mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 109,960 | G→A | R561H (CGT→CAT) | secA → | protein translocation ATPase |
| RA | 113,438 | C→T | intergenic (+150/‑6) | yacM → / → guaC | protein YacM/GMP reductase |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 334,188 | G→A | I82I (ATC→ATT) | yahB ← | putative LysR‑type DNA‑binding transcriptional regulator YahB |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,979 | G→A | V71M (GTG→ATG) | yahH → | putative uncharacterized protein YahH |
| RA | 339,986 | G→A | R73Q (CGA→CAA) | yahH → | putative uncharacterized protein YahH |
| JC JC | 362,107 | IS5 (+) +4 bp | coding (1070‑1073/1254 nt) | lacY ← | lactose permease |
| RA | 466,169 | T→A | T382S (ACC→TCC) | ybaE ← | uncharacterized protein YbaE |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| JC JC | 480,735 | IS5 (+) +4 bp | intergenic (‑27/+516) | tomB ← / ← acrB | Hha toxicity modulator TomB/multidrug efflux pump RND permease AcrB |
| RA | 631,618 | Δ1 bp | coding (1725/2106 nt) | cstA → | pyruvate transporter CstA |
| MC JC | 678,921 | Δ8,930 bp | IS5‑mediated | [ybeT]–gltI | [ybeT], ybeU, djlC, hscC, rihA, gltL, gltK, gltJ, sroC, gltI |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| JC JC | 792,077 | IS2 (+) +5 bp | intergenic (‑22/+235) | galE ← / ← modF | UDP‑glucose 4‑epimerase/ABC family protein ModF |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,325 | A→G | K401K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,352 | C→A | D410E (GAC→GAA) | icd → | isocitrate dehydrogenase |
| JC JC | 1,217,464 | IS2 (–) +5 bp | coding (137‑141/1524 nt) | pdeG → | putative c‑di‑GMP phosphodiesterase PdeG |
| RA | 1,290,644 | G→T | E135* (GAA→TAA) | rssB → | regulator of RpoS |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,381,704 | A→C | intergenic (+897/‑243) | ycjU → / → ompG | beta‑phosphoglucomutase/outer membrane porin G |
| RA | 1,383,033 | A→T | L310* (TTA→TAA) | ycjW ← | DNA‑binding transcriptional repressor YcjW |
| JC JC | 1,435,353 | IS2 (+) +5 bp | coding (263‑267/435 nt) | uspF ← | universal stress protein F |
| RA | 1,449,061 | T→G | intergenic (+43/+15) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/copper‑containing amine oxidase |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| JC JC | 1,656,167 | IS2 (–) +5 bp | intergenic (+18/‑13) | ynfB → / → speG | DUF1283 domain‑containing protein YnfB/spermidine N‑acetyltransferase |
| JC JC | 1,671,703 | IS2 (–) +5 bp | intergenic (+19/‑70) | asr → / → ydgU | periplasmic chaperone Asr/uncharacterized protein YdgU |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| JC JC | 1,743,490 | IS5 (+) +4 bp | coding (34‑37/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,856,968 | T→A | I268F (ATT→TTT) | ydjI ← | L‑glycero‑L‑galacto‑octuluronate‑1‑phosphate aldolase |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,096,437 | Δ1 bp | coding (594/777 nt) | hisF → | imidazole glycerol phosphate synthase subunit HisF |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,239,760 | C→T | E197K (GAA→AAA) | mglB ← | D‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| JC JC | 2,452,057 | IS2 (–) +5 bp | coding (276‑280/753 nt) | yfcS ← | putative fimbrial chaperone YfcS |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| JC JC | 2,788,791 | IS5 (–) +4 bp | intergenic (‑2954/‑191) | ileY ← / → glaH | tRNA‑Ile/glutarate dioxygenase GlaH |
| MC JC | 2,867,280 | Δ8 bp | coding (265‑272/993 nt) | rpoS ← | RNA polymerase sigma factor RpoS |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,101,039 | (C)7→8 | coding (585/720 nt) | yggN ← | DUF2884 domain‑containing protein YggN |
| RA | 3,263,231 | T→A | T144S (ACC→TCC) | tdcD ← | propionate kinase |
| RA | 3,308,048 | G→A | Q293* (CAG→TAG) | nlpI ← | lipoprotein NlpI |
| RA | 3,316,428 | C→T | E367K (GAA→AAA) | nusA ← | transcription termination/antitermination protein NusA |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| JC JC | 3,367,057 | IS2 (–) +5 bp | coding (132‑136/717 nt) | yhcF → | DUF1120 domain‑containing protein YhcF |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| JC JC | 3,437,349 | IS30 (–) +2 bp | coding (832‑833/1377 nt) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,474,425 | T→G | K43T (AAA→ACA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,475,993 | T→C | T150A (ACC→GCC) | yheO ← | DNA‑binding transcriptional regulator YheO |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,566,550 | G→A | T11M (ACG→ATG) | glgP ← | glycogen phosphorylase |
