#=GENOME_DIFF 1.0 #=CREATED 13:04:23 10 Oct 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8324_S5_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8324_S5_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8324_S5_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8324_S5_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8324_S5_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 334493152 #=CONVERTED-READS 1129517 #=INPUT-BASES 334554293 #=INPUT-READS 1129726 #=MAPPED-BASES 323449989 #=MAPPED-READS 1092947 SNP 1 233 NC_000913 109960 A SNP 2 234 NC_000913 113438 T SNP 3 236 NC_000913 246747 T DEL 4 462,476 NC_000913 257908 776 SNP 5 237 NC_000913 284535 G SNP 6 238 NC_000913 313543 A SNP 7 239 NC_000913 334188 A SNP 8 240 NC_000913 339935 T SNP 9 241 NC_000913 339941 T SNP 10 242 NC_000913 339958 A SNP 11 243 NC_000913 339979 A SNP 12 244 NC_000913 339986 A MOB 13 477,479 NC_000913 362107 IS5 1 4 SNP 14 245 NC_000913 466169 A SUB 15 246,247 NC_000913 480295 2 AA MOB 16 478,480 NC_000913 480735 IS5 1 4 DEL 17 248 NC_000913 631618 1 DEL 18 463,484 NC_000913 678921 8930 mediated=IS5 SNP 19 249 NC_000913 690948 A SNP 20 250 NC_000913 700038 A MOB 21 481,483 NC_000913 792077 IS2 1 5 SNP 22 252 NC_000913 968837 A SNP 23 253 NC_000913 1040126 T SNP 24 254 NC_000913 1061935 A SUB 25 256,257 NC_000913 1111727 2 TT SNP 26 258 NC_000913 1169836 G SNP 27 259 NC_000913 1189980 G SNP 28 260 NC_000913 1196220 T SNP 29 261 NC_000913 1196232 T SNP 30 262 NC_000913 1196245 C SNP 31 263 NC_000913 1196247 G SNP 32 264 NC_000913 1196277 T SNP 33 265 NC_000913 1196280 C SNP 34 266 NC_000913 1196283 G SNP 35 267 NC_000913 1196292 T SNP 36 268 NC_000913 1196304 A SNP 37 269 NC_000913 1196316 A SNP 38 270 NC_000913 1196325 G SNP 39 271 NC_000913 1196352 A MOB 40 482,485 NC_000913 1217464 IS2 -1 5 SNP 41 272 NC_000913 1290644 T DEL 42 465,488 NC_000913 1299499 1199 SNP 43 273 NC_000913 1301992 T SNP 44 274 NC_000913 1306736 G SNP 45 275 NC_000913 1310770 G SNP 46 276 NC_000913 1337394 G SNP 47 277 NC_000913 1357202 T SNP 48 278 NC_000913 1358859 C SNP 49 279 NC_000913 1381704 C SNP 50 280 NC_000913 1383033 T MOB 51 492,493 NC_000913 1435353 IS2 1 5 SNP 52 281 NC_000913 1449061 G SNP 53 282 NC_000913 1643679 T SNP 54 283 NC_000913 1652331 C MOB 55 494,495 NC_000913 1656167 IS2 -1 5 MOB 56 496,498 NC_000913 1671703 IS2 -1 5 SNP 57 284 NC_000913 1721136 T MOB 58 489,490 NC_000913 1743490 IS5 1 4 SNP 59 285 NC_000913 1776715 T SNP 60 286 NC_000913 1856968 A SNP 61 287 NC_000913 1894839 C SNP 62 288 NC_000913 1987499 A SNP 63 289 NC_000913 2040433 A DEL 64 290 NC_000913 2096437 1 DEL 65 291,292 NC_000913 2173363 2 SNP 66 293 NC_000913 2188087 C SNP 67 294 NC_000913 2239760 T SNP 68 295 NC_000913 2384808 T SNP 69 296 NC_000913 2410419 A MOB 70 501,509 NC_000913 2452057 IS2 -1 5 SNP 71 298 NC_000913 2484827 T MOB 72 503,505 NC_000913 2788791 IS5 -1 4 DEL 73 467,511 NC_000913 2867280 8 MOB 74 514,515 NC_000913 2913392 IS2 -1 5 SUB 75 301,302 NC_000913 3088010 2 TT INS 76 303 NC_000913 3101039 C repeat_length=1 repeat_new_copies=8 repeat_ref_copies=7 repeat_seq=C SNP 77 304 NC_000913 3263231 A SNP 78 305 NC_000913 3308048 A SNP 79 306 NC_000913 3316428 T SUB 80 307,308 NC_000913 3336411 2 AT MOB 81 517,520 NC_000913 3367057 IS2 -1 5 SNP 82 309 NC_000913 3388041 G SNP 83 310 NC_000913 3436697 A MOB 84 522,523 NC_000913 3437349 IS30 -1 2 SNP 85 311 NC_000913 3474425 G SNP 86 312 NC_000913 3475993 C INS 87 313 NC_000913 3560455 G SNP 88 314 NC_000913 3566550 A SNP 89 317 NC_000913 3629921 T MOB 90 504,507 NC_000913 3638509 IS5 -1 4 SNP 91 318 NC_000913 3682515 T SNP 92 319 NC_000913 3707947 A SNP 93 320 NC_000913 3725176 G SNP 94 322 NC_000913 3761230 A MOB 95 525,526 NC_000913 3766086 IS5 1 4 SNP 96 323 NC_000913 3771979 T INS 97 324 NC_000913 3815883 C INS 98 528 NC_000913 3822651 CAGGAT repeat_length=6 repeat_new_copies=2 repeat_ref_copies=1 repeat_seq=CAGGAT SNP 99 325 NC_000913 3823162 T MOB 100 518,521 NC_000913 3828674 IS2 -1 5 SNP 101 326 NC_000913 3869637 A SNP 102 327 NC_000913 3878536 A SNP 103 329 NC_000913 3912074 A DEL 104 471,529 NC_000913 3933612 174 MOB 105 519,530 NC_000913 3939119 IS2 1 5 SNP 106 330 NC_000913 3967066 T SNP 107 331 NC_000913 3993531 C SNP 108 332 NC_000913 3996049 A SNP 109 333 NC_000913 4011802 T SNP 110 334 NC_000913 4031457 T SNP 111 335 NC_000913 4031511 T SNP 112 336 NC_000913 4084903 G SNP 113 337 NC_000913 4092703 G SNP 114 338 NC_000913 4113851 A SNP 115 339 NC_000913 4143377 T SNP 116 340 NC_000913 4161248 T SNP 117 341 NC_000913 4164123 G SNP 118 342 NC_000913 4215347 A SNP 119 343 NC_000913 4223638 C SNP 120 344 NC_000913 4254787 A SNP 121 345 NC_000913 4254790 T SNP 122 346 NC_000913 4254865 C SNP 123 347 NC_000913 4254871 A SNP 124 348 NC_000913 4255015 T SNP 125 349 NC_000913 4255021 G SNP 126 350 NC_000913 4255198 G SNP 127 351 NC_000913 4255270 G SNP 128 352 NC_000913 4255297 G SNP 129 353 NC_000913 4255366 A SNP 130 354 NC_000913 4255402 A SNP 131 355 NC_000913 4255450 C SNP 132 356 NC_000913 4255459 G SNP 133 357 NC_000913 4255474 A SNP 134 358 NC_000913 4255543 G SNP 135 359 NC_000913 4255606 G SNP 136 360 NC_000913 4255636 G SNP 137 361 NC_000913 4255717 C SNP 138 362 NC_000913 4255839 G SNP 139 363 NC_000913 4255849 C SNP 140 364 NC_000913 4255852 A SNP 141 365 NC_000913 4255906 T SNP 142 366 NC_000913 4256002 G SNP 143 367 NC_000913 4264742 T SNP 144 368 NC_000913 4264748 C SNP 145 369 NC_000913 4264790 C SNP 146 370 NC_000913 4264793 T SNP 147 371 NC_000913 4264832 A SNP 148 372 NC_000913 4264931 A SNP 149 373 NC_000913 4265078 A SNP 150 374 NC_000913 4265105 T SNP 151 375 NC_000913 4265117 T SNP 152 376 NC_000913 4265186 T SNP 153 377 NC_000913 4266360 A SNP 154 378 NC_000913 4266534 A SNP 155 379 NC_000913 4267333 A SNP 156 380 NC_000913 4269615 G SNP 157 381 NC_000913 4271744 A SNP 158 382 NC_000913 4271781 C SNP 159 383 NC_000913 4271823 G SNP 160 384 NC_000913 4271838 T SNP 161 385 NC_000913 4271862 C SNP 162 386 NC_000913 4271955 T SNP 163 387 NC_000913 4271976 G SNP 164 388 NC_000913 4271979 T SNP 165 389 NC_000913 4272000 T SNP 166 390 NC_000913 4272009 A SNP 167 391 NC_000913 4272012 A SNP 168 392 NC_000913 4272090 A SNP 169 393 NC_000913 4272105 T SNP 170 394 NC_000913 4272111 T SNP 171 395 NC_000913 4272135 T SNP 172 396 NC_000913 4272144 T SNP 173 397 NC_000913 4272153 C SNP 174 398 NC_000913 4272222 C SNP 175 399 NC_000913 4272306 G SNP 176 400 NC_000913 4272327 T SNP 177 401 NC_000913 4272396 G SNP 178 402 NC_000913 4272408 G SNP 179 403 NC_000913 4272473 A SNP 180 404 NC_000913 4272495 A SNP 181 405 NC_000913 4272504 C SNP 182 406 NC_000913 4272564 G SNP 183 407 NC_000913 4272582 G SNP 184 408 NC_000913 4272585 G SNP 185 409 NC_000913 4272639 T SNP 186 410 NC_000913 4272657 T SNP 187 411 NC_000913 4272660 G SNP 188 412 NC_000913 4272666 G SNP 189 413 NC_000913 4272690 A SNP 190 414 NC_000913 4272699 A SNP 191 415 NC_000913 4272708 T SNP 192 416 NC_000913 4272720 A SNP 193 417 NC_000913 4272735 G SNP 194 418 NC_000913 4272765 G SNP 195 419 NC_000913 4272857 A SNP 196 420 NC_000913 4272903 T SNP 197 421 NC_000913 4272963 T SNP 198 422 NC_000913 4272993 G SNP 199 423 NC_000913 4272996 G SNP 200 424 NC_000913 4273086 C SNP 201 425 NC_000913 4273089 G SNP 202 426 NC_000913 4273101 A SNP 203 427 NC_000913 4273197 T SNP 204 428 NC_000913 4273212 C SNP 205 429 NC_000913 4273221 C SNP 206 430 NC_000913 4273302 C SNP 207 431 NC_000913 4273539 C INS 208 432 NC_000913 4274110 T repeat_length=1 repeat_new_copies=8 repeat_ref_copies=7 repeat_seq=T SNP 209 433 NC_000913 4274277 G SNP 210 434 NC_000913 4274328 C SNP 211 435 NC_000913 4274499 T SNP 212 436 NC_000913 4274653 T INS 213 437 NC_000913 4282332 A repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=A SUB 214 438,439 NC_000913 4293781 2 AT INS 215 442,443 NC_000913 4296381 GC SNP 216 444 NC_000913 4325644 T SNP 217 446 NC_000913 4392997 A SNP 218 447 NC_000913 4393552 A SNP 219 448 NC_000913 4396373 T SNP 220 449 NC_000913 4396772 C SNP 221 450 NC_000913 4424009 A SNP 222 451 NC_000913 4425688 A SNP 223 452 NC_000913 4425696 A SNP 224 453 NC_000913 4499661 C SNP 225 454 NC_000913 4510238 G SUB 226 455,456 NC_000913 4518627 2 AC SNP 227 457 NC_000913 4532409 G SNP 228 458 NC_000913 4546601 T SNP 229 460 NC_000913 4636925 C SNP 230 461 NC_000913 4638240 A RA 231 . NC_000913 12152 0 G T bias_e_value=44.1327 bias_p_value=9.50797e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=137.3 fisher_strand_p_value=6.21817e-07 frequency=3.263e-01 ks_quality_p_value=1 major_base=G major_cov=30/34 major_frequency=6.737e-01 minor_base=T minor_cov=0/31 new_cov=0/31 polymorphism_frequency=3.263e-01 polymorphism_score=14.1 prediction=polymorphism ref_cov=30/34 total_cov=30/65 RA 232 . NC_000913 58065 0 C A bias_e_value=0.234271 bias_p_value=5.04715e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.8 fisher_strand_p_value=2.42201e-09 frequency=3.710e-01 ks_quality_p_value=1 major_base=C major_cov=10/29 major_frequency=6.290e-01 minor_base=A minor_cov=23/0 new_cov=23/0 polymorphism_frequency=3.710e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=10/29 total_cov=33/29 RA 233 . NC_000913 109960 0 G A consensus_score=214.6 frequency=1 major_base=A major_cov=35/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/32 RA 234 . NC_000913 113438 0 C T consensus_score=353.1 frequency=1 major_base=T major_cov=51/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/52 RA 235 . NC_000913 141849 0 C A bias_e_value=0.0271226 bias_p_value=5.8433e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=170.2 fisher_strand_p_value=2.52982e-10 frequency=2.989e-01 ks_quality_p_value=1 major_base=C major_cov=19/42 major_frequency=7.011e-01 minor_base=A minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.989e-01 polymorphism_score=13.6 prediction=polymorphism ref_cov=19/42 total_cov=45/42 RA 236 . NC_000913 246747 0 G T consensus_score=328.5 frequency=1 major_base=T major_cov=45/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/49 RA 237 . NC_000913 284535 0 T G consensus_score=63.1 frequency=1 major_base=G major_cov=12/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/7 RA 238 . NC_000913 313543 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=274.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/34 major_frequency=9.873e-01 minor_base=G minor_cov=1/0 new_cov=44/34 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=45/34 RA 239 . NC_000913 334188 0 G A bias_e_value=4641650 bias_p_value=0.999999 consensus_score=237.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998436 major_base=A major_cov=42/29 major_frequency=9.861e-01 minor_base=C minor_cov=1/0 new_cov=42/29 polymorphism_frequency=9.861e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=0/0 total_cov=43/29 RA 240 . NC_000913 339935 0 C T consensus_score=51.5 frequency=1 major_base=T major_cov=7/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/14 RA 241 . NC_000913 339941 0 C T consensus_score=50.0 frequency=1 major_base=T major_cov=7/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/14 RA 242 . NC_000913 339958 0 G A consensus_score=53.7 frequency=1 major_base=A major_cov=7/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/15 RA 243 . NC_000913 339979 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=44.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=9/11 major_frequency=8.000e-01 minor_base=G minor_cov=2/3 new_cov=9/11 polymorphism_frequency=8.000e-01 polymorphism_score=4.9 prediction=consensus ref_cov=2/3 total_cov=11/14 RA 244 . NC_000913 339986 0 G A bias_e_value=4218150 bias_p_value=0.90876 consensus_score=46.5 fisher_strand_p_value=0.614625 frequency=1 ks_quality_p_value=0.983471 major_base=A major_cov=9/11 major_frequency=8.333e-01 minor_base=G minor_cov=1/3 new_cov=9/11 polymorphism_frequency=8.333e-01 polymorphism_score=4.2 prediction=consensus ref_cov=1/3 total_cov=10/14 RA 245 . NC_000913 466169 0 T A bias_e_value=4641650 bias_p_value=1 consensus_score=293.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=45/37 major_frequency=9.880e-01 minor_base=G minor_cov=1/0 new_cov=45/37 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/37 RA 246 . NC_000913 480295 0 G A consensus_score=308.9 frequency=1 major_base=A major_cov=42/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/47 RA 247 . NC_000913 480296 0 G A bias_e_value=3835390 bias_p_value=0.826299 consensus_score=300.7 fisher_strand_p_value=0.47191 frequency=1 ks_quality_p_value=1 major_base=A major_cov=41/47 major_frequency=9.888e-01 minor_base=G minor_cov=1/0 new_cov=41/47 polymorphism_frequency=9.888e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=42/47 RA 248 . NC_000913 631618 0 T . consensus_score=220.2 frequency=1 major_base=. major_cov=29/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/16 RA 249 . NC_000913 690948 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=188.