mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 17,917 | G→A | L143L (CTG→CTA) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 35,649 | G→A | R172C (CGT→TGT) | caiD ← | crotonobetainyl‑CoA hydratase |
| RA | 56,141 | C→T | Q323Q (CAG→CAA) | lptD ← | lipopolysaccharide assembly protein LptD |
| RA | 69,387 | C→T | S221N (AGT→AAT) | araB ← | ribulokinase |
| RA | 109,960 | G→A | R561H (CGT→CAT) | secA → | protein translocation ATPase |
| RA | 124,134 | C→T | A373V (GCA→GTA) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 128,449 | G→A | V180I (GTA→ATA) | lpd → | lipoamide dehydrogenase |
| RA | 129,640 | C→T | V541M (GTG→ATG) | yacH ← | DUF3300 domain‑containing protein YacH |
| RA | 137,860 | G→A | D260N (GAC→AAC) | cueO → | multicopper oxidase CueO |
| RA | 140,773 | G→A | S151S (AGC→AGT) | gcd ← | quinoprotein glucose dehydrogenase |
| RA | 143,354 | C→T | T192T (ACC→ACT) | yadG → | putative ABC transporter ATP‑binding protein YadG |
| RA | 143,500 | C→T | P241L (CCG→CTG) | yadG → | putative ABC transporter ATP‑binding protein YadG |
| RA | 151,929 | C→T | K101K (AAG→AAA) | yadL ← | putative fimbrial protein YadL |
| RA | 157,894 | C→T | E411E (GAG→GAA) | pcnB ← | poly(A) polymerase I |
| RA | 159,678 | C→T | Q145Q (CAG→CAA) | gluQ ← | glutamyl‑Q tRNA(Asp) synthetase |
| RA | 163,611 | C→T | R503C (CGC→TGC) | hrpB → | RNA‑dependent NTPase HrpB |
| RA | 164,911 | G→A | G61D (GGC→GAC) G61D (GGC→GAC) |
mrcB → mrcB → |
peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB |
| RA | 167,400 | C→T | intergenic (+136/‑84) | mrcB → / → fhuA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor |
| RA | 176,263 | C→T | A386V (GCG→GTG) | clcA → | chloride:H(+) antiporter ClcA |
| RA | 183,927 | C→T | V57I (GTC→ATC) | yaeH ← | DUF3461 domain‑containing protein YaeH |
| RA | 184,537 | C→T | S178N (AGC→AAC) | yaeI ← | phosphodiesterase YaeI |
| RA | 197,617 | C→T | L358F (CTC→TTC) | rseP → | intramembrane zinc metalloprotease RseP |
| RA | 200,671 | C→T | L64L (CTG→TTG) | skp → | periplasmic chaperone Skp |
| RA | 201,383 | C→T | A138V (GCC→GTC) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase |
| RA | 202,266 | C→T | P56S (CCT→TCT) | fabZ → | 3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase |
| RA | 205,045 | C→T | R185C (CGC→TGC) | rnhB → | RNase HII |
| RA | 209,910 | C→T | P78S (CCG→TCG) | ldcC → | lysine decarboxylase 2 |
| RA | 222,052 | G→A | T198T (ACC→ACT) | metN ← | L‑methionine/D‑methionine ABC transporter ATP binding subunit |
| RA | 236,776 | G→A | G237E (GGA→GAA) | dnaQ → | DNA polymerase III subunit epsilon |
| RA | 239,159 | G→A | intergenic (‑423/+260) | ykfM ← / ← yafV | uncharacterized protein YkfM/2‑oxoglutaramate amidase |
| RA | 241,309 | G→A | N665N (AAC→AAT) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 241,648 | G→A | R552R (CGC→CGT) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 242,499 | G→A | L269L (CTG→TTG) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 242,847 | G→A | P153S (CCG→TCG) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 246,272 | G→A | A77A (GCC→GCT) | dinJ ← | antitoxin/DNA‑binding transcriptional repressor DinJ |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| RA | 247,154 | G→A | S148N (AGC→AAC) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| JC JC | 331,730 | IS2 (–) +5 bp | intergenic (+234/‑68) | betT → / → yahV | choline:H(+) symporter/protein YahV |
| RA | 332,716 | G→A | A116T (GCG→ACG) | pdeL → | DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 374,972 | T→C | intergenic (+91/‑487) | mhpE → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 374,974 | A→G | intergenic (+93/‑485) | mhpE → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 374,986 | T→C | intergenic (+105/‑473) | mhpE → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 388,732 | C→T | intergenic (+86/+21) | tauD → / ← hemB | taurine dioxygenase/porphobilinogen synthase |
