT) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,516,632 | T→C | T16A (ACC→GCC) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,516,959 | C→T | P253P (CCG→CCA) | fecR ← | ferric citrate regulator FecR |
| RA | 4,517,127 | C→A | V197V (GTG→GTT) | fecR ← | ferric citrate regulator FecR |
| RA | 4,518,627 | C→A | P34H (CCT→CAT) | insA7 → | IS1 family repressor protein InsA |
| RA | 4,518,681 | A→C | K52T (AAG→ACG) | insA7 → | IS1 family repressor protein InsA |
| RA | 4,518,793 | C→T | R89R (CGC→CGT) | insA7 → | IS1 family repressor protein InsA |
| RA | 4,530,252 | C→A | intergenic (‑9/+3) | sgcC ← / ← sgcB | putative PTS enzyme IIC component SgcC/putative PTS enzyme IIB component SgcB |
| RA | 4,532,063 | C→T | intergenic (‑412/+374) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,535,073 | A→G | intergenic (‑1020/‑1524) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,535,189 | C→T | intergenic (‑1136/‑1408) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,540,111 | A→G | intergenic (‑610/‑846) | nanC ← / → fimB | N‑acetylneuraminate outer membrane channel/Type 1 fimbriae regulatory protein FimB |
| RA | 4,540,114 | A→T | intergenic (‑613/‑843) | nanC ← / → fimB | N‑acetylneuraminate outer membrane channel/Type 1 fimbriae regulatory protein FimB |
| RA | 4,540,431 | T→C | intergenic (‑930/‑526) | nanC ← / → fimB | N‑acetylneuraminate outer membrane channel/Type 1 fimbriae regulatory protein FimB |
| JC JC | 4,541,425 | IS1 (–) +8 bp | coding (469‑476/603 nt) | fimB → | Type 1 fimbriae regulatory protein FimB |
| RA | 4,542,683 | Δ1 bp | intergenic (+50/‑432) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,542,692 | +A | intergenic (+59/‑423) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,543,047 | T→G | intergenic (+414/‑68) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,544,464 | A→T | E54V (GAG→GTG) | fimC → | type 1 fimbriae periplasmic chaperone |
| RA | 4,546,272 | A→C | T393P (ACC→CCC) | fimD → | type I fimbriae usher protein |
| RA | 4,549,223 | T→G | V139G (GTG→GGG) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| RA | 4,553,609 | T→A | L237I (TTA→ATA) | uxuB → | D‑mannonate oxidoreductase |
| RA | 4,556,917 | A→G | E2G (GAA→GGA) | idlP → | iraD leader peptide |
| RA | 4,560,309 | T→A | P124P (CCA→CCT) | yjiH ← | uncharacterized protein YjiH |
| RA | 4,563,567 | T→C | I13V (ATT→GTT) | yjiK ← | PF06977 family protein YjiK |
| RA | 4,564,141 | T→G | A183A (GCA→GCC) | yjiL ← | putative ATPase, activator of (R)‑hydroxyglutaryl‑CoA dehdratase |
| RA | 4,567,272 | C→A | intergenic (‑26/+15) | yjiN ← / ← mdtM | DUF445 domain‑containing protein YjiN/multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 4,569,307 | T→C | intergenic (‑580/+855) | ytiE ← / ← yjiR | protein YtiE/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR |
| RA | 4,591,674 | A→G | K6K (AAA→AAG) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,591,677 | T→C | I7I (ATT→ATC) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,591,930 | G→C | E92Q (GAG→CAG) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,591,974 | G→A | A106A (GCG→GCA) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,592,082 | G→A | L142L (CTG→CTA) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,592,188 | C→T | H178Y (CAT→TAT) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,595,570 | (A)6→5 | coding (282/915 nt) | lgoR ← | putative DNA‑binding transcriptional regulator LgoR |
| RA | 4,602,089 | C→T | V3V (GTG→GTA) *257* (TGA→TAA) |
yjjB ← yjjP ← |
putative succinate exporter YjjB putative succinate exporter YjjP |
| RA | 4,605,702 | A→C | intergenic (‑39/‑102) | fhuF ← / → yjjZ | ferric‑siderophore reductase FhuF/DUF1435 domain‑containing protein YjjZ |
| RA | 4,605,791 | A→G | intergenic (‑128/‑13) | fhuF ← / → yjjZ | ferric‑siderophore reductase FhuF/DUF1435 domain‑containing protein YjjZ |
| RA | 4,614,170 | C→T | F230F (TTC→TTT) | yjjV → | putative metal‑dependent hydrolase YjjV |
| RA | 4,616,022 | T→C | V348V (GTA→GTG) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| RA | 4,616,073 | T→C | E331E (GAA→GAG) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| RA | 4,616,514 | T→G | S184S (TCA→TCC) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| RA | 4,616,535 | A→G | D177D (GAT→GAC) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| RA | 4,616,648 | C→T | V140I (GTT→ATT) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| RA | 4,616,682 | C→T | P128P (CCG→CCA) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| RA | 4,617,053 | G→C | H5D (CAT→GAT) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| RA | 4,617,138 | C→A | intergenic (‑73/‑185) | yjjI ← / → deoC | DUF3029 domain‑containing protein YjjI/deoxyribose‑phosphate aldolase |