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=22/31 major_frequency=9.815e-01 minor_base=G minor_cov=0/1 new_cov=22/31 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=22/32 RA 250 . NC_000913 700038 0 G A consensus_score=161.8 frequency=1 major_base=A major_cov=27/22 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/22 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/22 RA 251 . NC_000913 847955 0 G A bias_e_value=31.8978 bias_p_value=6.87208e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=63.6 fisher_strand_p_value=4.39455e-07 frequency=3.651e-01 ks_quality_p_value=1 major_base=G major_cov=24/16 major_frequency=6.349e-01 minor_base=A minor_cov=0/23 new_cov=0/23 polymorphism_frequency=3.651e-01 polymorphism_score=25.8 prediction=polymorphism ref_cov=24/16 total_cov=24/41 RA 252 . NC_000913 968837 0 G A consensus_score=150.2 frequency=1 major_base=A major_cov=24/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/23 RA 253 . NC_000913 1040126 0 G T consensus_score=190.3 frequency=1 major_base=T major_cov=32/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/18 RA 254 . NC_000913 1061935 0 G A consensus_score=89.9 frequency=1 major_base=A major_cov=18/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/12 RA 255 . NC_000913 1097118 0 C A bias_e_value=3337580 bias_p_value=0.71905 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-4.2 fisher_strand_p_value=0.408097 frequency=4.583e-01 ks_quality_p_value=0.86141 major_base=C major_cov=4/9 major_frequency=5.417e-01 minor_base=A minor_cov=6/5 new_cov=6/5 polymorphism_frequency=4.583e-01 polymorphism_score=25.7 prediction=polymorphism ref_cov=4/9 total_cov=10/14 RA 256 . NC_000913 1111727 0 C T bias_e_value=4641260 bias_p_value=0.999915 consensus_score=163.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.987024 major_base=T major_cov=27/22 major_frequency=9.800e-01 minor_base=C minor_cov=1/0 new_cov=27/22 polymorphism_frequency=9.800e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=1/0 total_cov=28/22 RA 257 . NC_000913 1111728 0 C T bias_e_value=3719040 bias_p_value=0.801231 consensus_score=168.3 fisher_strand_p_value=0.44 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/21 major_frequency=9.800e-01 minor_base=G minor_cov=0/1 new_cov=28/21 polymorphism_frequency=9.800e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/22 RA 258 . NC_000913 1169836 0 A G consensus_score=117.9 frequency=1 major_base=G major_cov=16/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/18 RA 259 . NC_000913 1189980 0 A G bias_e_value=3894020 bias_p_value=0.83893 consensus_score=186.6 fisher_strand_p_value=0.490566 frequency=1 ks_quality_p_value=0.997101 major_base=G major_cov=25/27 major_frequency=9.811e-01 minor_base=A minor_cov=1/0 new_cov=25/27 polymorphism_frequency=9.811e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=1/0 total_cov=26/27 RA 260 . NC_000913 1196220 0 C T consensus_score=74.5 frequency=1 major_base=T major_cov=14/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/17 RA 261 . NC_000913 1196232 0 C T consensus_score=70.5 frequency=1 major_base=T major_cov=13/16 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/16 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/16 RA 262 . NC_000913 1196245 0 T C consensus_score=64.8 frequency=1 major_base=C major_cov=13/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/12 RA 263 . NC_000913 1196247 0 A G consensus_score=60.8 frequency=1 major_base=G major_cov=13/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/12 RA 264 . NC_000913 1196277 0 C T consensus_score=50.2 frequency=1 major_base=T major_cov=13/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/9 RA 265 . NC_000913 1196280 0 G C consensus_score=51.7 frequency=1 major_base=C major_cov=13/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/9 RA 266 . NC_000913 1196283 0 A G consensus_score=53.9 frequency=1 major_base=G major_cov=13/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/9 RA 267 . NC_000913 1196292 0 C T consensus_score=49.7 frequency=1 major_base=T major_cov=13/9 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/9 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/9 RA 268 . NC_000913 1196304 0 G A consensus_score=49.0 frequency=1 major_base=A major_cov=13/8 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/8 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/8 RA 269 . NC_000913 1196316 0 T A consensus_score=45.9 frequency=1 major_base=A major_cov=13/7 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/7 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/7 RA 270 . NC_000913 1196325 0 A G consensus_score=40.0 frequency=1 major_base=G major_cov=13/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/5 RA 271 . NC_000913 1196352 0 C A consensus_score=23.8 frequency=1 major_base=A major_cov=8/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=8/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=8/5 RA 272 . NC_000913 1290644 0 G T consensus_score=156.1 frequency=1 major_base=T major_cov=24/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/23 RA 273 . NC_000913 1301992 0 A T consensus_score=185.4 frequency=1 major_base=T major_cov=28/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/27 RA 274 . NC_000913 1306736 0 T G consensus_score=234.9 frequency=1 major_base=G major_cov=44/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/20 RA 275 . NC_000913 1310770 0 A G consensus_score=228.8 frequency=1 major_base=G major_cov=40/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/21 RA 276 . NC_000913 1337394 0 A G bias_e_value=3805420 bias_p_value=0.819842 consensus_score=146.0 fisher_strand_p_value=0.463415 frequency=1 ks_quality_p_value=1 major_base=G major_cov=22/18 major_frequency=9.756e-01 minor_base=T minor_cov=0/1 new_cov=22/18 polymorphism_frequency=9.756e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/19 RA 277 . NC_000913 1357202 0 C T consensus_score=201.9 frequency=1 major_base=T major_cov=22/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/37 RA 278 . NC_000913 1358859 0 T C consensus_score=136.1 frequency=1 major_base=C major_cov=27/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/13 RA 279 . NC_000913 1381704 0 A C consensus_score=264.3 frequency=1 major_base=C major_cov=26/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/45 RA 280 . NC_000913 1383033 0 A T bias_e_value=3816980 bias_p_value=0.822332 consensus_score=153.6 fisher_strand_p_value=0.466667 frequency=1 ks_quality_p_value=1 major_base=T major_cov=20/24 major_frequency=9.778e-01 minor_base=C minor_cov=1/0 new_cov=20/24 polymorphism_frequency=9.778e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/24 RA 281 . NC_000913 1449061 0 T G consensus_score=136.4 frequency=1 major_base=G major_cov=18/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/20 RA 282 . NC_000913 1643679 0 A T consensus_score=141.5 frequency=1 major_base=T major_cov=15/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/24 RA 283 . NC_000913 1652331 0 T C consensus_score=224.0 frequency=1 major_base=C major_cov=33/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/27 RA 284 . NC_000913 1721136 0 C T consensus_score=208.4 frequency=1 major_base=T major_cov=18/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/45 RA 285 . NC_000913 1776715 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=216.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=27/36 major_frequency=9.844e-01 minor_base=G minor_cov=0/1 new_cov=27/36 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/37 RA 286 . NC_000913 1856968 0 T A consensus_score=260.7 frequency=1 major_base=A major_cov=33/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/42 RA 287 . NC_000913 1894839 0 T C consensus_score=139.9 frequency=1 major_base=C major_cov=15/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/23 RA 288 . NC_000913 1987499 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=141.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=31/16 major_frequency=9.792e-01 minor_base=G minor_cov=1/0 new_cov=31/16 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/16 RA 289 . NC_000913 2040433 0 C A consensus_score=204.2 frequency=1 major_base=A major_cov=36/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/24 RA 290 . NC_000913 2096437 0 A . consensus_score=279.5 frequency=1 major_base=. major_cov=38/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/19 RA 291 . NC_000913 2173363 0 C . consensus_score=224.2 frequency=1 major_base=. major_cov=25/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/21 RA 292 . NC_000913 2173364 0 C . consensus_score=224.2 frequency=1 major_base=. major_cov=25/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/21 RA 293 . NC_000913 2188087 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=291.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999667 major_base=C major_cov=40/37 major_frequency=9.872e-01 minor_base=A minor_cov=1/0 new_cov=40/37 polymorphism_frequency=9.872e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/37 RA 294 . NC_000913 2239760 0 C T consensus_score=226.2 frequency=1 major_base=T major_cov=35/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/29 RA 295 . NC_000913 2384808 0 C T consensus_score=183.6 frequency=1 major_base=T major_cov=28/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/31 RA 296 . NC_000913 2410419 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=192.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=35/20 major_frequency=9.821e-01 minor_base=G minor_cov=1/0 new_cov=35/20 polymorphism_frequency=9.821e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/20 RA 297 . NC_000913 2477265 0 A C bias_e_value=659.92 bias_p_value=0.000142174 consensus_reject=FREQUENCY_CUTOFF consensus_score=83.5 fisher_strand_p_value=1.14896e-05 frequency=2.909e-01 ks_quality_p_value=1 major_base=A major_cov=15/24 major_frequency=7.091e-01 minor_base=C minor_cov=16/0 new_cov=16/0 polymorphism_frequency=2.909e-01 polymorphism_score=14.4 prediction=polymorphism ref_cov=15/24 total_cov=31/24 RA 298 . NC_000913 2484827 0 C T consensus_score=321.9 frequency=1 major_base=T major_cov=47/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/47 RA 299 . NC_000913 2818324 0 G A bias_e_value=4422590 bias_p_value=0.952804 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.6 fisher_strand_p_value=0.70894 frequency=2.000e-01 ks_quality_p_value=1 major_base=G major_cov=17/15 major_frequency=8.000e-01 minor_base=A minor_cov=5/3 new_cov=5/3 polymorphism_frequency=2.000e-01 polymorphism_score=12.8 prediction=polymorphism ref_cov=17/15 total_cov=22/18 RA 300 . NC_000913 3054886 0 G T bias_e_value=0.08371 bias_p_value=1.80345e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=174.0 fisher_strand_p_value=8.22806e-10 frequency=2.414e-01 ks_quality_p_value=1 major_base=G major_cov=18/48 major_frequency=7.586e-01 minor_base=T minor_cov=21/0 new_cov=21/0 polymorphism_frequency=2.414e-01 polymorphism_score=12.3 prediction=polymorphism ref_cov=18/48 total_cov=39/48 RA 301 . NC_000913 3088010 0 C T bias_e_value=2725180 bias_p_value=0.587115 consensus_score=357.3 fisher_strand_p_value=0.243243 frequency=1 ks_quality_p_value=1 major_base=T major_cov=56/53 major_frequency=9.820e-01 minor_base=G minor_cov=0/2 new_cov=56/53 polymorphism_frequency=9.820e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/55 RA 302 . NC_000913 3088011 0 C T consensus_score=371.0 frequency=1 major_base=T major_cov=55/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/55 RA 303 . NC_000913 3101039 1 . C bias_e_value=492904 bias_p_value=0.106191 consensus_score=277.2 fisher_strand_p_value=0.0220586 frequency=1 ks_quality_p_value=1 major_base=C major_cov=27/47 major_frequency=9.487e-01 minor_base=. minor_cov=4/0 new_cov=27/47 polymorphism_frequency=9.487e-01 polymorphism_score=5.3 prediction=consensus ref_cov=4/0 total_cov=31/47 RA 304 . NC_000913 3263231 0 T A consensus_score=201.0 frequency=1 major_base=A major_cov=34/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/25 RA 305 . NC_000913 3308048 0 G A consensus_score=204.9 frequency=1 major_base=A major_cov=22/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/35 RA 306 . NC_000913 3316428 0 C T consensus_score=177.3 frequency=1 major_base=T major_cov=22/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/29 RA 307 . NC_000913 3336411 0 G A consensus_score=308.4 frequency=1 major_base=A major_cov=45/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/43 RA 308 . NC_000913 3336412 0 A T consensus_score=311.1 frequency=1 major_base=T major_cov=45/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/43 RA 309 . NC_000913 3388041 0 T G consensus_score=311.2 frequency=1 major_base=G major_cov=36/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/45 RA 310 . NC_000913 3436697 0 G A consensus_score=205.1 frequency=1 major_base=A major_cov=35/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/25 RA 311 . NC_000913 3474425 0 T G bias_e_value=3713680 bias_p_value=0.800077 consensus_score=181.5 fisher_strand_p_value=0.438596 frequency=1 ks_quality_p_value=1 major_base=G major_cov=32/24 major_frequency=9.825e-01 minor_base=T minor_cov=0/1 new_cov=32/24 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/25 RA 312 . NC_000913 3475993 0 T C consensus_score=425.6 frequency=1 major_base=C major_cov=39/72 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/72 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/72 RA 313 . NC_000913 3560455 1 . G consensus_score=393.4 frequency=1 major_base=G major_cov=54/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/51 RA 314 . NC_000913 3566550 0 G A bias_e_value=3841110 bias_p_value=0.82753 consensus_score=387.5 fisher_strand_p_value=0.480769 frequency=1 ks_quality_p_value=0.984991 major_base=A major_cov=49/54 major_frequency=9.904e-01 minor_base=G minor_cov=1/0 new_cov=49/54 polymorphism_frequency=9.904e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=50/54 RA 315 . NC_000913 3623537 0 G A bias_e_value=0.130658 bias_p_value=2.81491e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=213.3 fisher_strand_p_value=1.31222e-09 frequency=2.295e-01 ks_quality_p_value=1 major_base=G major_cov=56/38 major_frequency=7.705e-01 minor_base=A minor_cov=0/28 new_cov=0/28 polymorphism_frequency=2.295e-01 polymorphism_score=17.7 prediction=polymorphism ref_cov=56/38 total_cov=56/71 RA 316 . NC_000913 3623538 0 G A bias_e_value=1.03199 bias_p_value=2.22333e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=217.9 fisher_strand_p_value=1.1533e-08 frequency=2.051e-01 ks_quality_p_value=1 major_base=G major_cov=56/37 major_frequency=7.949e-01 minor_base=A minor_cov=0/24 new_cov=0/24 polymorphism_frequency=2.051e-01 polymorphism_score=16.5 prediction=polymorphism ref_cov=56/37 total_cov=56/71 RA 317 . NC_000913 3629921 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=250.