mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 12,333 | G→A | Q57Q (CAG→CAA) | dnaK → | chaperone protein DnaK |
| RA | 31,329 | Δ1 bp | coding (513/3222 nt) | carB → | carbamoyl‑phosphate synthetase large subunit |
| RA | 108,585 | C→T | R103C (CGT→TGT) | secA → | protein translocation ATPase |
| RA | 114,533 | Δ1 bp | coding (1192/1203 nt) | hofC ← | inner membrane protein HofC |
| RA | 139,207 | Δ1 bp | coding (2019/2391 nt) | gcd ← | quinoprotein glucose dehydrogenase |
| RA | 181,501 | Δ1 bp | coding (618/1425 nt) | degP → | periplasmic serine endoprotease DegP |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC | 279,931 | Δ11,471 bp | between IS1 | yagB–insA3 | yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, ykgS, insB3, insA3 |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 464,814 | C→T | intergenic (+14/+38) | fadM → / ← queC | long‑chain acyl‑CoA thioesterase FadM/7‑cyano‑7‑deazaguanine synthase |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 566,158 | G→A | intergenic (‑180/‑526) | intD ← / → renD | putative integrase/protein RenD |
| RA | 642,647 | G→T | G187V (GGT→GTT) | ybdR → | putative Zn(2(+))‑dependent alcohol dehydrogenase YbdR |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 700,877 | Δ1 bp | coding (718/1221 nt) | nagC ← | DNA‑binding transcriptional dual regulator NagC |
| JC JC | 715,784 | IS1 (+) +9 bp | coding (373‑381/495 nt) | ybfP → | lipoprotein YbfP |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 811,545 | C→T | A8A (GCC→GCT) | bioC → | malonyl‑acyl carrier protein methyltransferase |
| RA | 938,731 | C→G | A246A (GCC→GCG) | rarA → | replication‑associated recombination protein A |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,158,449 | C→A | A194E (GCG→GAG) | ptsG → | glucose‑specific PTS enzyme IIBC component |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,278,510 | C→T | A185V (GCT→GTT) | narK → | nitrate:nitrite antiporter NarK |
| RA | 1,283,305 | Δ1 bp | coding (3442/3744 nt) | narG → | nitrate reductase A subunit alpha |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,311,535 | G→A | V149V (GTG→GTA) | tonB → | Ton complex subunit TonB |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,374,009 | G→A | G263E (GGA→GAA) | ycjO → | putative ABC transporter membrane subunit YcjO |
| RA | 1,382,140 | G→A | R65K (AGA→AAA) | ompG → | outer membrane porin G |
| RA | 1,382,877 | G→A | intergenic (+25/+86) | ompG → / ← ycjW | outer membrane porin G/DNA‑binding transcriptional repressor YcjW |
| MC JC | 1,382,890 | Δ13,154 bp | IS5‑mediated | ycjW–ynaI | ycjW, ycjX, ycjF, tyrR, tpx, ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI |
| RA | 1,403,797 | C→T | A257T (GCA→ACA) | abgA ← | p‑aminobenzoyl‑glutamate hydrolase subunit A |
| RA | 1,411,076 | C→T | W291* (TGG→TGA) | ttcA ← | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| RA | 1,416,072 | C→T | E439K (GAA→AAA) | recE ← | exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,956,597 | G→T | A137A (GCC→GCA) | torZ ← | trimethylamine N‑oxide reductase 2 |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC JC | 2,176,996 | IS1 (+) +9 bp | coding (201‑209/855 nt) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,258,149 | T→G | K73N (AAA→AAC) | psuG ← | pseudouridine‑5'‑phosphate glycosidase |
| RA | 2,395,490 | G→A | P136L (CCT→CTT) | nuoJ ← | NADH:quinone oxidoreductase subunit J |
| RA | 2,506,758 | Δ1 bp | coding (1137/1248 nt) | fryC ← | putative PTS enzyme IIC component FryC |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,622,130 | G→A | E312K (GAA→AAA) | purM → | phosphoribosylformylglycinamide cyclo‑ligase |
| RA | 2,671,399 | G→A | G59S (GGT→AGT) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| RA | 2,729,833 | G→A | noncoding (1325/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 2,733,191 | G→A | A328V (GCG→GTG) A328V (GCG→GTG) |
