mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,645 | G→A | W282* (TGG→TAG) | thrB → | homoserine kinase |
| RA | 71,170 | T→C | S262P (TCG→CCG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 80,168 | C→T | V233I (GTT→ATT) | leuC ← | 3‑isopropylmalate dehydratase subunit LeuC |
| RA | 81,102 | G→A | S286L (TCG→TTG) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 154,182 | C→T | L415L (CTG→CTA) | htrE ← | putative fimbrial usher protein HtrE |
| RA | 156,068 | A→G | V45A (GTA→GCA) | yadV ← | putative fimbrial chaperone YadV |
| MC JC | 255,892 | Δ18,063 bp | IS5‑mediated | gpt–[ykfC] | 26 genes gpt, frsA, crl, insB9, insA9, crl, phoE, proB, proA, thrW, ykfI, yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI1, insN, eyeA, [ykfC] |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 292,019 | C→T | L174L (CTA→TTA) | yagJ → | protein YagJ |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 321,260 | A→T | intergenic (+179/‑348) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| RA | 335,909 | A→G | intergenic (+24/‑16) | yahD → / → yahE | ankyrin repeat‑containing protein YahD/DUF2877 domain‑containing protein YahE |
| RA | 410,666 | C→T | P175S (CCT→TCT) | mak → | fructokinase |
| RA | 421,027 | C→T | R14R (CGC→CGT) | proY → | putative transporter ProY |
| RA | 428,720 | G→A | K358K (AAG→AAA) | secD → | Sec translocon accessory complex subunit SecD |
| RA | 431,912 | C→T | W34* (TGG→TGA) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| RA | 465,005 | G→A | V181V (GTC→GTT) | queC ← | 7‑cyano‑7‑deazaguanine synthase |
| RA | 472,849 | A→G | G84G (GGA→GGG) | glnK → | nitrogen regulatory protein PII‑2 |
| RA | 482,771 | A→T | Y545N (TAT→AAT) | acrB ← | multidrug efflux pump RND permease AcrB |
| RA | 495,622 | C→T | T168I (ACC→ATC) | htpG → | chaperone protein HtpG |
| RA | 534,742 | G→A | G276D (GGT→GAT) | gcl → | glyoxylate carboligase |
| MC JC | 575,786 | Δ3,398 bp | IS5‑mediated | [nmpC]–borD | [nmpC], essD, rrrD, rzpD, rzoD, borD |
| RA | 582,597 | C→T | intergenic (+500/‑278) | tfaD → / → tfaX | putative tail fiber assembly protein TfaD/protein TfaX |
| RA | 640,133 | C→T | L127L (CTC→CTT) | ahpF → | alkyl hydroperoxide reductase, AhpF component |
| RA | 694,941 | G→A | L5L (CTC→CTT) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 696,470 | C→T | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 708,774 | G→A | A147A (GCG→GCA) | chiP → | chitooligosaccharide outer membrane channel |
| RA | 721,604 | G→A | R44C (CGT→TGT) | kdpE ← | DNA‑binding transcriptional activator KdpE |
| RA | 780,624 | C→T | noncoding (71/76 nt) | lysT → | tRNA‑Lys |
| RA | 789,580 | C→A | E134* (GAA→TAA) | galK ← | galactokinase |
| JC JC | 820,914 | IS5 (+) +4 bp | coding (122‑125/714 nt) | ybhM → | Bax1‑I family protein YbhM |
| RA | 822,527 | C→T | E405K (GAA→AAA) | clsB ← | cardiolipin synthase B |
| RA | 883,396 | C→T | intergenic (‑8/‑277) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 908,169 | C→T | R38R (AGG→AGA) | ybjT ← | putative NAD(P)‑binding protein YbjT |
| JC | 924,170 | Δ10 bp | coding (907‑916/2277 nt) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 1,038,477 | 2 bp→AA | coding (738‑739/1545 nt) | appC → | cytochrome bd‑II subunit 1 |
| RA | 1,038,933 | C→T | S398S (TCC→TCT) | appC → | cytochrome bd‑II subunit 1 |