| RA | 3,629,921 | C→T | E228K (GAG→AAG) | yhiI ← | putative membrane fusion protein YhiI |
| JC JC | 3,638,509 | IS5 (–) +4 bp | coding (868‑871/1500 nt) | pitA → | metal phosphate:H(+) symporter PitA |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,761,230 | G→A | S7F (TCC→TTC) | selA ← | selenocysteine synthase |
| JC JC | 3,766,086 | IS5 (+) +4 bp | coding (3904‑3907/4134 nt) | rhsA → | rhs element protein RhsA |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| JC JC | 3,828,674 | IS2 (–) +5 bp | intergenic (‑9/‑267) | gltS ← / → xanP | glutamate:sodium symporter/xanthine:H(+) symporter XanP |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,912,074 | G→A | S532F (TCC→TTC) | glmS ← | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| MC JC | 3,933,612 | Δ174 bp | [rbsD]–[rbsA] | [rbsD], [rbsA] | |
| JC JC | 3,939,119 | IS2 (+) +5 bp | coding (893‑897/993 nt) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| RA | 3,967,066 | C→T | T217I (ACC→ATC) | rho → | transcription termination factor Rho |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,031,457 | C→T | F99F (TTC→TTT) | pepQ → | Xaa‑Pro dipeptidase |
| RA | 4,031,511 | C→T | S117S (AGC→AGT) | pepQ → | Xaa‑Pro dipeptidase |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,254,787 | G→A | P560P (CCC→CCT) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,254,790 | C→T | V559V (GTG→GTA) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,254,865 | T→C | A534A (GCA→GCG) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,254,871 | T→A | L532L (CTA→CTT) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,015 | A→T | P484P (CCT→CCA) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,021 | A→G | H482H (CAT→CAC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,198 | A→G | Y423Y (TAT→TAC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,270 | A→G | T399T (ACT→ACC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,297 | A→G | R390R (CGT→CGC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,366 | C→A | R367R (CGG→CGT) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,402 | C→A | T355T (ACG→ACT) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,450 | A→C | P339P (CCT→CCG) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,459 | A→G | N336N (AAT→AAC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,474 | G→A | A331A (GCC→GCT) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,543 | A→G | S308S (AGT→AGC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,606 | A→G | A287A (GCT→GCC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,636 | T→G | R277R (CGA→CGC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,717 | T→C | A250A (GCA→GCG) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,839 | A→G | L210L (TTG→CTG) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,849 | T→C | V206V (GTA→GTG) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,852 | G→A | A205A (GCC→GCT) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,255,906 | A→T | A187A (GCT→GCA) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,256,002 | A→G | A155A (GCT→GCC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,264,742 | C→T | A143A (GCC→GCT) | dnaB → | replicative DNA helicase |
| RA | 4,264,748 | T→C | A145A (GCT→GCC) | dnaB → | replicative DNA helicase |
| RA | 4,264,790 | T→C | D159D (GAT→GAC) | dnaB → | replicative DNA helicase |
| RA | 4,264,793 | G→T | L160L (CTG→CTT) | dnaB → | replicative DNA helicase |
| RA | 4,264,832 | G→A | A173A (GCG→GCA) | dnaB → | replicative DNA helicase |
| RA | 4,264,931 | G→A | G206G (GGG→GGA) | dnaB → | replicative DNA helicase |
| RA | 4,265,078 | G→A | P255P (CCG→CCA) | dnaB → | replicative DNA helicase |
| RA | 4,265,105 | A→T | P264P (CCA→CCT) | dnaB → | replicative DNA helicase |
| RA | 4,265,117 | C→T | I268I (ATC→ATT) | dnaB → | replicative DNA helicase |