clpB ← clpB ← |
chaperone protein ClpB chaperone protein ClpB |
| RA | 2,740,421 | G→A | P244S (CCT→TCT) | aroF ← | 3‑deoxy‑7‑phosphoheptulonate synthase, Tyr‑sensitive |
| RA | 2,741,238 | C→T | intergenic (‑88/‑122) | aroF ← / → yfiL | 3‑deoxy‑7‑phosphoheptulonate synthase, Tyr‑sensitive/DUF2799 domain‑containing lipoprotein YfiL |
| RA | 2,743,535 | G→A | E385K (GAA→AAA) | dgcN → | diguanylate cyclase DgcN |
| RA | 2,744,122 | G→A | intergenic (+15/+61) | yfiB → / ← rplS | lipoprotein YfiB/50S ribosomal subunit protein L19 |
| RA | 2,745,456 | G→A | L155F (CTC→TTC) | rimM ← | ribosome maturation factor RimM |
| RA | 2,770,950 | G→A | M90I (ATG→ATA) | yfjS → | inner membrane lipoprotein YfjS |
| RA | 2,773,724 | G→A | G136E (GGG→GAG) | yfjW → | uncharacterized protein YfjW |
| RA | 2,786,308 | G→A | intergenic (‑471/‑2677) | ileY ← / → glaH | tRNA‑Ile/glutarate dioxygenase GlaH |
| RA | 2,797,193 | G→A | intergenic (‑165/‑18) | yqaE ← / → ygaV | Pmp3 family protein YqaE/putative DNA‑binding transcriptional regulator YgaV |
| RA | 2,800,319 | G→A | R58R (AGG→AGA) | ygaM → | DUF883 domain‑containing protein YgaM |
| RA | 2,802,292 | G→A | E315E (GAG→GAA) | nrdE → | ribonucleoside‑diphosphate reductase 2 subunit alpha |
| RA | 2,809,423 | G→A | intergenic (+1299/‑194) | proX → / → ygaZ | glycine betaine ABC transporter periplasmic binding protein ProX/L‑valine exporter, YgaZ component |
| RA | 2,815,879 | G→A | Y187Y (TAC→TAT) | gshA ← | glutamate‑‑cysteine ligase |
| RA | 2,817,663 | G→A | intergenic (‑160/+121) | yqaB ← / ← argQ | fructose‑1‑phosphate phosphatase YqaB/tRNA‑Arg |
| RA | 2,819,003 | G→A | Y48Y (TAC→TAT) | csrA ← | carbon storage regulator |
| RA | 2,836,651 | C→T | G259S (GGT→AGT) | hypF ← | carbamoyl‑‑[HypE] ligase |
| RA | 2,838,036 | C→T | V24I (GTT→ATT) | hydN ← | putative electron transport protein HydN |
| RA | 2,840,299 | C→T | A259V (GCC→GTC) | ascF → | beta‑glucoside specific PTS enzyme IIBC component |
| RA | 2,840,675 | C→T | R384R (CGC→CGT) | ascF → | beta‑glucoside specific PTS enzyme IIBC component |
| RA | 2,841,186 | C→T | A66V (GCG→GTG) | ascB → | 6‑phospho‑beta‑glucosidase AscB |
| RA | 2,842,902 | C→T | V48I (GTC→ATC) | hycI ← | hydrogenase 3 maturation protease |
| RA | 2,842,994 | C→T | G17D (GGC→GAC) | hycI ← | hydrogenase 3 maturation protease |
| RA | 2,861,422 | G→A | intergenic (‑188/‑8) | ygbI ← / → ygbJ | DNA‑binding transcriptional repressor YgbI/putative L‑threonate dehydrogenase |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,883,742 | Δ1 bp | coding (397/1509 nt) | casA ← | type I‑E CRISPR system Cascade subunit CasA |
| RA | 2,891,920 | C→T | intergenic (‑22/‑294) | cysJ ← / → queD | sulfite reductase, flavoprotein subunit/6‑carboxy‑5,6,7,8‑tetrahydropterin synthase |
| RA | 2,892,300 | C→T | R29R (CGC→CGT) | queD → | 6‑carboxy‑5,6,7,8‑tetrahydropterin synthase |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,922,841 | C→T | Q48Q (CAG→CAA) | yqcA ← | putative flavodoxin YqcA |
| RA | 2,930,934 | C→T | A453A (GCC→GCT) | sdaB → | L‑serine deaminase II |
| RA | 2,965,432 | C→T | E202E (GAG→GAA) | lgt ← | phosphatidylglycerol‑‑prolipoprotein diacylglyceryl transferase |
| MC JC | 3,277,071 | Δ1,715 bp | [prlF]–agaR | [prlF], yhaV, agaR | |
| RA | 3,343,968 | C→T | L9F (CTT→TTT) | lptB → | lipopolysaccharide transport system ATP binding protein LptB |
| RA | 3,356,982 | G→A | G753D (GGT→GAT) | gltB → | glutamate synthase subunit GltB |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,415,631 | C→T | P200L (CCG→CTG) | acrF → | multidrug efflux pump RND permease AcrF |
| RA | 3,418,999 | C→T | intergenic (+388/‑1135) | yhdV → / → yhdX | lipoprotein YhdV/putative ABC transporter membrane subunit YhdX |
| RA | 3,431,771 | G→A | C64C (TGC→TGT) | yrdD ← | putative DNA topoisomerase |