| JC JC | 1,105,699 | IS1 (+) +9 bp | coding (286‑294/312 nt) | ymdA → | uncharacterized protein YmdA |
| RA | 1,123,823 | 2 bp→AG | coding (231‑232/648 nt) | grxB ← | reduced glutaredoxin 2 |
| RA | 1,147,792 | T→A | S58T (TCG→ACG) | plsX → | putative phosphate acyltransferase |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,194,922 | G→A | T10T (ACC→ACT) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,201,548 | A→C | T18P (ACC→CCA) | ymfI → | uncharacterized protein YmfI |
| RA | 1,201,550 | C→A | T18P (ACC→CCA) | ymfI → | uncharacterized protein YmfI |
| RA | 1,253,002 | C→T | intergenic (+17/+83) | dhaR → / ← ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| RA | 1,261,462 | G→A | F138F (TTC→TTT) | prs ← | ribose‑phosphate diphosphokinase |
| RA | 1,265,412 | T→A | M134K (ATG→AAG) | prfA → | peptide chain release factor RF1 |
| RA | 1,278,858 | G→A | G301D (GGT→GAT) | narK → | nitrate:nitrite antiporter NarK |
| RA | 1,279,307 | G→A | V451M (GTG→ATG) | narK → | nitrate:nitrite antiporter NarK |
| RA | 1,285,662 | C→T | A175V (GCG→GTG) | narJ → | nitrate reductase 1 molybdenum cofactor assembly chaperone |
| RA | 1,289,871 | G→A | W209* (TGG→TGA) | rssA → | putative patatin‑like phospholipase RssA |
| JC JC | 1,290,542 | IS1 (+) +9 bp | coding (301‑309/1014 nt) | rssB → | regulator of RpoS |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,308,684 | T→C | intergenic (‑39/‑104) | clsA ← / → yciY | cardiolipin synthase A/uncharacterized protein YciY |
| RA | 1,331,059 | 2 bp→AT | coding (12‑13/2598 nt) | topA → | DNA topoisomerase 1 |
| RA | 1,334,416 | G→A | E188K (GAA→AAA) | cysB → | DNA‑binding transcriptional dual regulator CysB |
| RA | 1,335,273 | G→A | W42* (TGG→TGA) | ymiA → | uncharacterized protein YmiA |
| RA | 1,336,316 | G→A | W162* (TGG→TGA) | acnA → | aconitate hydratase 1 |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,379,534 | G→A | A551T (GCG→ACG) | ycjT → | kojibiose phosphorylase |
| RA | 1,380,878 | G→A | intergenic (+71/‑1069) | ycjU → / → ompG | beta‑phosphoglucomutase/outer membrane porin G |
| RA | 1,381,391 | G→A | intergenic (+584/‑556) | ycjU → / → ompG | beta‑phosphoglucomutase/outer membrane porin G |
| RA | 1,381,989 | G→A | G15R (GGA→AGA) | ompG → | outer membrane porin G |
| RA | 1,384,299 | G→A | E61E (GAG→GAA) | ycjX → | DUF463 domain‑containing protein YcjX |
| RA | 1,386,294 | G→A | V262I (GTA→ATA) | ycjF → | DUF697 domain‑containing inner membrane protein YcjF |
| RA | 1,389,732 | G→A | G268D (GGT→GAT) | ycjG → | L‑Ala‑D/L‑Glu epimerase |
| RA | 1,395,367 | G→A | R186C (CGT→TGT) | ynaI ← | small conductance mechanosensitive channel YnaI |
| MC JC | 1,397,239 | Δ49,912 bp | IS5‑mediated | ynaJ–[feaR] | 61 genes ynaJ, uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, ynaN, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, kilS, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH5, lomR, stfR, tfaR, pinR, ynaE, ynaM, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, [feaR] |
| RA | 1,447,847 | G→A | G110D (GGC→GAC) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,451,495 | G→A | intergenic (‑146/+102) | tynA ← / ← paaZ | copper‑containing amine oxidase/fused 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase and oxepin‑CoA hydrolase |
| RA | 1,451,818 | G→A | L609L (CTG→TTG) | paaZ ← | fused 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase and oxepin‑CoA hydrolase |
