Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,743,490	IS5 (+) +4 bp	coding (34‑37/1374 nt)	mdtK →	multidrug efflux pump MdtK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1396044 =	NA (NA)	50 (0.710)	36/590	0.6	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	= 1743493	0 (0.000)					coding (37/1374 nt)	mdtK	multidrug efflux pump MdtK
*	?	NC_000913	= 1397238	NA (NA)	39 (0.560)	30/590	0.8	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	1743490 =	0 (0.000)					coding (34/1374 nt)	mdtK	multidrug efflux pump MdtK

ATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1396333‑1396044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTACAGGGCACCGCAAAAC  <  NC_000913/1743493‑1743209                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAG                                                                                                                                                                                                                                                                                     <  2:380120/300‑1    GCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGA                                                                                                                                                                                                                                                                                    >  2:539158/1‑298             GTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACT                                                                                                                                                                                                                                                                         >  1:48310/1‑300                   ATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGGTATA                                                                                                                                                                                                                                                                   >  2:54300/1‑300                   ATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATA                                                                                                                                                                                                                                                                   >  2:496218/1‑300                     GCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTACACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTAATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTAACTGATATACT                                                                                                                                                                                                                                                                 >  2:221392/1‑300                       TGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTNCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTC                                                                                                                                                                                                                                                               >  1:107576/1‑300                       TGCATGCAGGGAGTGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCTGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATGCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTC                                                                                                                                                                                                                                                               <  2:26169/300‑1                           TGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATNCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCA                                                                                                                                                                                                                                                           <  2:395755/300‑1                              AGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCATTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGT                                                                                                                                                                                                                                                        >  1:302387/1‑300                                               GTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTANTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGT                                                                                                                                                                                                                                       >  2:409690/1‑300                                               GTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATANCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGT                                                                                                                                                                                                                                       >  1:397217/1‑300                                                        GGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATAT                                                                                                                                                                                                                               >  2:487261/1‑299                                                        GGATAAGGCCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTNATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATG                                                                                                                                                                                                                              <  2:403117/300‑1                                                          ATAAGGTCGCCGGCCATTACCGGCCTTTGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTTTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCATGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAG                                                                                                                                                                                                                            <  2:299460/300‑1                                                                      GCCATTACCAGCCTTGGGGTAAAACTGCTCGATGACTTCCACCATTTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAACCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATGCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTTTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGC                                                                                                                                                                                                                <  2:135765/300‑1                                                                         ATTACCAGCCTTGGGGNAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACNTTTTATTTGTAGTTATATNAGAGACTAAAAAGCCGC                                                                                                                                                                                                             >  1:470604/1‑300                                                                                   TTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGC                                                                                                                                                                                                   <  2:476416/300‑1                                                                                    TGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCA                                                                                                                                                                                                  <  1:257889/300‑1                                                                                      GGGTAAAACGGCTCGATGACTTCCACCGTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCCCTGTCGGCGACGGTAAGTTGATGACTCATGATGAACCATGTTCTATGGCTACAGATGACAAACATGATCTCATATCAGGAACTTGTTCGCACCTTCCCTAATACCAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGC                                                                                                                                                                                                >  1:481634/1‑300                                                                                      GGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTACAAAGCCGCCTGAATGGGCAGC                                                                                                                                                                                                >  1:481644/1‑300                                                                                      GGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGC                                                                                                                                                                                                >  1:481643/1‑300                                                                                                           TCCACCATGTTTTGCCATGGCAGAATCTGCCCCATGCTGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTGATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAA                                                                                                                                                                            <  2:210666/299‑1                                                                                                                            TGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCG                                                                                                                                                          <  1:29445/300‑1                                                                                                                             GGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAGGAAGCAGGGGAAATTCAGTCTATTGTAGCGA                                                                                                                                                         >  2:123429/1‑300                                                                                                                                  AATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCCCGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGAct                                                                                                                                                    >  2:276666/1‑298                                                                                                                                                     AAGAAAATCTCTTTTCTGGTCTGACTGCGCTTACTGCTGAATTCACTTTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTTTTCTATGGCTCCAGACGACAAACATGATCTCATATCATGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATAGACTTCTGCACGTGAGCATCTTGTATGTGTGGTGATATGAGAGACGAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAggc                                                                                                                                                                                   <  2:79421/250‑4                                                                                                                                                                                 GCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGT                                                                                                     >  1:458243/1‑300                                                                                                                                                                                   TTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAA                                                                                                   >  1:308050/1‑300                                                                                                                                                                                        GCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCCGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAA                                                                                                   >  1:372367/1‑295                                                                                                                                                                                        GCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGC                                                                                               >  1:301437/1‑299                                                                                                                                                                                                           acGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCATGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCCCCTGCTCTTGT                                                                            >  1:429138/3‑299                                                                                                                                                                                                           AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTAAATGGTAAGGGCGTTTTCCACCTGCTATTGT                                                                            >  1:429240/1‑299                                                                                                                                                                                                                  GTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGCCTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGACTGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAAGATTTATTAACTCTCCAGTGAAAAAACAGCCGCTCTTACCCCTTCACTGATAAGGGCGTTTTCAACCCGCCCCTGTGCTGAACA                                                                    >  2:24311/1‑300                                                                                                                                                                                                                                       CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCA                                                >  1:94808/1‑299                                                                                                                                                                                                                                       CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCAATGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCA                                                >  1:190204/1‑299                                                                                                                                                                                                                                                      AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATG                                 <  1:487261/299‑1                                                                                                                                                                                                                                                                     TCTCATATCATGGACTTGTTCGCACCTTCCCGAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGANGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGTGGATTGTAC                 <  2:400650/300‑1                                                                                                                                                                                                                                                                     TCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATTAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTAC                 <  1:221392/300‑1                                                                                                                                                                                                                                                                     TCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGTGGATTGTAC                 <  1:539158/300‑1                                                                                                                                                                                                                                                                     TCTCATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGACTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGCATGTTTACGGGGATTGTAa                 >  2:43423/1‑299                                                                                                                                                                                                                                                                        CATATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGTTGAACAGAATGTCTTAGCTGATTTCAGGAGTTGTAAGTATGTTT                              >  2:194205/1‑284                                                                                                                                                                                                                                                                          TATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTACAGtgc            <  2:481644/300‑4                                                                                                                                                                                                                                                                          TATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTACAGGGC            <  1:496218/300‑1                                                                                                                                                                                                                                                                          TATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTACAGGGC            <  2:481643/300‑1                                                                                                                                                                                                                                                                          TATCAGGGACTTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTNGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTACAGGGC            <  1:409690/300‑1                                                                                                                                                                                                                                                                          TATCAGGGACGTGTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTGCTTTGGAGTTATATTATAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCGCTGGTAAGGGCGTTGTCCACCTGCTATTATGCTGAACAGAATGTATTAACTGATTTCGGGAGGTGTAAGTATGTGTACGGGGATTGTACAGGGC            <  2:481634/300‑1                                                                                                                                                                                                                                                                                    TTGTTCGCACCTTCCCTAATAACGGACGCGGTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTTTATTTATATTAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTACAGGGCACCGCAAAAC  <  2:190204/300‑1                                                                                                                                                                                                                                                                                      GTTCGCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCATGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCGTTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTCTTGTGCTGACCAGAATGTCTTAACTGATTTCAGGAGTTTTAAGTATGTTTACGGGGATTGTACAGGGCACCGCAA     >  2:102437/1‑295                                                                                                                                                                                                                                                                                          GCACCTTCCCTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCATGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCCTTCTTACCCCTTCACTGGTAAGGGCGTTTTCCAACTGATATTGTGCTGAACAGAATGTCTTAAATGATTTCAGGAGT                                           >  2:26761/1‑253                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1396333‑1396044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATAACAGACGCGCTTCACTGATATACTTCTGCACGTGAACACCTTTTATTTGTAGTTATATGAGAGACTAAAAAGCCGCCTGAATGGGCAGCAAAAAGAAGAAGCAGGGGAAATTCAGTCTATTGTAGCGAGGATTTATTAATTCTCCAGTGAAAAAATAGCCATTCTTACCCCTTCACTGGTAAGGGCGTTTTCCACCTGCTATTGTGCTGAACAGAATGTCTTAACTGATTTCAGGAGTTGTAAGTATGTTTACGGGGATTGTACAGGGCACCGCAAAAC  <  NC_000913/1743493‑1743209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.