| RA | 4,617,238 | G→A | intergenic (‑173/‑85) | yjjI ← / → deoC | DUF3029 domain‑containing protein YjjI/deoxyribose‑phosphate aldolase |
| RA | 4,617,409 | G→A | V29V (GTG→GTA) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,412 | C→T | I30I (ATC→ATT) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,415 | C→T | A31A (GCC→GCT) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,436 | T→C | T38T (ACT→ACC) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,499 | T→A | T59T (ACT→ACA) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,532 | C→T | I70I (ATC→ATT) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,565 | C→T | D81D (GAC→GAT) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,574 | C→A | D84E (GAC→GAA) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,616 | T→C | A98A (GCT→GCC) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,631 | T→G | V103V (GTT→GTG) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,928 | G→A | P202P (CCG→CCA) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,617,976 | T→C | I218I (ATT→ATC) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,618,030 | C→T | G236G (GGC→GGT) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,618,055 | C→T | L245L (CTG→TTG) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,618,069 | T→C | G249G (GGT→GGC) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,618,075 | C→T | G251G (GGC→GGT) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,618,276 | G→A | A16A (GCG→GCA) | deoA → | thymidine phosphorylase |
| RA | 4,618,312 | T→C | G28G (GGT→GGC) | deoA → | thymidine phosphorylase |
| RA | 4,618,483 | C→T | H85H (CAC→CAT) | deoA → | thymidine phosphorylase |
| RA | 4,618,489 | C→T | T87T (ACC→ACT) | deoA → | thymidine phosphorylase |
| RA | 4,618,702 | T→C | S158S (AGT→AGC) | deoA → | thymidine phosphorylase |
| RA | 4,618,717 | T→G | A163A (GCT→GCG) | deoA → | thymidine phosphorylase |
| RA | 4,618,804 | T→G | L192L (CTT→CTG) | deoA → | thymidine phosphorylase |
| RA | 4,619,026 | A→G | E266E (GAA→GAG) | deoA → | thymidine phosphorylase |
| RA | 4,619,080 | G→T | L284L (CTG→CTT) | deoA → | thymidine phosphorylase |
| RA | 4,619,131 | G→A | Q301Q (CAG→CAA) | deoA → | thymidine phosphorylase |
| RA | 4,619,134 | G→A | A302A (GCG→GCA) | deoA → | thymidine phosphorylase |
| RA | 4,619,197 | G→A | P323P (CCG→CCA) | deoA → | thymidine phosphorylase |
| RA | 4,619,335 | A→T | G369G (GGA→GGT) | deoA → | thymidine phosphorylase |
| RA | 4,619,338 | C→T | R370R (CGC→CGT) | deoA → | thymidine phosphorylase |
| RA | 4,619,359 | C→T | I377I (ATC→ATT) | deoA → | thymidine phosphorylase |
| RA | 4,619,393 | C→T | L389L (CTG→TTG) | deoA → | thymidine phosphorylase |
| RA | 4,619,454 | A→G | N409S (AAC→AGC) | deoA → | thymidine phosphorylase |
| RA | 4,619,917 | T→C | I105I (ATT→ATC) | deoB → | phosphopentomutase |
| RA | 4,620,067 | A→G | Q155Q (CAA→CAG) | deoB → | phosphopentomutase |
| RA | 4,620,145 | T→C | H181H (CAT→CAC) | deoB → | phosphopentomutase |
| RA | 4,620,150 | A→G | E183G (GAA→GGA) | deoB → | phosphopentomutase |
| RA | 4,620,154 | T→C | T184T (ACT→ACC) | deoB → | phosphopentomutase |
| RA | 4,620,157 | C→T | F185F (TTC→TTT) | deoB → | phosphopentomutase |
| RA | 4,620,160 | T→C | G186G (GGT→GGC) | deoB → | phosphopentomutase |
| RA | 4,620,223 | T→C | N207N (AAT→AAC) | deoB → | phosphopentomutase |
| RA | 4,620,256 | C→T | G218G (GGC→GGT) | deoB → | phosphopentomutase |
| RA | 4,620,358 | C→T | G252G (GGC→GGT) | deoB → | phosphopentomutase |
| RA | 4,620,385 | G→A | A261A (GCG→GCA) | deoB → | phosphopentomutase |
| RA | 4,620,415 | A→G | K271K (AAA→AAG) | deoB → | phosphopentomutase |
| RA | 4,620,427 | G→A | A275A (GCG→GCA) | deoB → | phosphopentomutase |
| RA | 4,620,559 | C→T | A319A (GCC→GCT) | deoB → | phosphopentomutase |
| RA | 4,620,571 | A→G | E323E (GAA→GAG) | deoB → | phosphopentomutase |
| RA | 4,620,637 | C→T | T345T (ACC→ACT) | deoB → | phosphopentomutase |
| RA | 4,620,652 | C→T | C350C (TGC→TGT) | deoB → | phosphopentomutase |
| RA | 4,620,706 | A→T | V368V (GTA→GTT) | deoB → | phosphopentomutase |
| RA | 4,620,709 | T→C | Y369Y (TAT→TAC) | deoB → | phosphopentomutase |
| RA | 4,620,742 | T→C | H380H (CAT→CAC) | deoB → | phosphopentomutase |
| JC JC | 4,620,749 | IS1 (+) +9 bp | coding (1147‑1155/1224 nt) | deoB → | phosphopentomutase |
| RA | 4,620,763 | C→T | I387I (ATC→ATT) | deoB → | phosphopentomutase |
| RA | 4,620,766 | C→T | G388G (GGC→GGT) | deoB → | phosphopentomutase |
| MC JC | 4,620,828 | 43 bp→66 bp | intergenic (+2/‑13) | deoB → / → deoD | phosphopentomutase/purine nucleoside phosphorylase |