| RA | 1,471,130 | G→A | pseudogene (612/3495 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,476,960 | G→A | S606N (AGT→AAT) | ydbD → | DUF2773 domain‑containing protein YdbD |
| RA | 1,480,239 | G→A | G368R (GGG→AGG) | ynbC → | hydrolase/methyltransferase domain‑containing protein YnbC |
| RA | 1,481,364 | G→A | R152R (AGG→AGA) | ynbD → | phosphatase domain‑containing protein YnbD |
| RA | 1,485,508 | G→A | W816* (TGG→TGA) | hrpA → | ATP‑dependent 3'‑>5' RNA helicase HrpA |
| RA | 1,489,607 | G→A | G459D (GGC→GAC) | aldA → | aldehyde dehydrogenase A |
| RA | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| RA | 1,497,862 | G→A | G336E (GGG→GAG) | opgD → | glucans biosynthesis protein D |
| RA | 1,499,082 | G→A | E49K (GAG→AAG) | rimL → | ribosomal‑protein‑L12‑serine N‑acetyltransferase |
| RA | 1,502,803 | G→A | G116E (GGG→GAG) | ydcL → | DUF3313 domain‑containing lipoprotein YdcL |
| RA | 1,507,136 | G→A | C119Y (TGC→TAC) | rlhA → | 23S rRNA 5‑hydroxycytidine C2501 synthase |
| RA | 1,507,509 | G→A | G243G (GGG→GGA) | rlhA → | 23S rRNA 5‑hydroxycytidine C2501 synthase |
| RA | 1,510,901 | G→A | R300H (CGC→CAC) | ydcR → | fused putative DNA‑binding transcriptional regulator/putative aminotransferase YdcR |
| RA | 1,517,587 | 2 bp→TT | intergenic (+25/‑60) | ortT → / → ydcY | orphan toxin OrtT/DUF2526 domain‑containing protein YdcY |
| RA | 1,522,583 | C→T | Q161Q (CAG→CAA) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,541,037 | A→G | I518I (ATT→ATC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,541,058 | G→A | T511T (ACC→ACT) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,548,796 | G→A | G466S (GGT→AGT) | fdnG → | formate dehydrogenase N subunit alpha |
| RA | 1,591,711 | C→A | E156* (GAG→TAG) | hipA ← | serine/threonine‑protein kinase toxin HipA |
| RA | 1,614,927 | G→A | E42K (GAA→AAA) | yneJ → | putative DNA‑binding transcriptional regulator YneJ |
| RA | 1,629,247 | C→T | I11I (ATC→ATT) | ydfZ → | putative selenoprotein YdfZ |
| RA | 1,636,854 | G→A | G33G (GGG→GGA) | ynfO → | DUF3950 domain‑containing protein YnfO |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,646,587 | G→A | Q61Q (CAG→CAA) | flxA → | PF14282 family protein FlxA |
| RA | 1,650,234 | G→A | intergenic (+249/+2494) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,660,102 | C→T | N678N (AAC→AAT) | ynfE → | putative selenate reductase YnfE |
| RA | 1,664,527 | G→A | D8N (GAT→AAT) | dmsD → | redox enzyme maturation protein DmsD |
| RA | 1,664,866 | C→T | Q121* (CAA→TAA) | dmsD → | redox enzyme maturation protein DmsD |
| RA | 1,667,460 | G→A | Q369* (CAG→TAG) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,677,597 | G→A | Q103* (CAA→TAA) | pntA ← | pyridine nucleotide transhydrogenase subunit alpha |
| RA | 1,684,969 | G→A | Q237Q (CAG→CAA) | tus → | DNA replication terminus site‑binding protein |
| RA | 1,692,637 | G→A | S72F (TCC→TTC) | uidC ← | outer membrane porin family protein UidC |
| RA | 1,701,498 | G→A | C181Y (TGC→TAC) | malY → | negative regulator of MalT activity/cystathionine beta‑lyase |
| RA | 1,712,661 | A→T | intergenic (+503/‑108) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,719,133 | G→A | A157V (GCT→GTT) | anmK ← | anhydro‑N‑acetylmuramic acid kinase |
| RA | 1,723,658 | G→A | G513E (GGA→GAA) | ydhK → | putative transporter YdhK |