| RA | 408,799 | C→T | intergenic (+338/‑148) | ppnP → / → ykiD | nucleoside phosphorylase PpnP/protein YkiD |
| RA | 475,920 | C→T | S181F (TCT→TTT) | ybaY → | PF09619 family lipoprotein YbaY |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 480,398 | C→T | G104D (GGT→GAT) | tomB ← | Hha toxicity modulator TomB |
| RA | 526,759 | G→A | A1167T (GCG→ACG) | rhsD → | protein RhsD |
| RA | 567,809 | C→T | C224C (TGC→TGT) | insF3 → | IS3 element protein InsF |
| RA | 590,565 | G→A | S130S (AGC→AGT) | nfrA ← | exopolysaccharide secretion system outer membrane protein NfrA |
| RA | 596,410 | G→A | G271R (GGA→AGA) | cusC → | copper/silver export system outer membrane channel |
| RA | 647,673 | C→T | W121* (TGG→TGA) | citX ← | apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase |
| MC JC | 683,267 | Δ4,584 bp | IS5‑mediated | [hscC]–gltI | [hscC], rihA, gltL, gltK, gltJ, sroC, gltI |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 722,884 | G→A | R511C (CGC→TGC) | kdpD ← | sensor histidine kinase KdpD |
| RA | 734,575 | G→A | intergenic (+473/‑1075) | ybfB → / → ybfC | uncharacterized protein YbfB/uncharacterized protein YbfC |
| RA | 734,857 | C→T | intergenic (+755/‑793) | ybfB → / → ybfC | uncharacterized protein YbfB/uncharacterized protein YbfC |
| RA | 784,488 | G→A | R112R (CGC→CGT) | zitB ← | Zn(2(+))/Cd(2(+))/Ni(2(+))/Cu(2(+)) exporter |
| RA | 804,359 | G→A | G286D (GGC→GAC) | ybhJ → | putative hydratase YbhJ |
| RA | 807,730 | G→A | G60G (GGC→GGT) | ybhB ← | putative kinase inhibitor |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 839,446 | C→T | G696R (GGA→AGA) | fiu ← | iron catecholate outer membrane transporter Fiu |
| RA | 841,518 | C→T | R5H (CGC→CAC) | fiu ← | iron catecholate outer membrane transporter Fiu |
| RA | 844,731 | C→T | E250E (GAG→GAA) | ybiO ← | moderate conductance mechanosensitive channel YbiO |
| RA | 850,443 | G→A | intergenic (+46/‑7) | yliM → / → ompX | protein YliM/outer membrane protein X |
| RA | 850,931 | G→A | G161D (GGC→GAC) | ompX → | outer membrane protein X |
| RA | 866,651 | C→T | Y28Y (TAC→TAT) | iaaA → | isoaspartyl dipeptidase proenzyme |
| RA | 899,762 | C→T | intergenic (+117/+82) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase/L‑arginine ABC transporter periplasmic binding protein |
| RA | 922,086 | C→T | C580C (TGC→TGT) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 923,400 | C→T | A46V (GCG→GTG) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 946,122 | C→T | G84G (GGC→GGT) | ycaD → | putative transporter YcaD |
| RA | 961,394 | C→T | S65F (TCC→TTC) | cmk → | cytidylate kinase |
| RA | 963,617 | C→T | N541N (AAC→AAT) | rpsA → | 30S ribosomal subunit protein S1 |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 974,351 | G→A | L11L (CTG→CTA) | mukF → | chromosome partitioning protein MukF |
| RA | 1,003,511 | G→A | G25S (GGC→AGC) | ycbV → | putative fimbrial protein YcbV |
| RA | 1,007,235 | C→T | W122* (TGG→TGA) | ycbX ← | 6‑N‑hydroxylaminopurine resistance protein |
| RA | 1,038,613 | C→T | L292L (CTA→TTA) | appC → | cytochrome bd‑II subunit 1 |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,042,957 | C→T | Q418Q (CAG→CAA) | etk ← | protein‑tyrosine kinase Etk |
| RA | 1,049,328 | C→T | R2H (CGC→CAC) | gfcB ← | lipoprotein GfcB |
| RA | 1,060,831 | C→T | P526S (CCT→TCT) | torA → | trimethylamine N‑oxide reductase 1 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,077,020 | C→T | G621G (GGG→GGA) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,080,930 | C→T | intergenic (+117/‑1313) | putP → / → efeO | proline:Na(+) symporter/ferrous iron transport system protein EfeO |