| RA | 4,265,186 | C→T | D291D (GAC→GAT) | dnaB → | replicative DNA helicase |
| RA | 4,266,360 | G→A | A193A (GCG→GCA) | alr → | alanine racemase 1 |
| RA | 4,266,534 | G→A | E251E (GAG→GAA) | alr → | alanine racemase 1 |
| RA | 4,267,333 | T→A | C74S (TGC→AGC) | tyrB → | tyrosine aminotransferase |
| RA | 4,269,615 | T→G | F68V (TTT→GTT) | aphA → | acid phosphatase/phosphotransferase |
| RA | 4,271,744 | G→A | P710S (CCT→TCT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,271,781 | T→C | P697P (CCA→CCG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,271,823 | A→G | D683D (GAT→GAC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,271,838 | C→T | G678G (GGG→GGA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,271,862 | T→C | P670P (CCA→CCG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,271,955 | G→T | T639T (ACC→ACA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,271,976 | C→G | V632V (GTG→GTC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,271,979 | C→T | P631P (CCG→CCA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,000 | C→T | K624K (AAG→AAA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,009 | G→A | N621N (AAC→AAT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,012 | G→A | G620G (GGC→GGT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,090 | G→A | G594G (GGC→GGT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,105 | C→T | G589G (GGG→GGA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,111 | C→T | L587L (TTG→TTA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,135 | C→T | A579A (GCG→GCA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,144 | C→T | P576P (CCG→CCA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,153 | T→C | A573A (GCA→GCG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,222 | T→C | A550A (GCA→GCG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,306 | A→G | R522R (CGT→CGC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,327 | C→T | P515P (CCG→CCA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,396 | T→G | A492A (GCA→GCC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,408 | A→G | S488S (TCT→TCC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,473 | G→A | L467L (CTG→TTG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,495 | G→A | I459I (ATC→ATT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,504 | T→C | A456A (GCA→GCG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,564 | A→G | I436I (ATT→ATC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,582 | A→G | A430A (GCT→GCC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,585 | A→G | P429P (CCT→CCC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,639 | C→T | G411G (GGG→GGA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,657 | C→T | P405P (CCG→CCA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,660 | A→G | R404R (CGT→CGC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,666 | A→G | S402S (AGT→AGC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,690 | G→A | R394R (CGC→CGT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,699 | G→A | S391S (AGC→AGT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,708 | C→T | T388T (ACG→ACA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,720 | G→A | R384R (CGC→CGT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,735 | A→G | H379H (CAT→CAC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,765 | A→G | I369I (ATT→ATC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,857 | G→A | L339L (CTG→TTG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,903 | C→T | S323S (TCG→TCA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,963 | A→T | A303A (GCT→GCA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,993 | T→G | R293R (CGA→CGC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,272,996 | A→G | D292D (GAT→GAC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,086 | T→C | E262E (GAA→GAG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,089 | A→G | R261R (CGT→CGC) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,101 | G→A | G257G (GGC→GGT) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,197 | C→T | L225L (CTG→CTA) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,212 | T→C | S220S (TCA→TCG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,221 | A→C | L217L (CTT→CTG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,302 | T→C | P190P (CCA→CCG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,273,539 | T→C | L111L (TTA→TTG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,274,110 | (T)7→8 | intergenic (‑239/‑15) | uvrA ← / → ssb | UvrABC excision nuclease subunit A/ssDNA‑binding protein |