| RA | 1,730,562 | G→A | W492* (TGG→TGA) | lhr → | ATP‑dependent helicase Lhr |
| RA | 1,748,841 | C→T | R240K (AGA→AAA) | ydhT ← | uncharacterized protein YdhT |
| RA | 1,751,720 | C→T | G2D (GGT→GAT) | ydhW ← | uncharacterized protein YdhW |
| RA | 1,766,605 | G→A | S694F (TCT→TTT) | ydiJ ← | putative FAD‑linked oxidoreductase YdiJ |
| RA | 1,766,814 | G→A | R624R (CGC→CGT) | ydiJ ← | putative FAD‑linked oxidoreductase YdiJ |
| RA | 1,780,275 | G→A | G220D (GGC→GAC) | ydiQ → | putative electron transfer flavoprotein subunit YdiQ |
| RA | 1,795,734 | G→A | G737G (GGC→GGT) | pheT ← | phenylalanine‑‑tRNA ligase subunit beta |
| RA | 1,795,878 | G→A | L689L (CTC→CTT) | pheT ← | phenylalanine‑‑tRNA ligase subunit beta |
| RA | 1,798,325 | G→A | F206F (TTC→TTT) | pheS ← | phenylalanine‑‑tRNA ligase subunit alpha |
| RA | 1,800,306 | G→A | L111L (CTC→CTT) | infC ← | translation initiation factor IF‑3 |
| RA | 1,806,142 | G→A | intergenic (‑59/‑228) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein YdiY/6‑phosphofructokinase 2 |
| RA | 1,816,482 | G→A | F218F (TTC→TTT) | chbG ← | chitooligosaccharide monodeacetylase ChbG |
| RA | 1,826,466 | G→A | S153F (TCC→TTC) | astE ← | succinylglutamate desuccinylase |
| RA | 1,826,583 | G→A | A114V (GCT→GTT) | astE ← | succinylglutamate desuccinylase |
| RA | 1,829,039 | G→A | L232L (CTC→CTT) | astD ← | aldehyde dehydrogenase |
| RA | 1,829,270 | G→A | I155I (ATC→ATT) | astD ← | aldehyde dehydrogenase |
| RA | 1,833,008 | G→A | G194E (GGG→GAG) | xthA → | exodeoxyribonuclease III |
| RA | 1,834,594 | G→A | G160D (GGC→GAC) | ydjY → | 4Fe‑4S ferredoxin‑type domain‑containing protein YdjY |
| RA | 1,836,397 | G→A | E109K (GAG→AAG) | ynjB → | putative ABC transporter periplasmic binding protein YnjB |
| RA | 1,838,612 | G→A | V467V (GTG→GTA) | ynjC → | putative ABC transporter membrane subunit YnjC |
| RA | 1,839,359 | G→A | D205N (GAT→AAT) | ynjD → | putative ABC transporter ATP‑binding protein YnjD |
| RA | 1,841,392 | G→A | R4R (CGC→CGT) | ynjF ← | CDP‑alcohol phosphatidyltransferase domain‑containing protein YnjF |
| RA | 1,842,759 | G→A | G130D (GGC→GAC) | gdhA → | glutamate dehydrogenase |
| RA | 1,846,393 | G→A | Q190* (CAG→TAG) | topB ← | DNA topoisomerase III |
| RA | 1,847,078 | G→A | P311S (CCG→TCG) | selD ← | selenide, water dikinase |
| RA | 1,848,300 | 2 bp→TT | coding (376‑377/552 nt) | ydjA ← | putative oxidoreductase YdjA |
| RA | 1,853,430 | T→C | I184V (ATT→GTT) | ydjE ← | putative transporter YdjE |
| RA | 1,854,611 | G→A | L82F (CTT→TTT) | ydjF ← | putative DNA‑binding transcriptional regulator YdjF |
| RA | 1,888,066 | C→T | A561T (GCC→ACC) | fadD ← | long‑chain‑fatty‑acid‑‑CoA ligase |
| RA | 1,888,507 | C→T | V414M (GTG→ATG) | fadD ← | long‑chain‑fatty‑acid‑‑CoA ligase |
| RA | 1,888,749 | C→T | G333D (GGT→GAT) | fadD ← | long‑chain‑fatty‑acid‑‑CoA ligase |
| RA | 1,889,965 | C→T | V190I (GTT→ATT) | yeaY ← | Slp family lipoprotein YeaY |
| RA | 1,890,357 | C→T | G59D (GGT→GAT) | yeaY ← | Slp family lipoprotein YeaY |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,900,758 | G→A | I276I (ATC→ATT) | yoaE ← | TerC family inner membrane protein YoaE |
| RA | 1,901,699 | C→T | R11R (AGG→AGA) | yoaL ← | protein YoaL |
| RA | 1,905,730 | A→G | M15V (ATG→GTG) | mntP → | Mn(2(+)) exporter |