| RA | 1,094,037 | C→T | R388C (CGT→TGT) | dgcT → | putative diguanylate cyclase DgcT |
| RA | 1,104,125 | C→T | Q59* (CAG→TAG) | csgB → | curlin, minor subunit |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,118,119 | C→T | D120N (GAT→AAT) | yceI ← | protein YceI |
| RA | 1,122,318 | C→T | G97D (GGC→GAC) | pyrC ← | dihydroorotase |
| RA | 1,128,789 | G→A | L317L (TTG→TTA) | murJ → | lipid II flippase MurJ |
| RA | 1,130,025 | G→A | A35V (GCC→GTC) | flgM ← | anti‑sigma factor for FliA (sigma(28)) |
| RA | 1,134,466 | C→T | A222V (GCC→GTC) | flgF → | flagellar basal‑body rod protein FlgF |
| RA | 1,153,622 | C→T | A108V (GCT→GTT) | pabC → | aminodeoxychorismate lyase |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,181,346 | C→T | G127D (GGC→GAC) | ymfA ← | putative inner membrane protein YmfA |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| JC JC | 1,286,488 | IS1 (–) +9 bp | coding (640‑648/678 nt) | narI → | nitrate reductase A subunit gamma |
| RA | 1,293,531 | C→T | A2V (GCA→GTA) | tdk → | thymidine/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,301,788 | G→T | E203* (GAA→TAA) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,313,422 | G→A | A81V (GCT→GTT) | yciC ← | putative inner membrane protein |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,340,778 | C→T | T74M (ACG→ATG) | lapB → | lipopolysaccharide assembly protein B |
| RA | 1,342,801 | C→T | C48C (TGC→TGT) | yciH → | putative translation factor |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,361,174 | C→T | L19F (CTT→TTT) | puuD → | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,364,324 | C→T | C31C (TGC→TGT) | puuB → | gamma‑glutamylputrescine oxidase |
| RA | 1,395,234 | C→T | G230E (GGA→GAA) | ynaI ← | small conductance mechanosensitive channel YnaI |
| RA | 1,408,877 | C→T | V276V (GTC→GTT) | zntB → | Zn(2(+)):H(+) symporter |
| RA | 1,437,952 | G→A | L945L (CTG→TTG) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,438,813 | C→T | A658T (GCG→ACG) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,439,116 | G→A | R557C (CGT→TGT) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,441,990 | G→A | S285F (TCT→TTT) | ldhA ← | D‑lactate dehydrogenase |
| RA | 1,443,674 | G→A | G208G (GGG→GGA) | ydbH → | putative phospholipid transport factor YdbH |
| RA | 1,446,567 | C→T | L239L (TTG→TTA) | feaR ← | DNA‑binding transcriptional activator FeaR |
| RA | 1,511,403 | G→A | R467R (CGG→CGA) | ydcR → | fused putative DNA‑binding transcriptional regulator/putative aminotransferase YdcR |
| RA | 1,513,915 | C→T | L29L (CTG→TTG) | ydcU → | putative ABC transporter membrane subunit YdcU |
| RA | 1,513,927 | C→T | L33L (CTG→TTG) | ydcU → | putative ABC transporter membrane subunit YdcU |
| RA | 1,567,494 | G→A | intergenic (‑275/+10) | yddY ← / ← digH | protein YddY/divisome localized glycosyl hydrolase |
| RA | 1,568,454 | G→A | P124S (CCG→TCG) | digH ← | divisome localized glycosyl hydrolase |
| RA | 1,570,361 | G→A | V43V (GTC→GTT) | gadC ← | L‑glutamate:4‑aminobutyrate antiporter |
| RA | 1,581,258 | G→A | P423S (CCC→TCC) | ydeN ← | putative sulfatase YdeN |
| RA | 1,582,247 | G→A | T93I (ACC→ATC) | ydeN ← | putative sulfatase YdeN |
| RA | 1,588,678 | G→A | N54N (AAC→AAT) | ydeS ← | putative fimbrial protein YdeS |
| RA | 1,590,339 | G→A | intergenic (‑338/+515) | ydeT ← / ← hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA |
| RA | 1,615,674 | G→A | G291R (GGA→AGA) | yneJ → | putative DNA‑binding transcriptional regulator YneJ |
| RA | 1,615,856 | G→A | D32N (GAT→AAT) | yneK → | protein YneK |
| RA | 1,618,833 | C→T | A26T (GCG→ACG) | marC ← | inner membrane protein MarC |