| RA | 4,621,236 | C→T | R118R (CGC→CGT) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,278 | C→T | F132F (TTC→TTT) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,296 | A→G | A138A (GCA→GCG) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,302 | T→C | D140D (GAT→GAC) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,305 | A→G | A141A (GCA→GCG) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,321 | A→G | I147V (ATT→GTT) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,410 | T→C | I176I (ATT→ATC) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,458 | A→G | E192E (GAA→GAG) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,491 | A→G | V203V (GTA→GTG) | deoD → | purine nucleoside phosphorylase |
| RA | 4,621,542 | T→C | T220T (ACT→ACC) | deoD → | purine nucleoside phosphorylase |
| RA | 4,623,230 | T→C | G296G (GGA→GGG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,336 | G→C | T261S (ACC→AGC) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,404 | G→A | R238R (CGC→CGT) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,448 | T→C | N224D (AAC→GAC) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,470 | C→T | V216V (GTG→GTA) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,473 | G→A | R215R (CGC→CGT) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,502 | C→T | E206K (GAG→AAG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,544 | A→G | L192L (TTG→CTG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,575 | T→C | V181V (GTA→GTG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,578 | C→T | S180S (TCG→TCA) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,581 | C→G | T179T (ACG→ACC) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,641 | G→A | L159L (CTC→CTT) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,656 | T→C | L154L (CTA→CTG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,680 | G→A | R146R (CGC→CGT) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,707 | G→T | G137G (GGC→GGA) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,732 | A→G | V129A (GTC→GCC) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,758 | T→C | G120G (GGA→GGG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,782 | G→A | L112L (CTC→CTT) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,821 | A→G | T99T (ACT→ACC) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,911 | C→T | A69A (GCG→GCA) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,623,983 | T→C | V45V (GTA→GTG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,624,037 | T→C | Q27Q (CAA→CAG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,624,055 | T→C | E21E (GAA→GAG) | lplA ← | lipoate‑‑protein ligase A |
| RA | 4,624,226 | G→A | R188R (CGC→CGT) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,262 | A→G | G176G (GGT→GGC) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,277 | G→A | L171L (CTC→CTT) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,355 | T→C | T145T (ACA→ACG) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,388 | A→C | G134G (GGT→GGG) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,391 | C→G | A133A (GCG→GCC) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,400 | C→T | E130E (GAG→GAA) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,430 | T→C | A120A (GCA→GCG) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,487 | T→G | A101A (GCA→GCC) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,517 | A→G | G91G (GGT→GGC) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,586 | T→C | S68S (TCA→TCG) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,622 | C→T | V56V (GTG→GTA) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,624,670 | C→T | Q40Q (CAG→CAA) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,625,044 | A→G | Q50Q (CAA→CAG) | serB → | phosphoserine phosphatase |
| RA | 4,625,158 | A→G | T88T (ACA→ACG) | serB → | phosphoserine phosphatase |
| RA | 4,625,170 | C→T | H92H (CAC→CAT) | serB → | phosphoserine phosphatase |
| RA | 4,625,179 | G→A | Q95Q (CAG→CAA) | serB → | phosphoserine phosphatase |
| RA | 4,625,242 | T→C | D116D (GAT→GAC) | serB → | phosphoserine phosphatase |
| RA | 4,625,248 | C→T | D118D (GAC→GAT) | serB → | phosphoserine phosphatase |
| RA | 4,625,377 | T→C | R161R (CGT→CGC) | serB → | phosphoserine phosphatase |
| RA | 4,625,533 | C→T | Y213Y (TAC→TAT) | serB → | phosphoserine phosphatase |
| RA | 4,625,546 | C→T | L218L (CTG→TTG) | serB → | phosphoserine phosphatase |
| RA | 4,626,042 | T→C | M44T (ATG→ACG) | radA → | DNA recombination protein |
| RA | 4,626,245 | C→T | L112M (CTA→TTG) | radA → | DNA recombination protein |
| RA | 4,626,247 | A→G | L112M (CTA→TTG) | radA → | DNA recombination protein |