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=31/41 major_frequency=9.863e-01 minor_base=G minor_cov=0/1 new_cov=31/41 polymorphism_frequency=9.863e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/42 RA 318 . NC_000913 3682515 0 C T consensus_score=420.3 frequency=1 major_base=T major_cov=68/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=68/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/52 RA 319 . NC_000913 3707947 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=500.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=98/51 major_frequency=9.933e-01 minor_base=C minor_cov=1/0 new_cov=98/51 polymorphism_frequency=9.933e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=99/51 RA 320 . NC_000913 3725176 0 T G consensus_score=403.9 frequency=1 major_base=G major_cov=54/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/53 RA 321 . NC_000913 3741871 0 G T bias_e_value=4.60293e-05 bias_p_value=9.91657e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=301.1 fisher_strand_p_value=3.33566e-13 frequency=2.448e-01 ks_quality_p_value=1 major_base=G major_cov=70/38 major_frequency=7.552e-01 minor_base=T minor_cov=0/35 new_cov=0/35 polymorphism_frequency=2.448e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=70/38 total_cov=70/73 RA 322 . NC_000913 3761230 0 G A consensus_score=271.5 frequency=1 major_base=A major_cov=38/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/40 RA 323 . NC_000913 3771979 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=462.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=62/68 major_frequency=9.924e-01 minor_base=G minor_cov=0/1 new_cov=62/68 polymorphism_frequency=9.924e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=63/69 RA 324 . NC_000913 3815883 1 . C bias_e_value=3339340 bias_p_value=0.719429 consensus_score=410.7 fisher_strand_p_value=0.393542 frequency=1 ks_quality_p_value=0.894191 major_base=C major_cov=44/67 major_frequency=9.569e-01 minor_base=. minor_cov=3/2 new_cov=44/67 polymorphism_frequency=9.569e-01 polymorphism_score=13.4 prediction=consensus ref_cov=3/2 total_cov=48/69 RA 325 . NC_000913 3823162 0 C T consensus_score=316.4 frequency=1 major_base=T major_cov=31/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/60 RA 326 . NC_000913 3869637 0 C A consensus_score=257.3 frequency=1 major_base=A major_cov=43/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/35 RA 327 . NC_000913 3878536 0 G A consensus_score=308.2 frequency=1 major_base=A major_cov=30/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/50 RA 328 . NC_000913 3911533 0 C A bias_e_value=8.87607e-07 bias_p_value=1.91226e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.8 fisher_strand_p_value=5.65659e-15 frequency=3.831e-01 ks_quality_p_value=1 major_base=C major_cov=43/52 major_frequency=6.169e-01 minor_base=A minor_cov=59/0 new_cov=59/0 polymorphism_frequency=3.831e-01 polymorphism_score=35.9 prediction=polymorphism ref_cov=43/52 total_cov=102/52 RA 329 . NC_000913 3912074 0 G A consensus_score=334.2 frequency=1 major_base=A major_cov=54/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/44 RA 330 . NC_000913 3967066 0 C T consensus_score=210.6 frequency=1 major_base=T major_cov=29/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/29 RA 331 . NC_000913 3993531 0 T C consensus_score=273.1 frequency=1 major_base=C major_cov=37/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/36 RA 332 . NC_000913 3996049 0 T A consensus_score=277.0 frequency=1 major_base=A major_cov=42/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/39 RA 333 . NC_000913 4011802 0 C T consensus_score=216.7 frequency=1 major_base=T major_cov=21/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/42 RA 334 . NC_000913 4031457 0 C T consensus_score=283.2 frequency=1 major_base=T major_cov=38/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/47 RA 335 . NC_000913 4031511 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=251.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=33/43 major_frequency=9.870e-01 minor_base=G minor_cov=0/1 new_cov=33/43 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/44 RA 336 . NC_000913 4084903 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=301.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=37/51 major_frequency=9.888e-01 minor_base=T minor_cov=0/1 new_cov=37/51 polymorphism_frequency=9.888e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=37/52 RA 337 . NC_000913 4092703 0 A G consensus_score=407.8 frequency=1 major_base=G major_cov=66/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/47 RA 338 . NC_000913 4113851 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=342.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=59/41 major_frequency=9.901e-01 minor_base=C minor_cov=1/0 new_cov=59/41 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=60/42 RA 339 . NC_000913 4143377 0 C T consensus_score=333.6 frequency=1 major_base=T major_cov=50/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/44 RA 340 . NC_000913 4161248 0 G T consensus_score=223.9 frequency=1 major_base=T major_cov=23/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/41 RA 341 . NC_000913 4164123 0 C G consensus_score=335.6 frequency=1 major_base=G major_cov=50/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/44 RA 342 . NC_000913 4215347 0 T A bias_e_value=3899870 bias_p_value=0.840189 consensus_score=376.8 fisher_strand_p_value=0.490909 frequency=1 ks_quality_p_value=1 major_base=A major_cov=53/56 major_frequency=9.909e-01 minor_base=C minor_cov=1/0 new_cov=53/56 polymorphism_frequency=9.909e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/56 RA 343 . NC_000913 4223638 0 T C bias_e_value=2684250 bias_p_value=0.578296 consensus_score=344.4 fisher_strand_p_value=0.237061 frequency=1 ks_quality_p_value=1 major_base=C major_cov=45/49 major_frequency=9.792e-01 minor_base=A minor_cov=2/0 new_cov=45/49 polymorphism_frequency=9.792e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=47/50 RA 344 . NC_000913 4254787 0 G A bias_e_value=3356960 bias_p_value=0.723226 consensus_score=305.9 fisher_strand_p_value=0.355556 frequency=1 ks_quality_p_value=1 major_base=A major_cov=31/58 major_frequency=9.889e-01 minor_base=C minor_cov=1/0 new_cov=31/58 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/58 RA 345 . NC_000913 4254790 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=305.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/57 major_frequency=9.889e-01 minor_base=C minor_cov=0/1 new_cov=32/57 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/58 RA 346 . NC_000913 4254865 0 T C consensus_score=285.0 frequency=1 major_base=C major_cov=27/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/50 RA 347 . NC_000913 4254871 0 T A consensus_score=271.4 frequency=1 major_base=A major_cov=28/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/50 RA 348 . NC_000913 4255015 0 A T consensus_score=285.0 frequency=1 major_base=T major_cov=38/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/43 RA 349 . NC_000913 4255021 0 A G consensus_score=282.9 frequency=1 major_base=G major_cov=37/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/39 RA 350 . NC_000913 4255198 0 A G consensus_score=240.2 frequency=1 major_base=G major_cov=41/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/24 RA 351 . NC_000913 4255270 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=259.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=42/29 major_frequency=9.861e-01 minor_base=A minor_cov=1/0 new_cov=42/29 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=43/29 RA 352 . NC_000913 4255297 0 A G bias_e_value=3869820 bias_p_value=0.833716 consensus_score=291.3 fisher_strand_p_value=0.481928 frequency=1 ks_quality_p_value=1 major_base=G major_cov=43/39 major_frequency=9.880e-01 minor_base=C minor_cov=0/1 new_cov=43/39 polymorphism_frequency=9.880e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=0/0 total_cov=43/40 RA 353 . NC_000913 4255366 0 C A consensus_score=298.6 frequency=1 major_base=A major_cov=35/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/47 RA 354 . NC_000913 4255402 0 C A consensus_score=294.9 frequency=1 major_base=A major_cov=36/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/49 RA 355 . NC_000913 4255450 0 A C bias_e_value=4641650 bias_p_value=1 consensus_score=289.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=37/46 major_frequency=9.881e-01 minor_base=T minor_cov=0/1 new_cov=37/46 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=38/47 RA 356 . NC_000913 4255459 0 A G consensus_score=307.2 frequency=1 major_base=G major_cov=38/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/47 RA 357 . NC_000913 4255474 0 G A consensus_score=253.8 frequency=1 major_base=A major_cov=27/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/45 RA 358 . NC_000913 4255543 0 A G consensus_score=302.8 frequency=1 major_base=G major_cov=38/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/43 RA 359 . NC_000913 4255606 0 A G bias_e_value=3820040 bias_p_value=0.822991 consensus_score=266.2 fisher_strand_p_value=0.467532 frequency=1 ks_quality_p_value=1 major_base=G major_cov=35/41 major_frequency=9.870e-01 minor_base=A minor_cov=1/0 new_cov=35/41 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/41 RA 360 . NC_000913 4255636 0 T G consensus_score=280.2 frequency=1 major_base=G major_cov=37/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/38 RA 361 . NC_000913 4255717 0 T C consensus_score=269.0 frequency=1 major_base=C major_cov=38/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/36 RA 362 . NC_000913 4255839 0 A G consensus_score=220.4 frequency=1 major_base=G major_cov=27/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/32 RA 363 . NC_000913 4255849 0 T C consensus_score=216.8 frequency=1 major_base=C major_cov=27/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/31 RA 364 . NC_000913 4255852 0 G A consensus_score=195.3 frequency=1 major_base=A major_cov=27/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/31 RA 365 . NC_000913 4255906 0 A T consensus_score=212.7 frequency=1 major_base=T major_cov=25/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/36 RA 366 . NC_000913 4256002 0 A G consensus_score=180.3 frequency=1 major_base=G major_cov=17/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=17/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=17/36 RA 367 . NC_000913 4264742 0 C T consensus_score=278.2 frequency=1 major_base=T major_cov=47/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/36 RA 368 . NC_000913 4264748 0 T C bias_e_value=2780130 bias_p_value=0.598954 consensus_score=289.6 fisher_strand_p_value=0.251721 frequency=1 ks_quality_p_value=1 major_base=C major_cov=44/37 major_frequency=9.643e-01 minor_base=A minor_cov=3/0 new_cov=44/37 polymorphism_frequency=9.643e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/37 RA 369 . NC_000913 4264790 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=289.