| RA | 1,623,146 | G→A | N235N (AAC→AAT) | dgcZ ← | diguanylate cyclase DgcZ |
| RA | 1,623,788 | G→A | A21A (GCC→GCT) | dgcZ ← | diguanylate cyclase DgcZ |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,655,010 | G→A | A44A (GCC→GCT) | rspA ← | mandelate racemase/muconate lactonizing enzyme family protein RspA |
| RA | 1,711,083 | C→T | L86L (CTG→TTG) | rsxE → | SoxR [2Fe‑2S] reducing system protein RsxE |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,728,390 | G→A | R15H (CGT→CAT) | rnt → | ribonuclease T |
| RA | 1,735,948 | C→T | L191F (CTC→TTC) | sodB → | superoxide dismutase (Fe) |
| RA | 1,741,364 | C→T | intergenic (+242/‑49) | punC → / → cfa | purine nucleoside transporter PunC/cyclopropane fatty acyl phospholipid synthase |
| RA | 1,744,269 | C→T | V271V (GTC→GTT) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,747,368 | C→T | H80Y (CAT→TAT) | ydhS → | FAD/NAD(P) binding domain‑containing protein YdhS |
| RA | 1,755,663 | C→T | F56F (TTC→TTT) | ynhH → | protein YnhH |
| RA | 1,755,879 | C→T | A61V (GCC→GTC) | pykF → | pyruvate kinase 1 |
| RA | 1,757,363 | C→T | intergenic (+253/‑58) | pykF → / → lpp | pyruvate kinase 1/murein lipoprotein |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| JC JC | 1,785,887 | IS30 (–) +2 bp | coding (1225‑1226/2379 nt) | ppsA ← | phosphoenolpyruvate synthetase |
| RA | 1,819,438 | G→A | P4S (CCA→TCA) | chbR ← | ChbR |
| RA | 1,867,987 | G→A | T360T (ACG→ACA) | yeaG → | protein kinase YeaG |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,886,565 | C→T | R241C (CGT→TGT) | yeaX → | carnitine monooxygenase subunit YeaX |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,899,926 | G→A | Q500Q (CAG→CAA) | pdeD → | putative c‑di‑GMP phosphodiesterase PdeD |
| RA | 1,913,994 | C→T | A275T (GCT→ACT) | prc ← | tail‑specific protease |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 1,998,888 | G→A | T198I (ACT→ATT) | dcyD ← | D‑cysteine desulfhydrase |
| RA | 2,022,111 | C→T | P81P (CCC→CCT) | fliP → | flagellar biosynthesis protein FliP |
| RA | 2,023,126 | C→T | I78I (ATC→ATT) | fliR → | flagellar biosynthesis protein FliR |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,058,789 | C→T | G353E (GGG→GAG) | yeeO ← | FMN/FAD exporter |
| RA | 2,082,218 | C→T | L110L (TTG→TTA) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase DacD |
| RA | 2,122,019 | C→T | E321K (GAA→AAA) | cpsG ← | phosphomannomutase |
| RA | 2,123,708 | C→T | V271V (GTG→GTA) | cpsB ← | mannose‑1‑phosphate guanylyltransferase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,175,730 | Δ1 bp | coding (592/1263 nt) | gatZ ← | putative tagatose‑1,6‑bisphosphate aldolase 2 chaperone |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,203,339 | C→T | R1021C (CGT→TGT) | yehI → | DUF4132 domain‑containing protein YehI |
| RA | 2,217,465 | C→T | A365T (GCG→ACG) | yehY ← | glycine betaine ABC transporter membrane subunit YehY |
| RA | 2,222,003 | C→T | intergenic (‑14/‑182) | bglX ← / → dld | beta‑D‑glucoside glucohydrolase, periplasmic/quinone‑dependent D‑lactate dehydrogenase |
| RA | 2,233,113 | G→A | S79N (AGC→AAC) | sanA → | DUF218 domain‑containing protein SanA |
| RA | 2,234,387 | C→T | P119S (CCC→TCC) | preT → | dihydropyrimidine dehydrogenase (NAD(+)) subunit PreT |
| RA | 2,249,536 | G→A | A28V (GCG→GTG) | yeiE ← | DNA‑binding transcriptional regulator YeiE |
| RA | 2,255,996 | C→T | F214F (TTC→TTT) | yeiL → | DNA‑binding transcriptional activator YeiL |
| RA | 2,268,651 | C→T | P275S (CCC→TCC) | yeiR → | zinc‑binding GTPase YeiR |
| RA | 2,272,487 | C→T | H42Y (CAT→TAT) | yejA → | putative oligopeptide ABC transporter periplasmic binding protein YejA |