| RA | 3,473,644 | T→C | E146E (GAA→GAG) | rpsG ← | 30S ribosomal subunit protein S7 |
| JC JC | 3,552,921 | IS5 (+) +4 bp | intergenic (‑448/‑161) | malP ← / → malT | maltodextrin phosphorylase/DNA‑binding transcriptional activator MalT |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,610,101 | G→A | K49K (AAG→AAA) | dcrB → | periplasmic bacteriophage sensitivity protein DcrB |
| RA | 3,610,529 | G→A | A402V (GCC→GTC) | yhhS ← | putative transporter YhhS |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| JC JC | 3,890,222 | IS5 (+) +4 bp | intergenic (+77/‑11) | tnaA → / → tnaB | tryptophanase/tryptophan:H(+) symporter TnaB |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 4,078,836 | G→A | intergenic (+398/‑455) | fabY → / → yiiE | putative fatty acid biosynthesis enzyme FabY/putative DNA‑binding transcriptional regulator YiiE |
| RA | 4,080,789 | G→A | S147F (TCT→TTT) | fdhE ← | formate dehydrogenase formation protein |
| RA | 4,090,389 | G→A | G179G (GGC→GGT) | frvX ← | peptidase M42 family protein FrvX |
| RA | 4,097,124 | C→T | G109S (GGC→AGC) | rhaB ← | rhamnulokinase |
| RA | 4,098,401 | C→T | R222R (CGC→CGT) | rhaS → | DNA‑binding transcriptional activator RhaS |
| RA | 4,102,797 | G→A | intergenic (+124/‑25) | kdgT → / → yiiM | 2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter/6‑hydroxyaminopurine reductase |
| RA | 4,105,823 | C→T | R2C (CGC→TGC) | cpxP → | periplasmic protein CpxP |
| RA | 4,110,303 | C→T | S125F (TCT→TTT) | cdh → | CDP‑diacylglycerol diphosphatase |
| RA | 4,112,152 | C→T | A21A (GCG→GCA) | yiiQ ← | DUF1454 domain‑containing protein YiiQ |
| RA | 4,122,991 | C→T | E117K (GAA→AAA) | ftsN ← | cell division protein FtsN |
| RA | 4,126,096 | C→T | E239K (GAA→AAA) | priA ← | primosomal protein N' |
| RA | 4,126,312 | C→T | A167T (GCG→ACG) | priA ← | primosomal protein N' |
| RA | 4,128,813 | Δ2 bp | coding (142‑143/1161 nt) | metB → | O‑succinylhomoserine(thiol)‑lyase/O‑ succinylhomoserine lyase |
| RA | 4,129,437 | C→T | Q256* (CAG→TAG) | metB → | O‑succinylhomoserine(thiol)‑lyase/O‑ succinylhomoserine lyase |
| RA | 4,134,230 | C→T | S132S (TCC→TCT) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,134,248 | C→T | S138S (AGC→AGT) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,142,785 | C→T | L86L (CTG→TTG) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,146,943 | C→T | A229V (GCG→GTG) | pflC → | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| RA | 4,157,998 | G→A | E383E (GAG→GAA) | argH → | argininosuccinate lyase |
| RA | 4,179,828 | G→A | intergenic (+245/‑168) | rplA → / → rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| RA | 4,200,629 | C→T | L22L (CTG→TTG) | yjaH → | DUF1481 domain‑containing protein YjaH |
| RA | 4,201,188 | C→T | P208L (CCC→CTC) | yjaH → | DUF1481 domain‑containing protein YjaH |
| RA | 4,202,144 | C→T | H73H (CAC→CAT) | zraS → | sensor histidine kinase ZraS |
| RA | 4,213,035 | G→A | intergenic (+89/‑5) | rrlE → / → rrfE | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,276,437 | C→T | P323S (CCG→TCG) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,319,104 | G→T | A168D (GCC→GAC) | phnJ ← | carbon‑phosphorus lyase core complex subunit PhnJ |
| RA | 4,359,314 | G→A | Q240* (CAG→TAG) | cadB ← | lysine:cadaverine antiporter |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,417,013 | G→T | G21V (GGG→GTG) | yjfP → | carboxylesterase |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,429,860 | A→T | intergenic (+305/‑4) | fklB → / → cycA | peptidyl‑prolyl cis‑trans isomerase FklB/D‑serine/alanine/glycine/:H(+)symporter |
| RA | 4,436,956 | 2 bp→TT | coding (202‑203/741 nt) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,577,064 | C→T | G299R (GGG→AGG) | mcrC ← | Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit |
| RA | 4,618,454 | C→T | H76Y (CAT→TAT) | deoA → | thymidine phosphorylase |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423810–3424233 | 3424502–3424239 | 7–693 | 36 [35] | [35] 36 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4038927–4039384 | 4040414–4039392 | 9–1488 | 36 [35] | [34] 39 | rrlA | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 4166482–4168219 | 4171483–4168498 | 280–5002 | 36 [32] | [35] 36 | rrsB–[rrlB] | rrsB,gltT,[rrlB] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1094245 = | NA (NA) | 51 (0.500) | 42/598 | 1.4 | 32.9% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 1578039 = | 104 (1.020) | coding (1304/1686 nt) | yddA | ABC transporter family protein YddA | |||||
| * | ? | NC_000913 | = 1095502 | NA (NA) | 43 (0.420) | 38/598 | 1.7 | 28.9% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 1578041 | 106 (1.040) | coding (1302/1686 nt) | yddA | ABC transporter family protein YddA | |||||
| * | ? | NC_000913 | 1207790 = | 72 (0.700) | 37 (0.380) | 28/566 | 2.6 | 34.2% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 74 (0.760) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 70 (0.680) | 40 (0.410) | 33/566 | 2.0 | 36.3% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 74 (0.760) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 3 (0.030) | 156 (1.550) | 94/590 | 0.0 | 99.1% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1303840 | 38 (0.370) | 65 (0.660) | 44/578 | 1.1 | 64.4% | coding (7/909 nt) | oppC | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppC |
| ? | NC_000913 | 1304051 = | 35 (0.350) | coding (218/909 nt) | oppC | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppC | |||||
| * | ? | NC_000913 | 1399590 = | 115 (1.120) | 37 (0.360) | 33/598 | 2.2 | 24.3% | intergenic (‑64/+131) | fnr/ogt | DNA‑binding transcriptional dual regulator FNR/methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1596405 = | 104 (1.020) | 37 (0.360) | 30/598 | 2.6 | 26.2% | intergenic (‑3963/+2212) | hipB/lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| ? | NC_000913 | = 2070271 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1596409 | 103 (1.010) | 35 (0.340) | 31/598 | 2.4 | 25.4% | intergenic (‑3967/+2208) | hipB/lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| ? | NC_000913 | = 1651548 | NA (NA) | noncoding (706/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1743496 = | 83 (0.810) | 42 (0.410) | 36/598 | 1.9 | 33.6% | coding (40/1374 nt) | mdtK | multidrug efflux pump MdtK |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1743499 | 85 (0.830) | 47 (0.460) | 38/598 | 1.7 | 35.6% | coding (43/1374 nt) | mdtK | multidrug efflux pump MdtK |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2033864 | 102 (1.000) | 38 (0.370) | 31/596 | 2.4 | 28.2% | intergenic (+125/‑1971) | rseX/hchA | small regulatory RNA RseX/protein/nucleic acid deglycase 1 |
| ? | NC_000913 | 2042584 = | 92 (0.900) | coding (217/531 nt) | yodB | putative cytochrome b561 YodB | |||||
| * | ? | NC_000913 | 2319846 = | 111 (1.090) | 31 (0.300) | 30/596 | 2.5 | 21.8% | coding (31/2850 nt) | rcsC | histidine kinase RcsC |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3186096 = | NA (NA) | 47 (0.460) | 35/596 | 2.0 | 31.8% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3367617 | 101 (0.990) | coding (692/717 nt) | yhcF | DUF1120 domain‑containing protein YhcF | |||||
| * | ? | NC_000913 | = 3187426 | NA (NA) | 47 (0.460) | 37/598 | 1.8 | 32.0% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 3367613 = | 100 (0.980) | coding (688/717 nt) | yhcF | DUF1120 domain‑containing protein YhcF | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 44 (0.430) | 35/598 | 2.0 | 30.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3888549 | 102 (1.000) | intergenic (+40/‑181) | tnaC/tnaA | tnaAB operon leader peptide/tryptophanase | |||||