| RA | 2,023,559 | A→G | T223A (ACT→GCT) | fliR → | flagellar biosynthesis protein FliR |
| RA | 2,027,332 | T→A | E229V (GAA→GTA) | dgcQ ← | diguanylate cyclase DgcQ |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,041,278 | G→A | intergenic (+160/‑97) | msrQ → / → zinT | membrane‑bound flavocytochrome MsrQ/metal‑binding protein ZinT |
| RA | 2,052,885 | G→A | intergenic (+871/‑758) | yeeJ → / → shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| RA | 2,090,780 | C→T | Q197* (CAA→TAA) | hisG → | ATP phosphoribosyltransferase |
| RA | 2,104,024 | G→T | I162I (ATC→ATA) | wbbK ← | putative glycosyltransferase WbbK |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,120,969 | G→A | L196L (CTG→TTG) | wcaJ ← | UDP‑glucose:undecaprenyl‑phosphate glucose‑1‑phosphate transferase |
| RA | 2,142,598 | G→A | L117L (CTC→CTT) | udk ← | uridine/cytidine kinase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,173,448 | C→T | intergenic (‑575/+834) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,233,609 | C→T | Q4* (CAG→TAG) | yeiS → | DUF2542 domain‑containing protein YeiS |
| JC JC | 2,239,316 | IS5 (–) +4 bp | intergenic (‑27/+31) | mglA ← / ← mglB | D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit/D‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein |
| RA | 2,242,247 | C→T | G241R (GGG→AGG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,247,134 | A→C | Y467D (TAC→GAC) | lysP ← | lysine:H(+) symporter |
| RA | 2,361,210 | C→G | E69Q (GAA→CAA) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,404,402 | G→A | S71L (TCG→TTG) | nuoB ← | NADH:quinone oxidoreductase subunit B |
| RA | 2,481,608 | A→G | L190S (TTA→TCA) | emrY ← | tripartite efflux pump membrane subunit EmrY |
| RA | 2,498,392 | A→C | intergenic (‑97/‑279) | alaC ← / → pyrS | glutamate‑‑pyruvate aminotransferase AlaC/sensor histidine kinase PyrS |
| RA | 2,546,804 | T→A | D44E (GAT→GAA) | murP → | N‑acetylmuramic acid‑specific PTS enzyme IICB component/anhydro‑N‑acetylmuramic acid transporter |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,577,937 | T→C | E147E (GAA→GAG) | maeB ← | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+)) |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,745,600 | A→G | Y107H (TAC→CAC) | rimM ← | ribosome maturation factor RimM |
| RA | 2,774,947 | G→A | G544S (GGT→AGT) | yfjW → | uncharacterized protein YfjW |
| RA | 2,867,358 | +AA | coding (194/993 nt) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,880,635 | T→C | L138L (TTA→TTG) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,962,178 | C→T | S84N (AGC→AAC) | recC ← | exodeoxyribonuclease V subunit RecC |
| RA | 3,025,601 | (T)5→4 | coding (1251/1401 nt) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,070,858 | T→G | K129N (AAA→AAC) | fbaA ← | fructose‑bisphosphate aldolase class II |
| MC JC | 3,131,341 | Δ128 bp | IS5‑mediated | yghQ ← | putative transport protein YghQ |
| RA | 3,169,395 | C→T | W94* (TGG→TGA) | ygiW ← | BOF family protein YgiW |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,256,301 | G→A | S117S (TCC→TCT) | cyuA ← | putative L‑cysteine desulfidase CyuA |
| RA | 3,264,090 | T→C | T310A (ACG→GCG) | tdcC ← | threonine/serine:H(+) symporter |
| RA | 3,279,276 | C→G | F121L (TTC→TTG) | kbaZ → | putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone |
| RA | 3,296,481 | G→A | V25M (GTG→ATG) | dolP → | division and outer membrane stress‑associated lipid‑binding lipoprotein |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,344,624 | C→T | D227D (GAC→GAT) | lptB → | lipopolysaccharide transport system ATP binding protein LptB |
| RA | 3,354,130 | C→T | intergenic (‑80/‑595) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,355,840 | C→T | A372A (GCC→GCT) | gltB → | glutamate synthase subunit GltB |
| RA | 3,378,933 | G→A | C355C (TGC→TGT) | zapE ← | cell division protein ZapE |
| RA | 3,380,224 | G→A | V12I (GTC→ATC) | zapG → | Z‑ring associated protein G |
| RA | 3,383,255 | G→A | P352P (CCG→CCA) | degS → | serine endoprotease |
| RA | 3,387,090 | G→A | L367L (CTG→TTG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,387,098 | G→A | S364F (TCC→TTC) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,390,921 | G→A | P370S (CCG→TCG) | tldD ← | metalloprotease subunit TldD |
| RA | 3,391,506 | G→A | L175L (CTA→TTA) | tldD ← | metalloprotease subunit TldD |
| RA | 3,392,062 | G→A | intergenic (‑34/+396) | tldD ← / ← yhdP | metalloprotease subunit TldD/phospholipid transport factor YhdP |
| RA | 3,397,465 | G→A | P111S (CCG→TCG) | rng ← | RNase G |
| RA | 3,398,163 | G→A | I72I (ATC→ATT) | yhdE ← | nucleoside triphosphate pyrophosphatase YhdE |
| RA | 3,399,245 | G→A | T245I (ACC→ATC) | mreC ← | cell shape determining protein MreC |
| RA | 3,402,640 | G→A | G231G (GGC→GGT) | csrD ← | regulator of CsrB and CsrC decay |
| RA | 3,411,222 | G→A | A315T (GCA→ACA) | dusB → | tRNA‑dihydrouridine synthase B |
| RA | 3,411,333 | G→A | Q21Q (CAG→CAA) | fis → | DNA‑binding transcriptional dual regulator Fis |
| RA | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,412,692 | G→A | Q24Q (CAG→CAA) | yhdU → | DUF2556 domain‑containing protein YhdU |
| RA | 3,417,464 | G→A | G811D (GGC→GAC) | acrF → | multidrug efflux pump RND permease AcrF |
| RA | 3,423,433 | G→A | noncoding (110/120 nt) | rrfF ← | 5S ribosomal RNA |
| RA | 3,430,178 | G→A | P221S (CCT→TCT) | aroE ← | shikimate dehydrogenase |
| RA | 3,433,348 | G→A | N71N (AAC→AAT) | smf ← | protein Smf |
| RA | 3,433,352 | G→A | P70L (CCC→CTC) | smf ← | protein Smf |
| RA | 3,433,900 | C→T | L71L (CTA→TTA) | def → | peptide deformylase |
| RA | 3,474,425 | T→G | K43T (AAA→ACA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,486,175 | G→A | C19Y (TGC→TAC) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,486,502 | C→T | T128I (ACT→ATT) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,499,989 | G→A | G27D (GGT→GAT) | frlA → | fructoselysine/psicoselysine transporter |
| RA | 3,500,075 | G→A | V56M (GTG→ATG) | frlA → | fructoselysine/psicoselysine transporter |
| RA | 3,506,695 | C→T | G214G (GGG→GGA) | yhfT ← | uncharacterized protein YhfT |
| RA | 3,507,249 | C→T | D30N (GAC→AAC) | yhfT ← | uncharacterized protein YhfT |
| RA | 3,511,196 | G→A | S76F (TCC→TTC) | yhfY ← | PRD domain‑containing protein YhfY |
| RA | 3,511,466 | C→T | V293V (GTG→GTA) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,523,972 | G→A | D368N (GAC→AAC) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,524,618 | G→A | G583D (GGC→GAC) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,529,763 | G→A | intergenic (+14/‑11) | hslR → / → hslO | heat shock protein Hsp15/molecular chaperone Hsp33 |
| RA | 3,530,911 | T→C | D510G (GAT→GGT) | yhgE ← | putative transport protein YhgE |