| RA | 2,288,531 | C→T | pseudogene (384/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,291,838 | C→T | A191A (GCG→GCA) | ccmH ← | holocytochrome c synthase CcmH component |
| RA | 2,318,488 | C→T | A463A (GCG→GCA) | rcsC ← | histidine kinase RcsC |
| RA | 2,333,436 | C→T | intergenic (‑3639/+900) | yfaQ ← / ← yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| RA | 2,376,046 | G→A | Y258Y (TAC→TAT) | menB ← | 1,4‑dihydroxy‑2‑naphthoyl‑CoA synthase |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,412,154 | G→A | C147C (TGC→TGT) | yfbU ← | PF03887 family protein YfbU |
| RA | 2,425,264 | C→T | R218H (CGC→CAC) | hisQ ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisQ |
| RA | 2,468,235 | C→T | P8S (CCT→TCT) | yfdH → | bactoprenol glucosyl transferase |
| RA | 2,468,735 | C→T | N174N (AAC→AAT) | yfdH → | bactoprenol glucosyl transferase |
| RA | 2,483,613 | C→T | intergenic (‑274/‑116) | emrK ← / → evgL | tripartite efflux pump membrane fusion protein EmrK/protein EvgL |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,492,285 | C→T | A324T (GCG→ACG) | frc ← | formyl‑CoA transferase |
| RA | 2,493,171 | C→T | W28* (TGG→TGA) | frc ← | formyl‑CoA transferase |
| RA | 2,522,277 | G→A | G67G (GGC→GGT) | xapR ← | DNA‑binding transcriptional activator XapR |
| RA | 2,555,192 | G→A | intergenic (‑10/+36) | eutR ← / ← eutK | putative DNA‑binding transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,574,513 | C→T | W164* (TGG→TAG) | eutQ ← | putative ethanolamine utilization acetate kinase EutQ |
| RA | 2,578,664 | C→T | intergenic (‑287/‑2) | maeB ← / → talA | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+))/transaldolase A |
| JC JC | 2,757,507 | IS5 (–) +4 bp | intergenic (+107/+134) | intA → / ← yfjH | integrase IntA/uncharacterized protein YfjH |
| RA | 2,760,347 | T→C | S455P (TCA→CCA) | yfjI → | DUF3987 domain‑containing protein YfjI |
| RA | 2,791,765 | C→T | R165C (CGC→TGC) | gabD → | succinate‑semialdehyde dehydrogenase (NADP(+)) GabD |
| RA | 2,821,231 | G→A | R261C (CGC→TGC) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| RA | 2,837,466 | C→T | intergenic (‑41/+112) | hypF ← / ← hydN | carbamoyl‑‑[HypE] ligase/putative electron transport protein HydN |
| RA | 2,850,295 | G→A | S47S (AGC→AGT) | hycA ← | regulator of the transcriptional regulator FhlA |
| RA | 2,893,820 | G→A | Q388Q (CAG→CAA) | ygcN → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 2,908,575 | G→A | T364T (ACC→ACT) | pyrG ← | CTP synthetase |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,935,250 | G→A | C339Y (TGC→TAC) | fucP → | L‑fucose:H(+) symporter |
| RA | 2,947,250 | G→A | intergenic (‑72/‑137) | mltA ← / → metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met |
| RA | 2,959,890 | C→T | A847T (GCA→ACA) | recC ← | exodeoxyribonuclease V subunit RecC |
| RA | 2,962,432 | G→A | intergenic (‑4/+9) | recC ← / ← ppdC | exodeoxyribonuclease V subunit RecC/prepilin‑type N‑terminal cleavage/methylation domain‑containing protein PpdC |
| RA | 2,995,567 | G→A | intergenic (+1711/+805) | ygeI → / ← insD4 | protein YgeI/IS2 insertion element protein InsB |
| RA | 3,081,159 | C→T | M159I (ATG→ATA) | tktA ← | transketolase 1 |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,157,144 | C→T | A174A (GCC→GCT) | dkgA → | methylglyoxal reductase DkgA |
| RA | 3,167,226 | G→A | L165F (CTT→TTT) | ygiS ← | putative deoxycholate binding periplasmic protein |
| RA | 3,197,524 | G→A | F706F (TTC→TTT) | glnE ← | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase |
| RA | 3,197,983 | T→C | K553K (AAA→AAG) | glnE ← | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase |
| JC JC | 3,259,884 | IS30 (–) +2 bp | coding (226‑227/390 nt) | tdcF ← | putative enamine/imine deaminase |