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=40/38 major_frequency=9.873e-01 minor_base=A minor_cov=1/0 new_cov=40/38 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/38 RA 370 . NC_000913 4264793 0 G T consensus_score=270.0 frequency=1 major_base=T major_cov=41/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/38 RA 371 . NC_000913 4264832 0 G A consensus_score=264.4 frequency=1 major_base=A major_cov=32/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/42 RA 372 . NC_000913 4264931 0 G A bias_e_value=3910860 bias_p_value=0.842557 consensus_score=312.0 fisher_strand_p_value=0.494253 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/42 major_frequency=9.885e-01 minor_base=G minor_cov=0/1 new_cov=44/42 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=44/43 RA 373 . NC_000913 4265078 0 G A consensus_score=360.3 frequency=1 major_base=A major_cov=42/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/59 RA 374 . NC_000913 4265105 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=299.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=41/48 major_frequency=9.889e-01 minor_base=G minor_cov=0/1 new_cov=41/48 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/49 RA 375 . NC_000913 4265117 0 C T consensus_score=319.5 frequency=1 major_base=T major_cov=44/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/50 RA 376 . NC_000913 4265186 0 C T consensus_score=270.0 frequency=1 major_base=T major_cov=38/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/42 RA 377 . NC_000913 4266360 0 G A bias_e_value=3843350 bias_p_value=0.828014 consensus_score=275.7 fisher_strand_p_value=0.474359 frequency=1 ks_quality_p_value=0.999667 major_base=A major_cov=36/41 major_frequency=9.872e-01 minor_base=C minor_cov=1/0 new_cov=36/41 polymorphism_frequency=9.872e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/0 total_cov=37/41 RA 378 . NC_000913 4266534 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=258.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/38 major_frequency=9.868e-01 minor_base=C minor_cov=1/0 new_cov=37/38 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/38 RA 379 . NC_000913 4267333 0 T A consensus_score=302.0 frequency=1 major_base=A major_cov=31/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/56 RA 380 . NC_000913 4269615 0 T G consensus_score=275.0 frequency=1 major_base=G major_cov=42/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/34 RA 381 . NC_000913 4271744 0 G A consensus_score=258.2 frequency=1 major_base=A major_cov=37/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/36 RA 382 . NC_000913 4271781 0 T C consensus_score=260.4 frequency=1 major_base=C major_cov=41/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/32 RA 383 . NC_000913 4271823 0 A G bias_e_value=2704880 bias_p_value=0.58274 consensus_score=227.7 fisher_strand_p_value=0.240163 frequency=1 ks_quality_p_value=1 major_base=G major_cov=32/32 major_frequency=9.552e-01 minor_base=T minor_cov=0/3 new_cov=32/32 polymorphism_frequency=9.552e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/35 RA 384 . NC_000913 4271838 0 C T consensus_score=216.2 frequency=1 major_base=T major_cov=31/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/35 RA 385 . NC_000913 4271862 0 T C bias_e_value=2296910 bias_p_value=0.494848 consensus_score=234.5 fisher_strand_p_value=0.183627 frequency=1 ks_quality_p_value=1 major_base=C major_cov=27/38 major_frequency=9.701e-01 minor_base=A minor_cov=2/0 new_cov=27/38 polymorphism_frequency=9.701e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=29/39 RA 386 . NC_000913 4271955 0 G T consensus_score=199.3 frequency=1 major_base=T major_cov=24/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/39 RA 387 . NC_000913 4271976 0 C G consensus_score=243.7 frequency=1 major_base=G major_cov=27/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/39 RA 388 . NC_000913 4271979 0 C T consensus_score=212.8 frequency=1 major_base=T major_cov=27/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/39 RA 389 . NC_000913 4272000 0 C T consensus_score=176.4 frequency=1 major_base=T major_cov=21/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/34 RA 390 . NC_000913 4272009 0 G A consensus_score=192.9 frequency=1 major_base=A major_cov=19/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/32 RA 391 . NC_000913 4272012 0 G A consensus_score=195.4 frequency=1 major_base=A major_cov=19/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=19/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/32 RA 392 . NC_000913 4272090 0 G A consensus_score=191.3 frequency=1 major_base=A major_cov=10/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=10/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=10/40 RA 393 . NC_000913 4272105 0 C T consensus_score=185.2 frequency=1 major_base=T major_cov=21/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/38 RA 394 . NC_000913 4272111 0 C T consensus_score=189.9 frequency=1 major_base=T major_cov=21/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/38 RA 395 . NC_000913 4272135 0 C T consensus_score=202.5 frequency=1 major_base=T major_cov=24/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/38 RA 396 . NC_000913 4272144 0 C T consensus_score=197.1 frequency=1 major_base=T major_cov=24/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/37 RA 397 . NC_000913 4272153 0 T C bias_e_value=3735870 bias_p_value=0.804858 consensus_score=190.7 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=1 major_base=C major_cov=23/30 major_frequency=9.815e-01 minor_base=A minor_cov=1/0 new_cov=23/30 polymorphism_frequency=9.815e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/30 RA 398 . NC_000913 4272222 0 T C consensus_score=185.8 frequency=1 major_base=C major_cov=32/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/18 RA 399 . NC_000913 4272306 0 A G consensus_score=252.4 frequency=1 major_base=G major_cov=43/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/26 RA 400 . NC_000913 4272327 0 C T consensus_score=244.4 frequency=1 major_base=T major_cov=45/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/26 RA 401 . NC_000913 4272396 0 T G consensus_score=268.6 frequency=1 major_base=G major_cov=49/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/23 RA 402 . NC_000913 4272408 0 A G bias_e_value=3155360 bias_p_value=0.679794 consensus_score=282.6 fisher_strand_p_value=0.315789 frequency=1 ks_quality_p_value=1 major_base=G major_cov=52/23 major_frequency=9.868e-01 minor_base=T minor_cov=0/1 new_cov=52/23 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/24 RA 403 . NC_000913 4272473 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=271.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=51/31 major_frequency=9.880e-01 minor_base=C minor_cov=1/0 new_cov=51/31 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/31 RA 404 . NC_000913 4272495 0 G A consensus_score=304.6 frequency=1 major_base=A major_cov=51/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/36 RA 405 . NC_000913 4272504 0 T C bias_e_value=4641450 bias_p_value=0.999956 consensus_score=327.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99064 major_base=C major_cov=49/38 major_frequency=9.886e-01 minor_base=. minor_cov=1/0 new_cov=49/38 polymorphism_frequency=9.886e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=0/0 total_cov=50/38 RA 406 . NC_000913 4272564 0 A G consensus_score=331.0 frequency=1 major_base=G major_cov=47/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/44 RA 407 . NC_000913 4272582 0 A G consensus_score=290.4 frequency=1 major_base=G major_cov=40/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/38 RA 408 . NC_000913 4272585 0 A G consensus_score=294.3 frequency=1 major_base=G major_cov=40/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/38 RA 409 . NC_000913 4272639 0 C T consensus_score=278.0 frequency=1 major_base=T major_cov=40/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/38 RA 410 . NC_000913 4272657 0 C T consensus_score=247.8 frequency=1 major_base=T major_cov=37/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/36 RA 411 . NC_000913 4272660 0 A G consensus_score=268.6 frequency=1 major_base=G major_cov=37/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/36 RA 412 . NC_000913 4272666 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=284.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=36/43 major_frequency=9.875e-01 minor_base=A minor_cov=0/1 new_cov=36/43 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=37/44 RA 413 . NC_000913 4272690 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=283.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=36/46 major_frequency=9.880e-01 minor_base=G minor_cov=0/1 new_cov=36/46 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=36/47 RA 414 . NC_000913 4272699 0 G A consensus_score=292.2 frequency=1 major_base=A major_cov=33/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/47 RA 415 . NC_000913 4272708 0 C T consensus_score=267.0 frequency=1 major_base=T major_cov=32/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/46 RA 416 . NC_000913 4272720 0 G A consensus_score=282.7 frequency=1 major_base=A major_cov=30/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/50 RA 417 . NC_000913 4272735 0 A G consensus_score=325.1 frequency=1 major_base=G major_cov=38/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/49 RA 418 . NC_000913 4272765 0 A G consensus_score=340.1 frequency=1 major_base=G major_cov=42/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/49 RA 419 . NC_000913 4272857 0 G A consensus_score=326.1 frequency=1 major_base=A major_cov=47/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/47 RA 420 . NC_000913 4272903 0 C T consensus_score=348.4 frequency=1 major_base=T major_cov=50/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/45 RA 421 . NC_000913 4272963 0 A T consensus_score=328.5 frequency=1 major_base=T major_cov=47/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/42 RA 422 . NC_000913 4272993 0 T G consensus_score=366.3 frequency=1 major_base=G major_cov=50/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/47 RA 423 . NC_000913 4272996 0 A G consensus_score=328.1 frequency=1 major_base=G major_cov=50/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/47 RA 424 . NC_000913 4273086 0 T C consensus_score=277.0 frequency=1 major_base=C major_cov=32/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/42 RA 425 . NC_000913 4273089 0 A G consensus_score=278.7 frequency=1 major_base=G major_cov=32/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/42 RA 426 . NC_000913 4273101 0 G A consensus_score=290.6 frequency=1 major_base=A major_cov=35/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/46 RA 427 . NC_000913 4273197 0 C T consensus_score=294.6 frequency=1 major_base=T major_cov=37/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/45 RA 428 . NC_000913 4273212 0 T C consensus_score=298.5 frequency=1 major_base=C major_cov=39/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/42 RA 429 . NC_000913 4273221 0 A C bias_e_value=3792340 bias_p_value=0.817025 consensus_score=321.8 fisher_strand_p_value=0.45977 frequency=1 ks_quality_p_value=1 major_base=C major_cov=39/47 major_frequency=9.885e-01 minor_base=A minor_cov=1/0 new_cov=39/47 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/47 RA 430 . NC_000913 4273302 0 T C consensus_score=294.1 frequency=1 major_base=C major_cov=38/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/41 RA 431 . NC_000913 4273539 0 T C consensus_score=254.1 frequency=1 major_base=C major_cov=31/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/37 RA 432 . NC_000913 4274110 1 . T bias_e_value=4638600 bias_p_value=0.999342 consensus_score=303.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.963952 major_base=T major_cov=46/42 major_frequency=9.670e-01 minor_base=. minor_cov=2/1 new_cov=46/42 polymorphism_frequency=9.670e-01 polymorphism_score=4.0 prediction=consensus ref_cov=2/1 total_cov=48/43 RA 433 . NC_000913 4274277 0 A G consensus_score=368.6 frequency=1 major_base=G major_cov=44/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/55 RA 434 . NC_000913 4274328 0 G C consensus_score=357.4 frequency=1 major_base=C major_cov=46/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/56 RA 435 . NC_000913 4274499 0 C T consensus_score=316.2 frequency=1 major_base=T major_cov=53/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/38 RA 436 . NC_000913 4274653 0 C T bias_e_value=3618020 bias_p_value=0.779467 consensus_score=405.0 fisher_strand_p_value=0.414414 frequency=1 ks_quality_p_value=1 major_base=T major_cov=65/45 major_frequency=9.910e-01 minor_base=G minor_cov=0/1 new_cov=65/45 polymorphism_frequency=9.910e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=65/47 RA 437 . NC_000913 4282332 1 . A bias_e_value=4641650 bias_p_value=1 consensus_score=551.