| RA | 3,532,269 | G→A | S57S (TCC→TCT) | yhgE ← | putative transport protein YhgE |
| RA | 3,553,283 | G→A | G67S (GGT→AGT) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,553,965 | G→A | G294E (GGG→GAG) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,555,047 | 2 bp→TG | coding (1963‑1964/2706 nt) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,362 | G→A | intergenic (+496/+260) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,578,486 | C→T | V81I (GTA→ATA) | gntR ← | DNA‑binding transcriptional repressor GntR |
| RA | 3,589,062 | C→T | G40D (GGC→GAC) | ugpC ← | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| RA | 3,591,926 | C→T | G134S (GGC→AGC) | ugpB ← | sn‑glycerol 3‑phosphate ABC transporter periplasmic binding protein |
| RA | 3,615,376 | C→T | P46S (CCG→TCG) | nikB → | Ni(2(+)) ABC transporter membrane subunit NikB |
| RA | 3,619,344 | C→T | P51P (CCC→CCT) | rhsB → | rhs element protein RhsB |
| RA | 3,646,970 | G→T | Q224H (CAG→CAT) | gor → | glutathione reductase (NADPH) |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,649,847 | C→T | L305F (CTT→TTT) | arsB → | arsenite/antimonite:H(+) antiporter |
| RA | 3,665,264 | C→T | E183K (GAG→AAG) | gadX ← | DNA‑binding transcriptional dual regulator GadX |
| RA | 3,665,323 | C→T | R163Q (CGA→CAA) | gadX ← | DNA‑binding transcriptional dual regulator GadX |
| RA | 3,679,581 | G→A | G55R (GGA→AGA) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,696,355 | C→T | intergenic (‑170/‑103) | yhjR ← / → bcsE | PF10945 family protein YhjR/c‑di‑GMP‑binding protein BcsE |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,729,440 | 2 bp→TT | noncoding (105‑106/160 nt) | xylZ ← | small RNA XylZ |
| RA | 3,730,560 | C→T | W69* (TGG→TAG) | xylA ← | xylose isomerase |
| RA | 3,744,021 | C→T | S93S (AGC→AGT) | yiaL → | DUF386 domain‑containing protein YiaL |
| RA | 3,748,394 | C→T | A437A (GCC→GCT) | lyxK → | L‑xylulose kinase |
| RA | 3,751,455 | C→T | V138V (GTG→GTA) | yiaT ← | outer membrane protein YiaT |
| RA | 3,754,203 | C→T | G76R (GGA→AGA) | yiaW ← | DUF3302 domain‑containing protein YiaW |
| RA | 3,758,605 | C→T | W419* (TGG→TGA) | selB ← | selenocysteyl‑tRNA‑specific translation elongation factor |
| RA | 3,770,539 | C→T | V281M (GTG→ATG) | yibH ← | inner membrane protein YibH |
| RA | 3,773,173 | Δ1 bp | coding (893/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,773,176 | C→T | S299F (TCT→TTT) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,799,080 | C→T | R78K (AGA→AAA) | waaU ← | putative ADP‑heptose:LPS heptosyltransferase 4 |
| RA | 3,806,032 | C→T | E346K (GAG→AAG) | waaG ← | lipopolysaccharide glucosyltransferase I |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,817,167 | C→T | T164T (ACC→ACT) | yicC → | putative RNase adaptor protein YicC |
| RA | 3,838,839 | C→T | L198L (CTG→TTG) | yicL → | putative transporter YicL |
| RA | 3,858,148 | C→T | R86H (CGC→CAC) | yidJ ← | putative sulfatase/phosphatase YidJ |
| RA | 3,858,455 | C→T | R554R (CGG→CGA) | yidK ← | putative transporter YidK |
| RA | 3,916,243 | A→T | L378Q (CTG→CAG) | atpD ← | ATP synthase F1 complex subunit beta |
| RA | 3,926,991 | G→A | L5L (CTG→TTG) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,931,779 | T→C | F155S (TTT→TCT) | kup → | K(+):H(+) symporter Kup |