| RA | 3,324,920 | C→T | intergenic (‑9/+81) | folP ← / ← ftsH | dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,338,620 | G→A | A210V (GCC→GTC) | mlaE ← | intermembrane phospholipid transport system, integral membrane subunit MlaE |
| RA | 3,345,023 | G→A | D103N (GAC→AAC) | rpoN → | RNA polymerase sigma factor RpoN |
| RA | 3,354,678 | G→A | intergenic (‑628/‑47) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,372,814 | G→A | L255L (CTG→TTG) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,390,213 | G→A | A232T (GCG→ACG) | aaeR → | DNA‑binding transcriptional activator AaeR |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,469,141 | G→A | S238F (TCT→TTT) | chiA ← | endochitinase |
| RA | 3,513,537 | G→A | D34D (GAC→GAT) | trpS ← | tryptophan‑‑tRNA ligase |
| JC JC | 3,541,736 | IS30 (+) +2 bp | coding (1330‑1331/2322 nt) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| JC JC | 3,637,435 | IS30 (–) +2 bp | intergenic (‑25/‑206) | yhiN ← / → pitA | putative oxidoreductase YhiN/metal phosphate:H(+) symporter PitA |
| JC JC | 3,639,612 | IS2 (–) +5 bp | coding (105‑109/336 nt) | uspB ← | universal stress protein B |
| RA | 3,656,868 | C→T | intergenic (‑128/‑127) | hdeA ← / → hdeD | periplasmic acid stress chaperone HdeA/acid‑resistance membrane protein |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,687,875 | C→T | S433S (TCG→TCA) | bcsC ← | cellulose synthase outer membrane channel |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| MC JC | 3,708,467 | Δ168 bp | [proK] | [proK] | |
| RA | 3,721,168 | G→A | K163K (AAG→AAA) | insJ → | insertion element IS150 protein InsA |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,751,319 | G→A | L184L (CTG→TTG) | yiaT ← | outer membrane protein YiaT |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,781,142 | G→A | intergenic (+125/‑73) | lldD → / → trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| RA | 3,797,305 | G→A | V120I (GTT→ATT) | waaL → | O‑antigen ligase |
| RA | 3,801,210 | G→A | H264Y (CAT→TAT) | waaJ ← | UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase |
| RA | 3,803,627 | G→A | P171S (CCC→TCC) | waaB ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,818,950 | G→A | R26H (CGC→CAC) | yicG → | PF03458 family inner membrane protein YicG |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,840,891 | G→A | A283A (GCC→GCT) | nepI ← | purine ribonucleoside exporter |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,897,056 | G→A | A95T (GCG→ACG) | yieH → | 6‑phosphogluconate phosphatase |
| RA | 3,902,040 | G→A | P61S (CCA→TCA) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
| RA | 3,931,729 | G→A | Q138Q (CAG→CAA) | kup → | K(+):H(+) symporter Kup |
| RA | 3,936,638 | G→A | E121K (GAA→AAA) | rbsB → | ribose ABC transporter periplasmic binding protein |
| RA | 3,954,796 | G→A | G440D (GGC→GAC) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 3,958,996 | C→T | P343S (CCG→TCG) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 3,974,933 | G→A | R156Q (CGG→CAG) | rffC → | RffC |
| RA | 3,978,425 | G→A | D301N (GAT→AAT) | wecF → | TDP‑N‑acetylfucosamine:lipid II N‑acetylfucosaminyltransferase |
| RA | 3,984,686 | G→A | S441F (TCC→TTC) | aslA ← | putative sulfatase AslA |
| RA | 3,991,705 | G→A | E185K (GAA→AAA) | cyaA → | adenylate cyclase |
| RA | 3,991,868 | C→T | S239F (TCT→TTT) | cyaA → | adenylate cyclase |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,000,026 | G→A | G682S (GGT→AGT) | uvrD → | DNA helicase II |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,013,387 | C→T | A112V (GCA→GTA) | metE → | cobalamin‑independent homocysteine transmethylase |
| RA | 4,014,791 | C→T | A580V (GCG→GTG) | metE → | cobalamin‑independent homocysteine transmethylase |