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=86/71 major_frequency=9.812e-01 minor_base=. minor_cov=2/1 new_cov=86/71 polymorphism_frequency=9.812e-01 polymorphism_score=1.8 prediction=consensus ref_cov=2/1 total_cov=88/72 RA 438 . NC_000913 4293781 0 G A consensus_score=216.3 frequency=1 major_base=A major_cov=35/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/31 RA 439 . NC_000913 4293782 0 C T consensus_score=247.4 frequency=1 major_base=T major_cov=35/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/31 RA 440 . NC_000913 4296268 0 T C bias_e_value=4460900 bias_p_value=0.96106 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.0 fisher_strand_p_value=0.734236 frequency=3.077e-01 ks_quality_p_value=1 major_base=T major_cov=16/11 major_frequency=6.923e-01 minor_base=C minor_cov=8/4 new_cov=8/4 polymorphism_frequency=3.077e-01 polymorphism_score=18.2 prediction=polymorphism ref_cov=16/11 total_cov=24/15 RA 441 . NC_000913 4296304 0 A C bias_e_value=4641650 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.8 fisher_strand_p_value=1 frequency=2.432e-01 ks_quality_p_value=1 major_base=A major_cov=14/14 major_frequency=7.568e-01 minor_base=C minor_cov=5/4 new_cov=5/4 polymorphism_frequency=2.432e-01 polymorphism_score=11.5 prediction=polymorphism ref_cov=14/14 total_cov=19/18 RA 442 . NC_000913 4296380 1 . C bias_e_value=3654520 bias_p_value=0.787331 consensus_score=219.0 fisher_strand_p_value=0.424242 frequency=1 ks_quality_p_value=0.998137 major_base=C major_cov=38/27 major_frequency=9.848e-01 minor_base=T minor_cov=0/1 new_cov=38/27 polymorphism_frequency=9.848e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=1/0 total_cov=39/28 RA 443 . NC_000913 4296380 2 . G bias_e_value=3657660 bias_p_value=0.788009 consensus_score=223.0 fisher_strand_p_value=0.424242 frequency=1 ks_quality_p_value=1 major_base=G major_cov=38/27 major_frequency=9.848e-01 minor_base=T minor_cov=0/1 new_cov=38/27 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/28 RA 444 . NC_000913 4325644 0 C T consensus_score=315.4 frequency=1 major_base=T major_cov=34/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/56 RA 445 . NC_000913 4360965 0 C A bias_e_value=0.000656573 bias_p_value=1.41452e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=209.9 fisher_strand_p_value=5.24404e-12 frequency=3.009e-01 ks_quality_p_value=1 major_base=C major_cov=28/51 major_frequency=6.991e-01 minor_base=A minor_cov=34/0 new_cov=34/0 polymorphism_frequency=3.009e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=28/51 total_cov=62/51 RA 446 . NC_000913 4392997 0 G A consensus_score=411.1 frequency=1 major_base=A major_cov=44/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/65 RA 447 . NC_000913 4393552 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=268.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=45/33 major_frequency=9.873e-01 minor_base=G minor_cov=1/0 new_cov=45/33 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=46/33 RA 448 . NC_000913 4396373 0 C T consensus_score=196.6 frequency=1 major_base=T major_cov=27/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/29 RA 449 . NC_000913 4396772 0 T C consensus_score=199.5 frequency=1 major_base=C major_cov=30/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/23 RA 450 . NC_000913 4424009 0 C A consensus_score=204.2 frequency=1 major_base=A major_cov=28/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/30 RA 451 . NC_000913 4425688 0 C A consensus_score=333.1 frequency=1 major_base=A major_cov=41/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/50 RA 452 . NC_000913 4425696 0 C A consensus_score=327.0 frequency=1 major_base=A major_cov=36/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/52 RA 453 . NC_000913 4499661 0 T C consensus_score=327.9 frequency=1 major_base=C major_cov=61/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/38 RA 454 . NC_000913 4510238 0 T G bias_e_value=71185.5 bias_p_value=0.0153362 consensus_score=435.1 fisher_strand_p_value=0.0021468 frequency=1 ks_quality_p_value=1 major_base=G major_cov=73/48 major_frequency=9.453e-01 minor_base=T minor_cov=0/7 new_cov=73/48 polymorphism_frequency=9.453e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=0/7 total_cov=73/55 RA 455 . NC_000913 4518627 0 C A bias_e_value=1986560 bias_p_value=0.427986 consensus_score=298.3 fisher_strand_p_value=0.146552 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/54 major_frequency=9.773e-01 minor_base=C minor_cov=2/0 new_cov=32/54 polymorphism_frequency=9.773e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=35/54 RA 456 . NC_000913 4518628 0 T C consensus_score=324.2 frequency=1 major_base=C major_cov=35/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/54 RA 457 . NC_000913 4532409 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=289.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=39/39 major_frequency=9.873e-01 minor_base=T minor_cov=1/0 new_cov=39/39 polymorphism_frequency=9.873e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/39 RA 458 . NC_000913 4546601 0 C T consensus_score=354.7 frequency=1 major_base=T major_cov=47/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/58 RA 459 . NC_000913 4626064 0 C A bias_e_value=8.63956 bias_p_value=1.86131e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=116.0 fisher_strand_p_value=1.09301e-07 frequency=3.378e-01 ks_quality_p_value=1 major_base=C major_cov=20/29 major_frequency=6.622e-01 minor_base=A minor_cov=25/0 new_cov=25/0 polymorphism_frequency=3.378e-01 polymorphism_score=10.2 prediction=polymorphism ref_cov=20/29 total_cov=45/30 RA 460 . NC_000913 4636925 0 G C bias_e_value=4641650 bias_p_value=1 consensus_score=307.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=44/38 major_frequency=9.880e-01 minor_base=A minor_cov=1/0 new_cov=44/38 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/38 RA 461 . NC_000913 4638240 0 G A consensus_score=307.2 frequency=1 major_base=A major_cov=50/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/42 MC 462 . NC_000913 257908 258683 768 0 left_inside_cov=0 left_outside_cov=78 right_inside_cov=1 right_outside_cov=79 MC 463 . NC_000913 678921 688801 0 955 left_inside_cov=0 left_outside_cov=64 right_inside_cov=10 right_outside_cov=12 MC 464 . NC_000913 1196375 1211479 0 0 left_inside_cov=0 left_outside_cov=11 right_inside_cov=10 right_outside_cov=11 MC 465 . NC_000913 1299499 1300697 1198 0 left_inside_cov=0 left_outside_cov=78 right_inside_cov=1 right_outside_cov=79 MC 466 . NC_000913 1978495 1979270 0 0 left_inside_cov=0 left_outside_cov=68 right_inside_cov=0 right_outside_cov=73 MC 467 . NC_000913 2867280 2867287 0 0 left_inside_cov=0 left_outside_cov=84 right_inside_cov=0 right_outside_cov=84 MC 468 . NC_000913 3134043 3136514 0 0 left_inside_cov=0 left_outside_cov=82 right_inside_cov=0 right_outside_cov=96 MC 469 . NC_000913 3423925 3424437 306 198 left_inside_cov=10 left_outside_cov=12 right_inside_cov=10 right_outside_cov=11 MC 470 . NC_000913 3708467 3708562 0 0 left_inside_cov=0 left_outside_cov=36 right_inside_cov=8 right_outside_cov=12 MC 471 . NC_000913 3933612 3933785 0 0 left_inside_cov=0 left_outside_cov=79 right_inside_cov=4 right_outside_cov=83 MC 472 . NC_000913 4035421 4036872 312 1137 left_inside_cov=10 left_outside_cov=11 right_inside_cov=10 right_outside_cov=12 MC 473 . NC_000913 4640415 4640417 0 0 left_inside_cov=0 left_outside_cov=87 right_inside_cov=0 right_outside_cov=109 JC 474 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=70 coverage_plus=51 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=295 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=292 max_left_minus=292 max_left_plus=233 max_min_left=149 max_min_left_minus=149 max_min_left_plus=148 max_min_right=142 max_min_right_minus=142 max_min_right_plus=138 max_pos_hash_score=590 max_right=287 max_right_minus=287 max_right_plus=284 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.76 new_junction_read_count=123 polymorphism_frequency=1.000e+00 pos_hash_score=70 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=121 JC 475 . NC_000913 111492 -1 NC_000913 111609 1 0 alignment_overlap=19 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.687e-02 junction_possible_overlap_registers=276 key=NC_000913__111492__-1__NC_000913__111590__1__19____300__300__0__0 max_left=126 max_left_minus=126 max_left_plus=24 max_min_left=126 max_min_left_minus=126 max_min_left_plus=24 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=552 max_right=255 max_right_minus=175 max_right_plus=255 neg_log10_pos_hash_p_value=4.8 new_junction_coverage=0.05 new_junction_read_count=3 polymorphism_frequency=4.687e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=19 side_1_possible_overlap_registers=295 side_1_read_count=62 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.98 side_2_overlap=0 side_2_possible_overlap_registers=276 side_2_read_count=64 side_2_redundant=0 total_non_overlap_reads=3 JC 476 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=34 coverage_plus=44 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=287 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=291 max_left_minus=291 max_left_plus=287 max_min_left=143 max_min_left_minus=91 max_min_left_plus=143 max_min_right=144 max_min_right_minus=143 max_min_right_plus=144 max_pos_hash_score=574 max_right=283 max_right_minus=283 max_right_plus=259 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.14 new_junction_read_count=78 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=78 JC 477 . NC_000913 273955 1 NC_000913 362107 1 0 alignment_overlap=1 coverage_minus=41 coverage_plus=39 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__273955__1__NC_000913__362106__1__1____300__300__1__0 max_left=293 max_left_minus=274 max_left_plus=293 max_min_left=144 max_min_left_minus=138 max_min_left_plus=144 max_min_right=135 max_min_right_minus=135 max_min_right_plus=130 max_pos_hash_score=588 max_right=287 max_right_minus=287 max_right_plus=282 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.19 new_junction_read_count=83 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=80 JC 478 . NC_000913 273955 1 NC_000913 480735 1 0 alignment_overlap=0 coverage_minus=29 coverage_plus=34 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__273955__1__NC_000913__480735__1__0____300__300__1__0 max_left=281 max_left_minus=276 max_left_plus=281 max_min_left=142 max_min_left_minus=141 max_min_left_plus=142 max_min_right=147 max_min_right_minus=132 max_min_right_plus=147 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=278 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.94 new_junction_read_count=66 polymorphism_frequency=1.000e+00 pos_hash_score=44 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=63 JC 479 . NC_000913 275149 -1 NC_000913 362110 -1 0 alignment_overlap=0 coverage_minus=39 coverage_plus=23 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__275149__-1__NC_000913__362110__-1__0____300__300__1__0 max_left=293 max_left_minus=287 max_left_plus=293 max_min_left=146 max_min_left_minus=146 max_min_left_plus=131 max_min_right=139 max_min_right_minus=139 max_min_right_plus=135 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=281 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.90 new_junction_read_count=63 polymorphism_frequency=1.000e+00 pos_hash_score=44 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=62 JC 480 . NC_000913 275149 -1 NC_000913 480738 -1 0 alignment_overlap=0 coverage_minus=30 coverage_plus=19 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__275149__-1__NC_000913__480738__-1__0____300__300__1__0 max_left=281 max_left_minus=281 max_left_plus=280 max_min_left=130 max_min_left_minus=112 max_min_left_plus=130 max_min_right=132 max_min_right_minus=132 max_min_right_plus=96 max_pos_hash_score=590 max_right=298 max_right_minus=298 max_right_plus=286 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.70 new_junction_read_count=49 polymorphism_frequency=1.000e+00 pos_hash_score=41 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=49 JC 481 . NC_000913 381260 1 NC_000913 792081 -1 0 alignment_overlap=0 coverage_minus=43 coverage_plus=30 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__381260__1__NC_000913__792081__-1__0____300__300__1__0 max_left=296 max_left_minus=292 max_left_plus=296 max_min_left=148 max_min_left_minus=137 max_min_left_plus=148 max_min_right=150 max_min_right_minus=147 max_min_right_plus=150 max_pos_hash_score=590 max_right=295 max_right_minus=295 max_right_plus=292 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.06 new_junction_read_count=74 polymorphism_frequency=1.000e+00 pos_hash_score=47 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=73 JC 482 . NC_000913 381260 1 NC_000913 1217464 1 0 alignment_overlap=1 coverage_minus=36 coverage_plus=15 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__381260__1__NC_000913__1217463__1__1____300__300__1__0 max_left=295 max_left_minus=295 max_left_plus=294 max_min_left=146 max_min_left_minus=134 max_min_left_plus=146 max_min_right=137 max_min_right_minus=137 max_min_right_plus=117 max_pos_hash_score=588 max_right=287 max_right_minus=287 max_right_plus=165 neg_log10_pos_hash_p_value=0.8 new_junction_coverage=0.76 new_junction_read_count=53 polymorphism_frequency=1.000e+00 pos_hash_score=30 