| RA | 4,626,391 | A→G | E160E (GAA→GAG) | radA → | DNA recombination protein |
| RA | 4,626,487 | T→C | G192G (GGT→GGC) | radA → | DNA recombination protein |
| RA | 4,626,521 | T→C | L204L (TTG→CTG) | radA → | DNA recombination protein |
| RA | 4,626,526 | A→G | T205T (ACA→ACG) | radA → | DNA recombination protein |
| RA | 4,626,565 | G→T | V218V (GTG→GTT) | radA → | DNA recombination protein |
| RA | 4,626,568 | G→A | G219G (GGG→GGA) | radA → | DNA recombination protein |
| RA | 4,626,586 | T→C | G225G (GGT→GGC) | radA → | DNA recombination protein |
| RA | 4,626,595 | T→G | A228A (GCT→GCG) | radA → | DNA recombination protein |
| RA | 4,626,601 | G→T | P230P (CCG→CCT) | radA → | DNA recombination protein |
| RA | 4,626,670 | C→T | T253T (ACC→ACT) | radA → | DNA recombination protein |
| RA | 4,626,673 | G→A | L254L (TTG→TTA) | radA → | DNA recombination protein |
| RA | 4,626,784 | C→A | G291G (GGC→GGA) | radA → | DNA recombination protein |
| RA | 4,626,802 | T→C | G297G (GGT→GGC) | radA → | DNA recombination protein |
| RA | 4,626,808 | A→C | S299S (TCA→TCC) | radA → | DNA recombination protein |
| RA | 4,626,820 | A→G | V303V (GTA→GTG) | radA → | DNA recombination protein |
| RA | 4,626,838 | 2 bp→GT | coding (927‑928/1383 nt) | radA → | DNA recombination protein |
| RA | 4,626,886 | C→T | N325N (AAC→AAT) | radA → | DNA recombination protein |
| RA | 4,626,889 | A→G | P326P (CCA→CCG) | radA → | DNA recombination protein |
| RA | 4,626,943 | G→C | V344V (GTG→GTC) | radA → | DNA recombination protein |
| RA | 4,627,027 | T→C | S372S (AGT→AGC) | radA → | DNA recombination protein |
| RA | 4,627,069 | C→T | R386R (CGC→CGT) | radA → | DNA recombination protein |
| RA | 4,627,084 | G→A | P391P (CCG→CCA) | radA → | DNA recombination protein |
| RA | 4,627,159 | C→T | I416I (ATC→ATT) | radA → | DNA recombination protein |
| RA | 4,627,162 | T→A | S417S (TCT→TCA) | radA → | DNA recombination protein |
| RA | 4,627,213 | G→A | V434V (GTG→GTA) | radA → | DNA recombination protein |
| RA | 4,627,299 | 2 bp→GA | intergenic (+5/‑15) | radA → / → nadR | DNA recombination protein/DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,377 | A→G | V21V (GTA→GTG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,509 | G→C | T65T (ACG→ACC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,512 | C→T | I66I (ATC→ATT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,518 | C→G | V68V (GTC→GTG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,539 | A→G | P75P (CCA→CCG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,593 | G→A | E93E (GAG→GAA) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,626 | T→C | R104R (CGT→CGC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,629 | C→T | D105D (GAC→GAT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,641 | C→T | F109F (TTC→TTT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,650 | T→C | S112S (AGT→AGC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,653 | C→T | A113A (GCC→GCT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,668 | G→C | P118P (CCG→CCC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,689 | T→C | R125R (CGT→CGC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,698 | G→A | L128L (TTG→TTA) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,818 | A→G | K168K (AAA→AAG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,824 | C→T | I170I (ATC→ATT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,833 | T→C | D173D (GAT→GAC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,893 | G→T | E193D (GAG→GAT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,627,986 | C→G | T224T (ACC→ACG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,001 | T→C | F229F (TTT→TTC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,007 | G→A | V231V (GTG→GTA) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,028 | C→T | G238G (GGC→GGT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,082 | C→T | N256N (AAC→AAT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,106 | C→T | G264G (GGC→GGT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,160 | T→C | S282S (TCT→TCC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,163 | C→T | D283D (GAC→GAT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,190 | T→A | A292A (GCT→GCA) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,208 | G→A | A298A (GCG→GCA) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,232 | A→G | A306A (GCA→GCG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,238 | C→T | I308I (ATC→ATT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,241 | T→C | D309D (GAT→GAC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,244 | C→T | T310T (ACC→ACT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,256 | C→T | T314T (ACC→ACT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,259 | T→C | T315T (ACT→ACC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,289 | G→T | R325R (CGG→CGT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,292 | A→G | E326E (GAA→GAG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,304 | G→A | V330V (GTG→GTA) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,311 | C→T | L333L (CTG→TTG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,442 | C→G | L376L (CTC→CTG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,463 | T→C | F383F (TTT→TTC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,481 | A→C | E389D (GAA→GAC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,487 | C→T | Y391Y (TAC→TAT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,493 | T→C | S393S (AGT→AGC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,514 | A→G | E400E (GAA→GAG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,628,551 | T→C | intergenic (+4/+304) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,560 | T→G | intergenic (+13/+295) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,583 | G→A | intergenic (+36/+272) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,592 | (T)7→6 | intergenic (+45/+263) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,668 | C→T | intergenic (+121/+187) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,678 | A→C | intergenic (+131/+177) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,683 | G→A | intergenic (+136/+172) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,699 | A→G | intergenic (+152/+156) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,707 | C→A | intergenic (+160/+148) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,710 | T→C | intergenic (+163/+145) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,721 | C→T | intergenic (+174/+134) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,778 | 2 bp→GG | intergenic (+231/+76) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,782 | T→A | intergenic (+235/+73) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,785 | T→C | intergenic (+238/+70) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,802 | G→T | intergenic (+255/+53) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,805 | G→T | intergenic (+258/+50) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,807 | T→G | intergenic (+260/+48) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,831 | G→A | intergenic (+284/+24) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| RA | 4,628,897 | C→T | A542A (GCG→GCA) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,628,939 | G→A | T528T (ACC→ACT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,628,984 | A→G | D513D (GAT→GAC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,628,990 | A→G | I511I (ATT→ATC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,188 | G→A | L445L (CTC→CTT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,281 | G→A | I414I (ATC→ATT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,356 | C→T | A389A (GCG→GCA) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,377 | C→T | L382L (TTG→TTA) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,446 | A→G | G359G (GGT→GGC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,473 | C→T | A350A (GCG→GCA) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,476 | T→C | G349G (GGA→GGG) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,515 | A→G | R336R (CGT→CGC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,521 | G→A | G334G (GGC→GGT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,524 | A→G | Y333Y (TAT→TAC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,635 | T→C | E296E (GAA→GAG) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,647 | C→T | A292A (GCG→GCA) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,674 | A→G | R283R (CGT→CGC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,686 | A→T | G279G (GGT→GGA) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,689 | T→C | Q278Q (CAA→CAG) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,701 | T→C | E274E (GAA→GAG) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,716 | A→G | I269I (ATT→ATC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,797 | A→G | G242G (GGT→GGC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,887 | A→C | V212V (GTT→GTG) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,629,896 | T→C | E209E (GAA→GAG) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,630,022 | T→C | E167E (GAA→GAG) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,630,106 | A→G | N139N (AAT→AAC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,630,238 | T→A | S95S (TCA→TCT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,630,304 | A→G | Y73Y (TAT→TAC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,630,385 | G→A | S46S (TCC→TCT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,630,400 | A→G | N41N (AAT→AAC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,630,553 | A→G | intergenic (‑31/‑180) | ettA ← / → slt | energy‑dependent translational throttle protein EttA/soluble lytic murein transglycosylase |