| RA | 4,037,203 | C→T | noncoding (63/77 nt) | ileT → | tRNA‑Ile |
| RA | 4,073,454 | G→A | L40L (CTG→TTG) | yihU ← | 3‑sulfolactaldehyde reductase |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,093,186 | G→A | P85S (CCC→TCC) | rhaM ← | L‑rhamnose mutarotase |
| RA | 4,094,329 | G→A | intergenic (‑57/+394) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,100,969 | G→A | V54I (GTT→ATT) | sodA → | superoxide dismutase (Mn) |
| RA | 4,107,225 | G→A | D253N (GAC→AAC) | fieF → | Zn(2(+))/Fe(2(+))/Cd(2(+)) exporter |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,116,633 | G→A | T197I (ACC→ATC) | glpK ← | glycerol kinase |
| RA | 4,116,905 | G→A | C106C (TGC→TGT) | glpK ← | glycerol kinase |
| RA | 4,127,189 | C→T | R59R (CGC→CGT) | rpmE → | 50S ribosomal subunit protein L31 |
| RA | 4,134,368 | C→T | T178T (ACC→ACT) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,152,948 | C→T | A51T (GCT→ACT) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,168,480 | T→C | intergenic (+33/‑161) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA |
| RA | 4,179,088 | C→T | G70G (GGC→GGT) | rplA → | 50S ribosomal subunit protein L1 |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,198,552 | C→T | R279R (CGC→CGT) | hemE → | uroporphyrinogen decarboxylase |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,215,489 | G→A | Q4Q (CAG→CAA) | aceB → | malate synthase A |
| RA | 4,220,830 | G→A | A553V (GCC→GTC) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,223,156 | G→A | A158V (GCT→GTT) | iclR ← | DNA‑binding transcriptional repressor IclR |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,225,937 | G→A | V704I (GTC→ATC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,235,646 | G→A | intergenic (+239/‑260) | pgi → / → yjbE | glucose‑6‑phosphate isomerase/uncharacterized protein YjbE |
| RA | 4,245,100 | G→A | intergenic (‑25/+129) | malF ← / ← malE | maltose ABC transporter membrane subunit MalF/maltose ABC transporter periplasmic binding protein |
| RA | 4,250,215 | C→T | P221L (CCT→CTT) | malM → | maltose regulon periplasmic protein |
| RA | 4,266,517 | G→A | E246K (GAG→AAG) | alr → | alanine racemase 1 |
| RA | 4,271,267 | G→A | Q869* (CAG→TAG) | uvrA ← | UvrABC excision nuclease subunit A |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,307,123 | G→A | A226V (GCG→GTG) | alsK ← | D‑allose kinase |
| RA | 4,317,383 | C→T | L171L (CTG→CTA) | phnL ← | methylphosphonate degradation complex subunit PhnL |
| RA | 4,317,851 | C→T | Q15Q (CAG→CAA) | phnL ← | methylphosphonate degradation complex subunit PhnL |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,336,319 | C→T | C238Y (TGC→TAC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,340,478 | G→A | T15I (ACC→ATC) | adiA ← | arginine decarboxylase, degradative |
| RA | 4,350,035 | C→T | R543K (AGA→AAA) | dcuS ← | sensor histidine kinase DcuS |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,394,904 | C→T | A280V (GCT→GTT) | nnr → | NAD(P)HX epimerase/NAD(P)HX dehydratase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,401,601 | C→T | I310I (ATC→ATT) | hflX → | ribosome rescue factor HflX |
| RA | 4,415,033 | C→T | R253R (CGC→CGT) | aidB → | putative acyl‑CoA dehydrogenase AidB |
| RA | 4,425,587 | G→A | G23E (GGA→GAA) | priB → | primosomal replication protein N |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,458,044 | C→T | A29V (GCC→GTC) | tldE → | metalloprotease subunit TldE |
| RA | 4,460,372 | C→T | intergenic (‑8/+150) | nrdG ← / ← nrdD | anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,463,287 | C→T | G475S (GGC→AGC) | treC ← | trehalose‑6‑phosphate hydrolase |
| RA | 4,465,986 | C→T | Q65Q (CAG→CAA) | treB ← | trehalose‑specific PTS enzyme IIBC component |