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=51 JC 483 . NC_000913 382590 -1 NC_000913 792077 1 0 alignment_overlap=0 coverage_minus=38 coverage_plus=18 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__382590__-1__NC_000913__792077__1__0____300__300__1__0 max_left=293 max_left_minus=293 max_left_plus=254 max_min_left=149 max_min_left_minus=149 max_min_left_plus=89 max_min_right=138 max_min_right_minus=138 max_min_right_plus=131 max_pos_hash_score=590 max_right=299 max_right_minus=295 max_right_plus=299 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.81 new_junction_read_count=57 polymorphism_frequency=1.000e+00 pos_hash_score=40 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=56 JC 484 . NC_000913 678920 -1 NC_000913 687851 1 0 alignment_overlap=0 coverage_minus=29 coverage_plus=34 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__678920__-1__NC_000913__687851__1__0____300__300__0__1 max_left=296 max_left_minus=296 max_left_plus=288 max_min_left=149 max_min_left_minus=119 max_min_left_plus=149 max_min_right=142 max_min_right_minus=142 max_min_right_plus=141 max_pos_hash_score=590 max_right=293 max_right_minus=293 max_right_plus=263 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.91 new_junction_read_count=64 polymorphism_frequency=1.000e+00 pos_hash_score=39 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=63 JC 485 . NC_000913 1217468 -1 NC_000913 1467910 1 0 alignment_overlap=0 coverage_minus=27 coverage_plus=27 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1217468__-1__NC_000913__1467910__1__0____300__300__0__1 max_left=281 max_left_minus=238 max_left_plus=281 max_min_left=145 max_min_left_minus=145 max_min_left_plus=119 max_min_right=149 max_min_right_minus=149 max_min_right_plus=139 max_pos_hash_score=590 max_right=293 max_right_minus=289 max_right_plus=293 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.79 new_junction_read_count=55 polymorphism_frequency=1.000e+00 pos_hash_score=41 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=54 JC 486 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=5 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.247e-01 junction_possible_overlap_registers=275 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=256 max_left_minus=256 max_left_plus=136 max_min_left=12 max_min_left_minus=12 max_min_left_plus=4 max_min_right=49 max_min_right_minus=49 max_min_right_plus=49 max_pos_hash_score=550 max_right=276 max_right_minus=264 max_right_plus=276 neg_log10_pos_hash_p_value=3.5 new_junction_coverage=0.11 new_junction_read_count=7 polymorphism_frequency=2.247e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.36 side_1_overlap=20 side_1_possible_overlap_registers=295 side_1_read_count=25 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.38 side_2_overlap=0 side_2_possible_overlap_registers=275 side_2_read_count=25 side_2_redundant=0 total_non_overlap_reads=7 JC 487 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=1.421e-01 junction_possible_overlap_registers=275 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=124 max_left_minus=124 max_left_plus=4 max_min_left=124 max_min_left_minus=124 max_min_left_plus=4 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=550 max_right=276 max_right_minus=264 max_right_plus=276 neg_log10_pos_hash_p_value=4.4 new_junction_coverage=0.06 new_junction_read_count=4 polymorphism_frequency=1.421e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.36 side_1_overlap=20 side_1_possible_overlap_registers=295 side_1_read_count=25 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.38 side_2_overlap=0 side_2_possible_overlap_registers=275 side_2_read_count=25 side_2_redundant=0 total_non_overlap_reads=4 JC 488 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=41 coverage_plus=36 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=294 max_left_minus=285 max_left_plus=294 max_min_left=138 max_min_left_minus=138 max_min_left_plus=136 max_min_right=139 max_min_right_minus=115 max_min_right_plus=139 max_pos_hash_score=582 max_right=291 max_right_minus=291 max_right_plus=284 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.13 new_junction_read_count=78 polymorphism_frequency=1.000e+00 pos_hash_score=50 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=77 JC 489 . NC_000913 1396044 1 NC_000913 1743493 -1 0 alignment_overlap=0 coverage_minus=28 coverage_plus=19 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1396044__1__NC_000913__1743493__-1__0____300__300__1__0 max_left=290 max_left_minus=287 max_left_plus=290 max_min_left=114 max_min_left_minus=114 max_min_left_plus=45 max_min_right=137 max_min_right_minus=137 max_min_right_plus=133 max_pos_hash_score=590 max_right=285 max_right_minus=282 max_right_plus=285 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.71 new_junction_read_count=50 polymorphism_frequency=1.000e+00 pos_hash_score=36 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=47 JC 490 . NC_000913 1397238 -1 NC_000913 1743490 1 0 alignment_overlap=0 coverage_minus=26 coverage_plus=13 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1397238__-1__NC_000913__1743490__1__0____300__300__1__0 max_left=294 max_left_minus=278 max_left_plus=294 max_min_left=132 max_min_left_minus=122 max_min_left_plus=132 max_min_right=147 max_min_right_minus=147 max_min_right_plus=127 max_pos_hash_score=590 max_right=294 max_right_minus=294 max_right_plus=288 neg_log10_pos_hash_p_value=0.8 new_junction_coverage=0.56 new_junction_read_count=39 polymorphism_frequency=1.000e+00 pos_hash_score=30 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=39 JC 491 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=35 coverage_plus=32 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0 max_left=294 max_left_minus=281 max_left_plus=294 max_min_left=140 max_min_left_minus=132 max_min_left_plus=140 max_min_right=148 max_min_right_minus=148 max_min_right_plus=145 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=285 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.97 new_junction_read_count=68 polymorphism_frequency=1.000e+00 pos_hash_score=45 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=67 JC 492 . NC_000913 1435353 1 NC_000913 1467910 1 0 alignment_overlap=0 coverage_minus=20 coverage_plus=34 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1435353__1__NC_000913__1467910__1__0____300__300__0__1 max_left=295 max_left_minus=284 max_left_plus=295 max_min_left=148 max_min_left_minus=148 max_min_left_plus=148 max_min_right=149 max_min_right_minus=139 max_min_right_plus=149 max_pos_hash_score=590 max_right=288 max_right_minus=288 max_right_plus=271 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.83 new_junction_read_count=58 polymorphism_frequency=1.000e+00 pos_hash_score=43 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=54 JC 493 . NC_000913 1435357 -1 NC_000913 1469240 -1 0 alignment_overlap=0 coverage_minus=23 coverage_plus=22 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1435357__-1__NC_000913__1469240__-1__0____300__300__0__1 max_left=295 max_left_minus=246 max_left_plus=295 max_min_left=143 max_min_left_minus=143 max_min_left_plus=136 max_min_right=150 max_min_right_minus=150 max_min_right_plus=147 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=269 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.67 new_junction_read_count=47 polymorphism_frequency=1.000e+00 pos_hash_score=33 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=45 JC 494 . NC_000913 1467910 1 NC_000913 1656171 -1 0 alignment_overlap=1 coverage_minus=24 coverage_plus=19 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1467910__1__NC_000913__1656172__-1__1____300__300__1__0 max_left=263 max_left_minus=257 max_left_plus=263 max_min_left=137 max_min_left_minus=119 max_min_left_plus=137 max_min_right=149 max_min_right_minus=148 max_min_right_plus=149 max_pos_hash_score=588 max_right=294 max_right_minus=262 max_right_plus=294 neg_log10_pos_hash_p_value=0.9 new_junction_coverage=0.62 new_junction_read_count=43 polymorphism_frequency=1.000e+00 pos_hash_score=29 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=43 JC 495 . NC_000913 1469240 -1 NC_000913 1656167 1 0 alignment_overlap=0 coverage_minus=17 coverage_plus=23 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1469240__-1__NC_000913__1656167__1__0____300__300__1__0 max_left=292 max_left_minus=292 max_left_plus=292 max_min_left=145 max_min_left_minus=145 max_min_left_plus=119 max_min_right=134 max_min_right_minus=134 max_min_right_plus=108 max_pos_hash_score=590 max_right=297 max_right_minus=288 max_right_plus=297 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.59 new_junction_read_count=41 polymorphism_frequency=9.758e-01 pos_hash_score=33 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=40 JC 496 . NC_000913 1469240 -1 NC_000913 1671703 1 0 alignment_overlap=0 coverage_minus=19 coverage_plus=18 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1469240__-1__NC_000913__1671703__1__0____300__300__1__0 max_left=296 max_left_minus=292 max_left_plus=296 max_min_left=137 max_min_left_minus=137 max_min_left_plus=95 max_min_right=99 max_min_right_minus=84 max_min_right_plus=99 max_pos_hash_score=590 max_right=294 max_right_minus=294 max_right_plus=268 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.57 new_junction_read_count=40 polymorphism_frequency=1.000e+00 pos_hash_score=26 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=37 JC 497 . NC_000913 1469241 -1 NC_000913 1469295 1 -8 alignment_overlap=-8 coverage_minus=42 coverage_plus=37 flanking_left=300 flanking_right=300 frequency=NA junction_possible_overlap_registers=287 key=NC_000913__1469241__-1__NC_000913__1469295__1__-8__GTACGTAA__300__300__1__1 max_left=288 max_left_minus=288 max_left_plus=270 max_min_left=136 max_min_left_minus=136 max_min_left_plus=136 max_min_right=130 max_min_right_minus=118 max_min_right_plus=130 max_pos_hash_score=574 max_right=289 max_right_minus=289 max_right_plus=288 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.17 new_junction_read_count=80 polymorphism_frequency=NA pos_hash_score=59 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=79 unique_read_sequence=GTACGTAA JC 498 . NC_000913 1651548 -1 NC_000913 1671707 -1 0 alignment_overlap=0 coverage_minus=31 coverage_plus=19 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1651548__-1__NC_000913__1671707__-1__0____300__300__1__0 max_left=284 max_left_minus=284 max_left_plus=259 max_min_left=129 max_min_left_minus=129 max_min_left_plus=121 max_min_right=141 max_min_right_minus=141 max_min_right_plus=122 max_pos_hash_score=590 max_right=299 max_right_minus=295 max_right_plus=299 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.73 new_junction_read_count=51 polymorphism_frequency=1.000e+00 pos_hash_score=35 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=50 JC 499 . NC_000913 1743492 -1 NC_000913 2290114 -1 0 alignment_overlap=3 coverage_minus=0 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__1743492__-1__NC_000913__2290117__-1__3____300__300__0__0 max_left=265 max_left_minus=0 max_left_plus=265 max_min_left=130 max_min_left_minus=0 max_min_left_plus=130 max_min_right=108 max_min_right_minus=0 max_min_right_plus=108 max_pos_hash_score=584 max_right=245 max_right_minus=0 max_right_plus=245 neg_log10_pos_hash_p_value=4.2 new_junction_coverage=0.07 new_junction_read_count=5 polymorphism_frequency=1.000e+00 pos_hash_score=5 prediction=consensus reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=3 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=5 JC 500 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=28 coverage_plus=44 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1 max_left=299 max_left_minus=294 max_left_plus=299 max_min_left=147 max_min_left_minus=147 max_min_left_plus=138 max_min_right=145 max_min_right_minus=145 max_min_right_plus=134 max_pos_hash_score=590 max_right=286 max_right_minus=286 max_right_plus=286 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.04 new_junction_read_count=73 polymorphism_frequency=1.000e+00 pos_hash_score=52 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=72 JC 501 . NC_000913 2070271 -1 NC_000913 2452057 1 0 alignment_overlap=2 coverage_minus=37 coverage_plus=24 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__2070271__-1__NC_000913__2452055__1__2____300__300__1__0 max_left=295 max_left_minus=295 max_left_plus=277 max_min_left=135 max_min_left_minus=135 max_min_left_plus=123 max_min_right=149 max_min_right_minus=142 max_min_right_plus=149 max_pos_hash_score=586 max_right=295 max_right_minus=295 max_right_plus=284 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.88 new_junction_read_count=61 polymorphism_frequency=1.000e+00 pos_hash_score=40 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=61 JC 502 . NC_000913 2281487 -1 NC_000913 2281969 1 0 alignment_overlap=4 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=7.006e-02 junction_possible_overlap_registers=291 