| RA | 4,630,602 | 2 bp→TT | intergenic (‑80/‑130) | ettA ← / → slt | energy‑dependent translational throttle protein EttA/soluble lytic murein transglycosylase |
| RA | 4,630,615 | C→T | intergenic (‑93/‑118) | ettA ← / → slt | energy‑dependent translational throttle protein EttA/soluble lytic murein transglycosylase |
| RA | 4,630,837 | T→C | S35S (AGT→AGC) | slt → | soluble lytic murein transglycosylase |
| RA | 4,630,912 | G→A | K60K (AAG→AAA) | slt → | soluble lytic murein transglycosylase |
| RA | 4,630,921 | G→A | P63P (CCG→CCA) | slt → | soluble lytic murein transglycosylase |
| RA | 4,630,945 | C→T | R71R (CGC→CGT) | slt → | soluble lytic murein transglycosylase |
| RA | 4,630,960 | T→C | D76D (GAT→GAC) | slt → | soluble lytic murein transglycosylase |
| RA | 4,630,984 | G→T | T84T (ACG→ACT) | slt → | soluble lytic murein transglycosylase |
| RA | 4,631,146 | G→A | A138A (GCG→GCA) | slt → | soluble lytic murein transglycosylase |
| RA | 4,631,245 | C→T | S171S (AGC→AGT) | slt → | soluble lytic murein transglycosylase |
| RA | 4,631,323 | A→T | T197T (ACA→ACT) | slt → | soluble lytic murein transglycosylase |
| RA | 4,634,882 | C→T | Q143Q (CAG→CAA) | rob ← | DNA‑binding transcriptional dual regulator Rob |
| RA | 4,635,658 | T→C | D46D (GAT→GAC) | creA → | PF05981 family protein CreA |
| RA | 4,635,706 | C→A | T62T (ACC→ACA) | creA → | PF05981 family protein CreA |
| RA | 4,635,757 | C→T | A79A (GCC→GCT) | creA → | PF05981 family protein CreA |
| RA | 4,635,889 | T→C | D123D (GAT→GAC) | creA → | PF05981 family protein CreA |
| RA | 4,636,139 | A→C | K45Q (AAG→CAG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,146 | 2 bp→CT | coding (140‑141/690 nt) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,175 | C→T | L57L (CTG→TTG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,180 | G→T | P58P (CCG→CCT) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,186 | T→C | I60I (ATT→ATC) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,201 | G→A | L65L (TTG→TTA) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,309 | C→T | Y101Y (TAC→TAT) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,385 | A→T | T127S (ACG→TCG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,411 | A→T | G135G (GGA→GGT) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,466 | G→A | A154T (GCG→ACG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,474 | T→G | T156T (ACT→ACG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,493 | T→C | L163L (TTG→CTG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,513 | A→G | S169S (TCA→TCG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,516 | G→A | P170P (CCG→CCA) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,543 | G→A | L179L (CTG→CTA) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,555 | A→G | V183V (GTA→GTG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,591 | C→T | V195V (GTC→GTT) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,610 | C→T | L202L (CTG→TTG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,717 | T→C | L8L (TTG→CTG) | creC → | sensory histidine kinase CreC |
| RA | 4,636,749 | A→G | A18A (GCA→GCG) | creC → | sensory histidine kinase CreC |
| RA | 4,636,767 | C→T | A24A (GCC→GCT) | creC → | sensory histidine kinase CreC |
| RA | 4,636,821 | G→A | L42L (TTG→TTA) | creC → | sensory histidine kinase CreC |
| RA | 4,636,827 | C→T | D44D (GAC→GAT) | creC → | sensory histidine kinase CreC |
| RA | 4,636,993 | G→T | A100S (GCG→TCG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,001 | C→T | G102G (GGC→GGT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,037 | A→G | G114G (GGA→GGG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,133 | T→G | S146S (TCT→TCG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,151 | A→G | A152A (GCA→GCG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,269 | T→C | L192L (TTG→CTG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,322 | T→C | S209S (TCT→TCC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,346 | T→C | A217A (GCT→GCC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,379 | C→T | L228L (CTC→CTT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,382 | C→T | P229P (CCC→CCT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,385 | T→A | D230E (GAT→GAA) | creC → | sensory histidine kinase CreC |