| RA | 4,274,277 | A→G | E51E (GAA→GAG) | ssb → | ssDNA‑binding protein |
| RA | 4,274,328 | G→C | A68A (GCG→GCC) | ssb → | ssDNA‑binding protein |
| RA | 4,274,499 | C→T | G125G (GGC→GGT) | ssb → | ssDNA‑binding protein |
| RA | 4,274,653 | C→T | P177S (CCG→TCG) | ssb → | ssDNA‑binding protein |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,424,009 | C→A | Q104K (CAG→AAG) | ulaF → | L‑ribulose‑5‑phosphate 4‑epimerase UlaF |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,499,661 | T→C | intergenic (+161/‑1599) | insD6 → / → yjgZ | IS2 insertion element protein InsB/uncharacterized protein YjgZ |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,518,627 | 2 bp→AC | coding (101‑102/276 nt) | insA7 → | IS1 family repressor protein InsA |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196375 | 1211479 | 15105 | 11 [0] | [10] 11 | C0293–mcrA | C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 68 [0] | [0] 73 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3134043 | 3136514 | 2472 | 82 [0] | [0] 96 | yghT–pitB | yghT,pitB |
| * | * | ÷ | NC_000913 | 3423925–3424231 | 3424437–3424239 | 9–513 | 12 [10] | [10] 11 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 3708467 | 3708562 | 96 | 36 [0] | [8] 12 | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| * | * | ÷ | NC_000913 | 4035421–4035733 | 4036872–4035735 | 3–1452 | 11 [10] | [10] 12 | [rrsA] | [rrsA] |
| * | * | ÷ | NC_000913 | 4640415 | 4640417 | 3 | 87 [0] | [0] 109 | yjjY | uncharacterized protein YjjY |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 68 (0.970) | 45/590 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | = 1469241 | NA (NA) | 80 (1.170) +GTACGTAA |
59/574 | 0.1 | NA | intergenic (‑92/‑5) | insC2/ydbA | IS2 insertion element repressor InsA/putative outer membrane protein, N‑terminal fragment |
| ? | NC_000913 | 1469295 = | NA (NA) | pseudogene (50/50 nt) | ydbA | putative outer membrane protein, N‑terminal fragment | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 73 (1.040) | 52/590 | 0.2 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 82 (1.170) | 62/590 | 0.1 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3134042 | 0 (0.000) | intergenic (‑85/‑89) | yghS/yghT | putative ATP‑binding protein YghS/putative ATP‑binding protein YghT | |||||
| * | ? | NC_000913 | = 3131340 | NA (NA) | 96 (1.370) | 62/590 | 0.1 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3136515 = | 0 (0.000) | intergenic (‑144/+148) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
| * | ? | NC_000913 | = 3708466 | 0 (0.000) | 36 (0.810) | 22/374 | 0.6 | 100% | intergenic (‑761/+150) | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| ? | NC_000913 | 3708635 = | 0 (0.000) | noncoding (58/77 nt) | proK | tRNA‑Pro | |||||
| * | ? | NC_000913 | 4498180 = | NA (NA) | 33 (0.470) | 25/590 | 1.1 | NA | intergenic (+1691/‑92) | leuX/insC6 | tRNA‑Leu/IS2 insertion element repressor InsA |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4499511 | NA (NA) | 87 (1.240) | 58/590 | 0.1 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4640414 | 0 (0.000) | coding (13/141 nt) | yjjY | uncharacterized protein YjjY | |||||
| * | ? | NC_000913 | 4507459 = | NA (NA) | 108 (1.550) | 68/588 | 0.0 | 100% | noncoding (1221/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 4640418 = | 0 (0.000) | coding (17/141 nt) | yjjY | uncharacterized protein YjjY | |||||
| * | ? | NC_000913 | 4542682 = | 114 (1.630) | 26 (0.380) | 25/572 | 1.1 | 22.5% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 69 (1.020) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 119 (1.700) | 32 (0.470) | 26/572 | 1.0 | 25.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 69 (1.020) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||