key=NC_000913__2281487__-1__NC_000913__2281965__1__4____300__300__0__0 max_left=100 max_left_minus=100 max_left_plus=100 max_min_left=59 max_min_left_minus=59 max_min_left_plus=59 max_min_right=64 max_min_right_minus=64 max_min_right_plus=64 max_pos_hash_score=582 max_right=93 max_right_minus=93 max_right_plus=93 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.06 new_junction_read_count=4 polymorphism_frequency=7.006e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.86 side_1_overlap=4 side_1_possible_overlap_registers=295 side_1_read_count=60 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=47 side_2_redundant=0 total_non_overlap_reads=4 JC 503 . NC_000913 2288919 1 NC_000913 2788794 -1 0 alignment_overlap=0 coverage_minus=42 coverage_plus=26 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2288919__1__NC_000913__2788794__-1__0____300__300__1__0 max_left=280 max_left_minus=280 max_left_plus=280 max_min_left=147 max_min_left_minus=144 max_min_left_plus=147 max_min_right=140 max_min_right_minus=135 max_min_right_plus=140 max_pos_hash_score=590 max_right=298 max_right_minus=298 max_right_plus=290 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.01 new_junction_read_count=71 polymorphism_frequency=1.000e+00 pos_hash_score=46 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=68 JC 504 . NC_000913 2288919 1 NC_000913 3638512 -1 0 alignment_overlap=0 coverage_minus=26 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2288919__1__NC_000913__3638512__-1__0____300__300__1__0 max_left=284 max_left_minus=278 max_left_plus=284 max_min_left=146 max_min_left_minus=132 max_min_left_plus=146 max_min_right=140 max_min_right_minus=134 max_min_right_plus=140 max_pos_hash_score=590 max_right=294 max_right_minus=286 max_right_plus=294 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.01 new_junction_read_count=71 polymorphism_frequency=1.000e+00 pos_hash_score=45 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=68 JC 505 . NC_000913 2290113 -1 NC_000913 2788791 1 0 alignment_overlap=0 coverage_minus=59 coverage_plus=56 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2290113__-1__NC_000913__2788791__1__0____300__300__1__0 max_left=294 max_left_minus=294 max_left_plus=293 max_min_left=129 max_min_left_minus=125 max_min_left_plus=129 max_min_right=149 max_min_right_minus=149 max_min_right_plus=101 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=280 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.68 new_junction_read_count=118 polymorphism_frequency=1.000e+00 pos_hash_score=71 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=115 JC 506 . NC_000913 2290113 -1 NC_000913 3134042 -1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=27 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2290113__-1__NC_000913__3134042__-1__0____300__300__1__0 max_left=293 max_left_minus=282 max_left_plus=293 max_min_left=142 max_min_left_minus=135 max_min_left_plus=142 max_min_right=146 max_min_right_minus=145 max_min_right_plus=146 max_pos_hash_score=590 max_right=295 max_right_minus=295 max_right_plus=293 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.17 new_junction_read_count=82 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=80 JC 507 . NC_000913 2290113 -1 NC_000913 3638509 1 0 alignment_overlap=0 coverage_minus=43 coverage_plus=36 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2290113__-1__NC_000913__3638509__1__0____300__300__1__0 max_left=288 max_left_minus=288 max_left_plus=277 max_min_left=133 max_min_left_minus=132 max_min_left_plus=133 max_min_right=149 max_min_right_minus=142 max_min_right_plus=149 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=291 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.16 new_junction_read_count=81 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=79 JC 508 . NC_000913 2357730 -1 NC_000913 2357926 1 0 alignment_overlap=40 coverage_minus=2 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=8.450e-02 junction_possible_overlap_registers=255 key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0 max_left=161 max_left_minus=161 max_left_plus=153 max_min_left=45 max_min_left_minus=0 max_min_left_plus=45 max_min_right=107 max_min_right_minus=87 max_min_right_plus=107 max_pos_hash_score=510 max_right=245 max_right_minus=87 max_right_plus=245 neg_log10_pos_hash_p_value=3.5 new_junction_coverage=0.10 new_junction_read_count=6 polymorphism_frequency=8.450e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.16 side_1_overlap=40 side_1_possible_overlap_registers=295 side_1_read_count=81 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.99 side_2_overlap=0 side_2_possible_overlap_registers=255 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=6 JC 509 . NC_000913 2452061 -1 NC_000913 2996361 1 0 alignment_overlap=0 coverage_minus=26 coverage_plus=37 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2452061__-1__NC_000913__2996361__1__0____300__300__0__1 max_left=294 max_left_minus=294 max_left_plus=282 max_min_left=120 max_min_left_minus=120 max_min_left_plus=119 max_min_right=149 max_min_right_minus=132 max_min_right_plus=149 max_pos_hash_score=590 max_right=267 max_right_minus=267 max_right_plus=258 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.93 new_junction_read_count=65 polymorphism_frequency=1.000e+00 pos_hash_score=41 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=63 JC 510 . NC_000913 2653419 -1 NC_000913 2653746 1 0 alignment_overlap=25 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.871e-02 junction_possible_overlap_registers=270 key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0 max_left=105 max_left_minus=105 max_left_plus=105 max_min_left=39 max_min_left_minus=0 max_min_left_plus=39 max_min_right=52 max_min_right_minus=52 max_min_right_plus=52 max_pos_hash_score=540 max_right=193 max_right_minus=52 max_right_plus=193 neg_log10_pos_hash_p_value=4.8 new_junction_coverage=0.06 new_junction_read_count=4 polymorphism_frequency=6.871e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=25 side_1_possible_overlap_registers=295 side_1_read_count=54 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.92 side_2_overlap=0 side_2_possible_overlap_registers=270 side_2_read_count=59 side_2_redundant=0 total_non_overlap_reads=3 JC 511 . NC_000913 2867279 -1 NC_000913 2867288 1 0 alignment_overlap=0 coverage_minus=40 coverage_plus=41 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2867279__-1__NC_000913__2867288__1__0____300__300__0__0 max_left=298 max_left_minus=298 max_left_plus=286 max_min_left=130 max_min_left_minus=130 max_min_left_plus=129 max_min_right=135 max_min_right_minus=135 max_min_right_plus=119 max_pos_hash_score=590 max_right=293 max_right_minus=293 max_right_plus=281 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.20 new_junction_read_count=84 polymorphism_frequency=1.000e+00 pos_hash_score=48 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=81 JC 512 . NC_000913 2888412 -1 NC_000913 2888992 1 0 alignment_overlap=11 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.040e-02 junction_possible_overlap_registers=284 key=NC_000913__2888412__-1__NC_000913__2888981__1__11____300__300__0__0 max_left=48 max_left_minus=48 max_left_plus=48 max_min_left=48 max_min_left_minus=48 max_min_left_plus=48 max_min_right=9 max_min_right_minus=0 max_min_right_plus=9 max_pos_hash_score=568 max_right=76 max_right_minus=76 max_right_plus=76 neg_log10_pos_hash_p_value=4.9 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=4.040e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.96 side_1_overlap=11 side_1_possible_overlap_registers=295 side_1_read_count=67 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.16 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=78 side_2_redundant=0 total_non_overlap_reads=3 JC 513 . NC_000913 2904285 -1 NC_000913 2904408 1 0 alignment_overlap=29 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=7.131e-02 junction_possible_overlap_registers=266 key=NC_000913__2904285__-1__NC_000913__2904379__1__29____300__300__0__0 max_left=202 max_left_minus=202 max_left_plus=201 max_min_left=97 max_min_left_minus=35 max_min_left_plus=97 max_min_right=70 max_min_right_minus=69 max_min_right_plus=70 max_pos_hash_score=532 max_right=235 max_right_minus=235 max_right_plus=174 neg_log10_pos_hash_p_value=4.3 new_junction_coverage=0.06 new_junction_read_count=4 polymorphism_frequency=7.131e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=29 side_1_possible_overlap_registers=295 side_1_read_count=49 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=266 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=4 JC 514 . NC_000913 2913392 1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=28 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1 max_left=295 max_left_minus=280 max_left_plus=295 max_min_left=144 max_min_left_minus=144 max_min_left_plus=141 max_min_right=144 max_min_right_minus=144 max_min_right_plus=137 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=277 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.07 new_junction_read_count=75 polymorphism_frequency=1.000e+00 pos_hash_score=47 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=74 JC 515 . NC_000913 2913396 -1 NC_000913 2996361 1 0 alignment_overlap=0 coverage_minus=33 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1 max_left=295 max_left_minus=295 max_left_plus=295 max_min_left=147 max_min_left_minus=146 max_min_left_plus=147 max_min_right=139 max_min_right_minus=99 max_min_right_plus=139 max_pos_hash_score=590 max_right=293 max_right_minus=284 max_right_plus=293 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.16 new_junction_read_count=81 polymorphism_frequency=1.000e+00 pos_hash_score=51 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=79 JC 516 . NC_000913 3131340 -1 NC_000913 3136515 1 0 alignment_overlap=0 coverage_minus=49 coverage_plus=45 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3131340__-1__NC_000913__3136515__1__0____300__300__1__0 max_left=293 max_left_minus=285 max_left_plus=293 max_min_left=139 max_min_left_minus=139 max_min_left_plus=129 max_min_right=145 max_min_right_minus=135 max_min_right_plus=145 max_pos_hash_score=590 max_right=295 max_right_minus=295 max_right_plus=278 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.37 new_junction_read_count=96 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=94 JC 517 . NC_000913 3186096 1 NC_000913 3367057 1 0 alignment_overlap=0 coverage_minus=47 coverage_plus=38 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3186096__1__NC_000913__3367057__1__0____300__300__1__0 max_left=297 max_left_minus=292 max_left_plus=297 max_min_left=135 max_min_left_minus=135 max_min_left_plus=134 max_min_right=141 max_min_right_minus=141 max_min_right_plus=138 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=292 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.21 new_junction_read_count=85 polymorphism_frequency=1.000e+00 pos_hash_score=49 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=85 JC 518 . NC_000913 3186096 1 NC_000913 3828674 1 0 alignment_overlap=0 coverage_minus=85 coverage_plus=43 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3186096__1__NC_000913__3828674__1__0____300__300__1__0 max_left=296 max_left_minus=292 max_left_plus=296 max_min_left=147 max_min_left_minus=147 max_min_left_plus=144 max_min_right=139 max_min_right_minus=127 max_min_right_plus=139 max_pos_hash_score=590 max_right=299 max_right_minus=299 max_right_plus=299 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.87 new_junction_read_count=131 polymorphism_frequency=1.000e+00 pos_hash_score=80 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=128 JC 519 . NC_000913 3186096 1 NC_000913 3939123 -1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=37 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3186096__1__NC_000913__3939123__-1__0____300__300__1__0 max_left=297 max_left_minus=292 max_left_plus=297 max_min_left=147 max_min_left_minus=147 max_min_left_plus=143 max_min_right=149 max_min_right_minus=141 max_min_right_plus=149 max_pos_hash_score=590 max_right=295 max_right_minus=295 max_right_plus=279 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.18 new_junction_read_count=83 polymorphism_frequency=1.000e+00 pos_hash_score=53 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=83 JC 520 . NC_000913 3187426 -1 NC_000913 3367061 -1 0 alignment_overlap=1 coverage_minus=47 coverage_plus=26 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3187426__-1__NC_000913__3367062__-1__1____300__300__1__0 max_left=278 max_left_minus=257 max_left_plus=278 max_min_left=146 max_min_left_minus=138 max_min_left_plus=146 max_min_right=147 max_min_right_minus=147 max_min_right_plus=95 max_pos_hash_score=588 max_right=297 max_right_minus=297 max_right_plus=279 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.07 new_junction_read_count=75 polymorphism_frequency=1.000e+00 pos_hash_score=52 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=73 