| RA | 4,637,391 | T→C | G232G (GGT→GGC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,409 | A→G | K238K (AAA→AAG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,412 | C→T | L239L (CTC→CTT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,478 | C→T | Y261Y (TAC→TAT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,481 | A→G | A262A (GCA→GCG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,487 | T→C | T264T (ACT→ACC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,523 | A→C | G276G (GGA→GGC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,553 | G→A | P286P (CCG→CCA) | creC → | sensory histidine kinase CreC |
| RA | 4,637,577 | T→C | T294T (ACT→ACC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,675 | C→T | A327V (GCT→GTT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,697 | C→T | F334F (TTC→TTT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,742 | A→C | K349N (AAA→AAC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,751 | G→A | L352L (CTG→CTA) | creC → | sensory histidine kinase CreC |
| RA | 4,637,759 | C→T | T355M (ACG→ATG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,766 | C→T | T357T (ACC→ACT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,775 | C→T | N360N (AAC→AAT) | creC → | sensory histidine kinase CreC |
| RA | 4,637,814 | A→G | G373G (GGA→GGG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,857 | T→C | C388R (TGC→CGC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,862 | C→A | I389I (ATC→ATA) | creC → | sensory histidine kinase CreC |
| RA | 4,637,896 | A→G | T401A (ACG→GCC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,898 | G→C | T401A (ACG→GCC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,943 | T→G | L416L (CTT→CTG) | creC → | sensory histidine kinase CreC |
| RA | 4,637,976 | T→G | P427P (CCT→CCG) | creC → | sensory histidine kinase CreC |
| RA | 4,638,142 | T→C | intergenic (+22/‑36) | creC → / → creD | sensory histidine kinase CreC/putative inner membrane protein CreD |
| RA | 4,638,210 | T→C | T11T (ACT→ACC) | creD → | putative inner membrane protein CreD |
| RA | 4,638,212 | G→C | S12T (AGC→ACC) | creD → | putative inner membrane protein CreD |
| RA | 4,638,214 | C→T | L13L (CTG→TTG) | creD → | putative inner membrane protein CreD |
| RA | 4,638,264 | G→A | Q29Q (CAG→CAA) | creD → | putative inner membrane protein CreD |
| RA | 4,638,282 | T→C | A35A (GCT→GCC) | creD → | putative inner membrane protein CreD |
| RA | 4,638,354 | C→T | L59L (CTC→CTT) | creD → | putative inner membrane protein CreD |
| RA | 4,638,532 | T→C | L119L (TTA→CTA) | creD → | putative inner membrane protein CreD |
| RA | 4,638,567 | A→G | E130E (GAA→GAG) | creD → | putative inner membrane protein CreD |
| RA | 4,638,587 | C→T | T137I (ACC→ATC) | creD → | putative inner membrane protein CreD |
| RA | 4,638,600 | A→C | P141P (CCA→CCC) | creD → | putative inner membrane protein CreD |
| RA | 4,638,735 | T→C | P186P (CCT→CCC) | creD → | putative inner membrane protein CreD |
| RA | 4,638,818 | G→C | G214A (GGC→GCC) | creD → | putative inner membrane protein CreD |
| RA | 4,638,883 | C→T | L236M (CTA→TTG) | creD → | putative inner membrane protein CreD |
| RA | 4,638,885 | A→G | L236M (CTA→TTG) | creD → | putative inner membrane protein CreD |
| RA | 4,638,927 | C→A | H250Q (CAC→CAA) | creD → | putative inner membrane protein CreD |
| RA | 4,639,005 | G→C | P276P (CCG→CCC) | creD → | putative inner membrane protein CreD |
| RA | 4,639,023 | A→G | V282V (GTA→GTG) | creD → | putative inner membrane protein CreD |
| RA | 4,639,053 | T→G | T292T (ACT→ACG) | creD → | putative inner membrane protein CreD |
| RA | 4,639,217 | C→T | T347I (ACC→ATC) | creD → | putative inner membrane protein CreD |
| RA | 4,639,261 | A→T | I362L (ATA→TTA) | creD → | putative inner membrane protein CreD |
| RA | 4,639,284 | A→G | Q369Q (CAA→CAG) | creD → | putative inner membrane protein CreD |
| RA | 4,639,299 | T→C | G374G (GGT→GGC) | creD → | putative inner membrane protein CreD |
| RA | 4,639,303 | T→C | C376R (TGC→CGC) | creD → | putative inner membrane protein CreD |
| RA | 4,639,440 | C→T | T421T (ACC→ACT) | creD → | putative inner membrane protein CreD |
| RA | 4,639,502 | C→T | T442M (ACG→ATG) | creD → | putative inner membrane protein CreD |
| RA | 4,639,510 | G→C | E445Q (GAG→CAA) | creD → | putative inner membrane protein CreD |
| RA | 4,639,512 | G→A | E445Q (GAG→CAA) | creD → | putative inner membrane protein CreD |