| RA | 4,466,307 | G→A | L314L (CTG→TTG) | treR ← | DNA‑binding transcriptional repressor TreR |
| RA | 4,486,647 | C→T | L144L (CTG→TTG) | lptF → | lipopolysaccharide transport system protein LptF |
| RA | 4,489,184 | C→T | G294S (GGC→AGC) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,496,010 | C→T | G67E (GGG→GAG) | ahr ← | NADPH‑dependent aldehyde reductase Ahr |
| RA | 4,502,076 | G→A | intergenic (+487/+27) | yjgZ → / ← insG | uncharacterized protein YjgZ/IS4 family putative transposase |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,512,933 | C→T | L159L (CTG→CTA) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| RA | 4,521,147 | C→T | G292R (GGG→AGG) | yjhF ← | putative transporter YjhF |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| JC JC | 4,539,115 | IS5 (–) +4 bp | coding (384‑387/717 nt) | nanC ← | N‑acetylneuraminate outer membrane channel |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,548,466 | C→T | A61V (GCC→GTC) | fimG → | type 1 fimbriae minor subunit FimG |
| RA | 4,548,824 | C→T | T6I (ACC→ATC) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| RA | 4,551,386 | C→T | intergenic (‑90/‑250) | gntP ← / → uxuA | fructuronate transporter/D‑mannonate dehydratase |
| RA | 4,554,575 | C→T | intergenic (+214/‑1) | uxuB → / → uxuR | D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR |
| RA | 4,558,283 | C→T | D3N (GAC→AAC) | hypT ← | DNA‑binding transcriptional dual regulator HypT |
| RA | 4,563,755 | C→T | W57* (TGG→TGA) | ytiA ← | uncharacterized protein YtiA |
| RA | 4,607,607 | C→T | D32N (GAC→AAC) | rsmC ← | 16S rRNA m(2)G1207 methyltransferase |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| JC JC | 4,640,418 | IS30 (–) +2 bp | coding (17‑18/141 nt) | yjjY → | uncharacterized protein YjjY |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 736704 | 737223 | 520 | 41 [40] | [40] 42 | ybfQ/ybfD | inactive transposase YbfQ/H repeat‑associated putative transposase YbfD |
| * | * | ÷ | NC_000913 | 1196277 | 1211459 | 15183 | 42 [40] | [38] 43 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 127 [0] | [2] 137 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 2726233–2729242 | 2729426 | 185–3194 | 41 [40] | [40] 42 | rrlG–[gltW] | rrlG,[gltW] |
| * | * | ÷ | NC_000913 | 3423773–3424234 | 3426628–3424239 | 6–2856 | 41 [40] | [40] 41 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3943770–3945357 | 3945357 | 1–1588 | 41 [38] | [40] 41 | rrlC | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 4035337–4036916 | 4036916 | 1–1580 | 42 [40] | [39] 42 | [rrsA] | [rrsA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 737973 = | 151 (1.300) | 88 (0.830) +25 bp |
56/548 | 0.6 | 39.9% | intergenic (+1274/‑119) | ybfQ/ybfD | inactive transposase YbfQ/H repeat‑associated putative transposase YbfD |
| ? | NC_000913 | = 3624614 | 138 (1.190) | coding (237/1137 nt) | yhhI | putative transposase | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 127 (1.090) | 78/598 | 0.2 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1469296 = | NA (NA) | 37 (0.320) | 33/592 | 2.8 | 46.2% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 1910137 | 43 (0.370) | intergenic (‑38/‑139) | kdgR/yebQ | DNA‑binding transcriptional repressor KdgR/putative transporter YebQ | |||||
| * | ? | NC_000913 | = 1470516 | NA (NA) | 70 (0.610) | 54/596 | 1.0 | 61.4% | noncoding (1221/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 1910136 = | 44 (0.380) | intergenic (‑37/‑140) | kdgR/yebQ | DNA‑binding transcriptional repressor KdgR/putative transporter YebQ | |||||
| * | ? | NC_000913 | 1979271 = | 2 (0.020) | 135 (1.160) | 91/598 | 0.1 | 98.5% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||