JC 521 . NC_000913 3187426 -1 NC_000913 3828678 -1 0 alignment_overlap=1 coverage_minus=64 coverage_plus=54 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3187426__-1__NC_000913__3828679__-1__1____300__300__1__0 max_left=295 max_left_minus=295 max_left_plus=295 max_min_left=149 max_min_left_minus=140 max_min_left_plus=149 max_min_right=149 max_min_right_minus=144 max_min_right_plus=149 max_pos_hash_score=588 max_right=295 max_right_minus=295 max_right_plus=294 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.75 new_junction_read_count=122 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=118 JC 522 . NC_000913 3437349 1 NC_000913 4508679 -1 0 alignment_overlap=0 coverage_minus=50 coverage_plus=58 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3437349__1__NC_000913__4508679__-1__0____300__300__0__1 max_left=291 max_left_minus=291 max_left_plus=283 max_min_left=149 max_min_left_minus=145 max_min_left_plus=149 max_min_right=148 max_min_right_minus=146 max_min_right_plus=148 max_pos_hash_score=590 max_right=298 max_right_minus=298 max_right_plus=297 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.58 new_junction_read_count=111 polymorphism_frequency=1.000e+00 pos_hash_score=74 prediction=consensus read_count_offset=2 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=108 JC 523 . NC_000913 3437350 -1 NC_000913 4507459 1 0 alignment_overlap=0 coverage_minus=50 coverage_plus=40 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3437350__-1__NC_000913__4507459__1__0____300__300__0__1 max_left=294 max_left_minus=294 max_left_plus=283 max_min_left=149 max_min_left_minus=149 max_min_left_plus=124 max_min_right=150 max_min_right_minus=150 max_min_right_plus=150 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=289 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.31 new_junction_read_count=92 polymorphism_frequency=1.000e+00 pos_hash_score=60 prediction=consensus read_count_offset=2 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=90 JC 524 . NC_000913 3610714 -1 NC_000913 3611060 1 0 alignment_overlap=10 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.186e-02 junction_possible_overlap_registers=285 key=NC_000913__3610714__-1__NC_000913__3611050__1__10____300__300__0__0 max_left=272 max_left_minus=106 max_left_plus=272 max_min_left=106 max_min_left_minus=106 max_min_left_plus=106 max_min_right=17 max_min_right_minus=0 max_min_right_plus=17 max_pos_hash_score=570 max_right=173 max_right_minus=173 max_right_plus=173 neg_log10_pos_hash_p_value=4.9 new_junction_coverage=0.04 new_junction_read_count=3 polymorphism_frequency=3.186e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.56 side_1_overlap=10 side_1_possible_overlap_registers=295 side_1_read_count=109 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=77 side_2_redundant=0 total_non_overlap_reads=3 JC 525 . NC_000913 3652036 1 NC_000913 3766086 1 0 alignment_overlap=0 coverage_minus=57 coverage_plus=70 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3652036__1__NC_000913__3766086__1__0____300__300__1__0 max_left=294 max_left_minus=294 max_left_plus=294 max_min_left=148 max_min_left_minus=146 max_min_left_plus=148 max_min_right=148 max_min_right_minus=138 max_min_right_plus=148 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=296 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.83 new_junction_read_count=128 polymorphism_frequency=1.000e+00 pos_hash_score=78 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=127 JC 526 . NC_000913 3653230 -1 NC_000913 3766089 -1 0 alignment_overlap=0 coverage_minus=66 coverage_plus=39 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3653230__-1__NC_000913__3766089__-1__0____300__300__1__0 max_left=293 max_left_minus=282 max_left_plus=293 max_min_left=146 max_min_left_minus=146 max_min_left_plus=121 max_min_right=149 max_min_right_minus=149 max_min_right_plus=120 max_pos_hash_score=590 max_right=299 max_right_minus=299 max_right_plus=282 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.54 new_junction_read_count=108 polymorphism_frequency=1.000e+00 pos_hash_score=68 prediction=consensus read_count_offset=4 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=291 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=105 JC 527 . NC_000913 3708466 -1 NC_000913 3708635 1 0 alignment_overlap=108 coverage_minus=18 coverage_plus=17 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=187 key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0 max_left=170 max_left_minus=158 max_left_plus=170 max_min_left=92 max_min_left_minus=92 max_min_left_plus=50 max_min_right=92 max_min_right_minus=63 max_min_right_plus=92 max_pos_hash_score=374 max_right=189 max_right_minus=184 max_right_plus=189 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.81 new_junction_read_count=36 polymorphism_frequency=1.000e+00 pos_hash_score=22 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=108 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=187 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=35 JC 528 . NC_000913 3822646 1 NC_000913 3822651 -1 0 alignment_overlap=0 coverage_minus=39 coverage_plus=43 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0 max_left=297 max_left_minus=288 max_left_plus=297 max_min_left=142 max_min_left_minus=141 max_min_left_plus=142 max_min_right=146 max_min_right_minus=146 max_min_right_plus=124 max_pos_hash_score=590 max_right=298 max_right_minus=294 max_right_plus=298 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.21 new_junction_read_count=85 polymorphism_frequency=9.605e-01 pos_hash_score=51 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.03 side_1_overlap=0 side_1_possible_overlap_registers=295 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.07 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=5 side_2_redundant=0 total_non_overlap_reads=82 JC 529 . NC_000913 3933611 -1 NC_000913 3933786 1 0 alignment_overlap=1 coverage_minus=46 coverage_plus=31 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3933611__-1__NC_000913__3933785__1__1____300__300__0__0 max_left=294 max_left_minus=245 max_left_plus=294 max_min_left=146 max_min_left_minus=146 max_min_left_plus=143 max_min_right=149 max_min_right_minus=145 max_min_right_plus=149 max_pos_hash_score=588 max_right=295 max_right_minus=295 max_right_plus=279 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.13 new_junction_read_count=79 polymorphism_frequency=1.000e+00 pos_hash_score=53 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=1 side_1_possible_overlap_registers=295 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=77 JC 530 . NC_000913 3939119 1 NC_000913 4499511 -1 0 alignment_overlap=0 coverage_minus=53 coverage_plus=48 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__3939119__1__NC_000913__4499511__-1__0____300__300__0__1 max_left=298 max_left_minus=298 max_left_plus=276 max_min_left=139 max_min_left_minus=111 max_min_left_plus=139 max_min_right=147 max_min_right_minus=143 max_min_right_plus=147 max_pos_hash_score=590 max_right=285 max_right_minus=280 max_right_plus=285 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.46 new_junction_read_count=102 polymorphism_frequency=1.000e+00 pos_hash_score=67 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=101 JC 531 . NC_000913 4094350 -1 NC_000913 4094719 1 0 alignment_overlap=41 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.000e-01 junction_possible_overlap_registers=254 key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0 max_left=151 max_left_minus=151 max_left_plus=119 max_min_left=119 max_min_left_minus=0 max_min_left_plus=119 max_min_right=116 max_min_right_minus=116 max_min_right_plus=0 max_pos_hash_score=508 max_right=223 max_right_minus=116 max_right_plus=223 neg_log10_pos_hash_p_value=3.5 new_junction_coverage=0.10 new_junction_read_count=6 polymorphism_frequency=1.000e-01 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.93 side_1_overlap=41 side_1_possible_overlap_registers=295 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.86 side_2_overlap=0 side_2_possible_overlap_registers=254 side_2_read_count=52 side_2_redundant=0 total_non_overlap_reads=6 JC 532 . NC_000913 4392437 -1 NC_000913 4392661 1 0 alignment_overlap=78 coverage_minus=2 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=9.928e-02 junction_possible_overlap_registers=217 key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0 max_left=193 max_left_minus=120 max_left_plus=193 max_min_left=78 max_min_left_minus=42 max_min_left_plus=78 max_min_right=91 max_min_right_minus=91 max_min_right_plus=91 max_pos_hash_score=434 max_right=180 max_right_minus=180 max_right_plus=153 neg_log10_pos_hash_p_value=3.4 new_junction_coverage=0.12 new_junction_read_count=6 polymorphism_frequency=9.928e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.87 side_1_overlap=78 side_1_possible_overlap_registers=295 side_1_read_count=61 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.24 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=64 side_2_redundant=0 total_non_overlap_reads=6 JC 533 . NC_000913 4498180 1 NC_000913 4499511 -1 0 alignment_overlap=0 coverage_minus=17 coverage_plus=16 flanking_left=300 flanking_right=300 frequency=NA junction_possible_overlap_registers=295 key=NC_000913__4498180__1__NC_000913__4499511__-1__0____300__300__0__1 max_left=271 max_left_minus=271 max_left_plus=240 max_min_left=138 max_min_left_minus=138 max_min_left_plus=72 max_min_right=142 max_min_right_minus=116 max_min_right_plus=142 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=279 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.47 new_junction_read_count=33 polymorphism_frequency=NA pos_hash_score=25 prediction=unknown side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=33 JC 534 . NC_000913 4499511 -1 NC_000913 4640414 -1 0 alignment_overlap=0 coverage_minus=55 coverage_plus=32 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=295 key=NC_000913__4499511__-1__NC_000913__4640414__-1__0____300__300__1__0 max_left=294 max_left_minus=276 max_left_plus=294 max_min_left=149 max_min_left_minus=149 max_min_left_plus=138 max_min_right=141 max_min_right_minus=141 max_min_right_plus=133 max_pos_hash_score=590 max_right=296 max_right_minus=295 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.24 new_junction_read_count=87 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=295 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=87 JC 535 . NC_000913 4507459 1 NC_000913 4640418 1 0 alignment_overlap=1 coverage_minus=53 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__4507459__1__NC_000913__4640417__1__1____300__300__1__0 max_left=297 max_left_minus=297 max_left_plus=297 max_min_left=147 max_min_left_minus=147 max_min_left_plus=144 max_min_right=136 max_min_right_minus=135 max_min_right_plus=136 max_pos_hash_score=588 max_right=295 max_right_minus=295 max_right_plus=287 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.55 new_junction_read_count=108 polymorphism_frequency=1.000e+00 pos_hash_score=68 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=106 JC 536 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=13 coverage_plus=13 flanking_left=300 flanking_right=300 frequency=2.246e-01 junction_possible_overlap_registers=286 key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0 max_left=282 max_left_minus=282 max_left_plus=256 max_min_left=141 max_min_left_minus=140 max_min_left_plus=141 max_min_right=128 max_min_right_minus=128 max_min_right_plus=81 max_pos_hash_score=572 max_right=276 max_right_minus=269 max_right_plus=276 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.38 new_junction_read_count=26 polymorphism_frequency=2.246e-01 pos_hash_score=25 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.63 side_1_overlap=9 side_1_possible_overlap_registers=295 side_1_read_count=114 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.02 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=69 side_2_redundant=0 total_non_overlap_reads=26 JC 537 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=13 coverage_plus=17 flanking_left=300 flanking_right=300 frequency=2.577e-01 junction_possible_overlap_registers=286 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0 max_left=282 max_left_minus=242 max_left_plus=282 max_min_left=144 max_min_left_minus=144 max_min_left_plus=139 max_min_right=139 max_min_right_minus=129 max_min_right_plus=139 max_pos_hash_score=572 max_right=280 max_right_minus=280 max_right_plus=228 neg_log10_pos_hash_p_value=1.0 new_junction_coverage=0.47 new_junction_read_count=32 polymorphism_frequency=2.577e-01 pos_hash_score=26 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.70 side_1_overlap=9 side_1_possible_overlap_registers=295 side_1_read_count=119 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.02 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=69 side_2_redundant=0 total_non_overlap_reads=30 UN 538 . 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