| RA | 4,639,608 | G→A | C233C (TGC→TGT) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| RA | 4,639,632 | A→G | I225I (ATT→ATC) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| RA | 4,639,719 | C→T | P196P (CCG→CCA) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| RA | 4,639,764 | G→A | S181S (TCC→TCT) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| RA | 4,639,956 | T→C | L117L (CTA→CTG) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| RA | 4,640,785 | C→T | intergenic (+14/‑157) | ytjE → / → yjtD | protein YtjE/putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,640,864 | A→G | intergenic (+93/‑78) | ytjE → / → yjtD | protein YtjE/putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,640,908 | G→T | intergenic (+137/‑34) | ytjE → / → yjtD | protein YtjE/putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,640,924 | A→G | intergenic (+153/‑18) | ytjE → / → yjtD | protein YtjE/putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,022 | G→T | G27G (GGG→GGT) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,031 | T→A | D30E (GAT→GAA) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,131 | T→C | L64L (TTG→CTG) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,208 | C→T | A89A (GCC→GCT) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,217 | T→A | V92V (GTT→GTA) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,226 | G→A | V95V (GTG→GTA) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,296 | T→C | L119L (TTG→CTG) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,352 | G→A | A137A (GCG→GCA) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,382 | G→A | A147A (GCG→GCA) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,428 | G→A | A163T (GCG→ACG) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,439 | 2 bp→CA | coding (498‑499/687 nt) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,483 | C→T | A181V (GCC→GTC) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,488 | A→G | T183A (ACA→GCA) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| RA | 4,641,544 | A→G | Q201Q (CAA→CAG) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423806–3424233 | 3424486–3424239 | 7–681 | 40 [38] | [37] 40 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3762352–3764074 | 3765128–3764078 | 5–2777 | 39 [36] | [38] 39 | rhsA | rhs element protein RhsA |
| * | * | ÷ | NC_000913 | 4035338–4035731 | 4036918–4035736 | 6–1581 | 39 [38] | [37] 42 | [rrsA] | [rrsA] |
| * | * | ÷ | NC_000913 | 4507459 | 4508753 | 1295 | 115 [0] | [36] 39 | insI3 | insI3 |
| * | * | ÷ | NC_000913 | 4519240 | 4525971 | 6732 | 106 [0] | [0] 122 | yjhU–yjhI | yjhU,yjhF,yjhG,yjhH,yjhI |
| * | * | ÷ | NC_000913 | 4569765 | 4591648 | 21884 | 122 [0] | [38] 40 | yjiR–btsT | yjiR,yjiS,yjiT,mcrC,mcrB,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT |
| * | * | ÷ | NC_000913 | 4621586 | 4623208 | 1623 | 40 [38] | [27] 39 | [deoD]–[lplA] | [deoD],yjjJ,[lplA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 273955 = | NA (NA) | 87 (0.780) | 71/598 | 0.2 | NA | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 575789 | NA (NA) | pseudogene (1037/1040 nt) | nmpC | putative outer membrane porin NmpC | |||||
| * | ? | NC_000913 | 1207790 = | 40 (0.360) | 50 (0.480) | 41/566 | 1.5 | 51.6% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 56 (0.530) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 48 (0.430) | 37 (0.350) | 29/566 | 2.8 | 42.2% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 56 (0.530) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 122 (1.100) | 83/598 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4569764 | 0 (0.000) | intergenic (‑1037/+398) | ytiE/yjiR | protein YtiE/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR | |||||
| * | ? | NC_000913 | 2170171 = | NA (NA) | 75 (0.880) +70 bp |
45/458 | 0.6 | NA | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 4519239 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 2578477 = | 92 (0.830) | 33 (0.300) | 31/596 | 2.8 | 26.4% | intergenic (‑100/‑189) | maeB/talA | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+))/transaldolase A |
| ? | NC_000913 | 2996361 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 122 (1.100) | 87/598 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4525972 = | 0 (0.000) | intergenic (‑169/+134) | yjhI/sgcR | putative DNA‑binding transcriptional regulator YjhI/putative DNA‑binding transcriptional regulator SgcR | |||||
| * | ? | NC_000913 | = 4507458 | NA (NA) | 56 (0.830) +118 bp |
37/362 | 0.5 | NA | noncoding (334/334 nt) | IS911 | repeat region |
| ? | NC_000913 | 4509007 = | NA (NA) | noncoding (1/795 nt) | IS911 | repeat region | |||||