| RA | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| RA | 4,120,093 | T→C | Q86R (CAA→CGA) | menA ← | 1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase |
| RA | 4,153,836 | G→A | Q338* (CAA→TAA) | argE ← | acetylornithine deacetylase |
| MC JC | 4,180,661 | Δ6 bp | coding (102‑107/366 nt) | rplL → | 50S ribosomal subunit protein L12 |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,215,670 | G→T | D65Y (GAT→TAT) | aceB → | malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,310,977 | C→T | A2T (GCC→ACC) | alsA ← | D‑allose ABC transporter ATP binding subunit |
| RA | 4,319,018 | C→T | D197N (GAC→AAC) | phnJ ← | carbon‑phosphorus lyase core complex subunit PhnJ |
| RA | 4,325,177 | C→T | intergenic (‑12/+121) | phnC ← / ← yjdN | phosphonate/phosphate ABC transporter ATP binding subunit/PF06983 family protein YjdN |
| RA | 4,325,485 | C→T | G86D (GGC→GAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,331,890 | C→T | L463L (CTC→CTT) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,332,923 | C→T | S117N (AGC→AAC) | basS ← | sensor histidine kinase BasS |
| RA | 4,338,692 | C→T | P610P (CCG→CCA) | adiA ← | arginine decarboxylase, degradative |
| RA | 4,340,671 | C→T | intergenic (‑150/+49) | adiA ← / ← melR | arginine decarboxylase, degradative/DNA‑binding transcriptional dual regulator MelR |
| RA | 4,342,119 | C→T | T70I (ACC→ATC) | melA → | alpha‑galactosidase |
| RA | 4,347,486 | C→T | S420N (AGC→AAC) | dcuB ← | anaerobic C4‑dicarboxylate transporter DcuB |
| RA | 4,352,881 | C→T | intergenic (+1/‑27) | ghoS → / → ghoT | antitoxin of the GhoTS toxin‑antitoxin system/toxin of the GhoTS toxin‑antitoxin system |
| RA | 4,364,530 | C→T | L171L (TTG→TTA) | dsbD ← | thiol‑disulfide exchange protein DsbD |
| RA | 4,369,788 | C→T | E209K (GAA→AAA) | yjeH ← | L‑methionine/branched chain amino acid exporter |
| RA | 4,384,749 | C→T | A304V (GCG→GTG) | yjeM → | putative transporter YjeM |
| RA | 4,386,553 | C→T | V940M (GTG→ATG) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,386,622 | C→T | E917K (GAA→AAA) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,386,718 | C→T | G885S (GGC→AGC) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,388,393 | C→T | R326R (CGG→CGA) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,392,011 | C→T | T136T (ACC→ACT) | orn → | oligoribonuclease |
| RA | 4,393,834 | C→T | V78V (GTG→GTA) | queG ← | epoxyqueuosine reductase |
| RA | 4,399,496 | C→T | A82V (GCT→GTT) | miaA → | tRNA dimethylallyltransferase |
| RA | 4,399,890 | C→T | R213R (CGC→CGT) | miaA → | tRNA dimethylallyltransferase |
| RA | 4,417,079 | A→G | Y43C (TAT→TGT) | yjfP → | carboxylesterase |
| RA | 4,437,529 | C→T | intergenic (+34/‑178) | cysQ → / → ytfI | 3'(2'),5'‑bisphosphate nucleotidase/protein YtfI |
| RA | 4,437,890 | C→T | Q62* (CAG→TAG) | ytfI → | protein YtfI |
| RA | 4,439,373 | C→T | intergenic (‑111/‑214) | ytfJ ← / → ytfK | PF09695 family protein YtfJ/stringent response modulator YtfK |
| RA | 4,443,638 | C→T | A419A (GCC→GCT) | tamA → | translocation and assembly module subunit TamA |
| RA | 4,447,716 | C→T | S1202F (TCC→TTC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,451,585 | C→T | L176L (CTC→CTT) | ytfR → | galactofuranose ABC transporter putative ATP binding subunit |
| RA | 4,454,889 | C→T | G241S (GGT→AGT) | fbp ← | fructose‑1,6‑bisphosphatase 1 |
| RA | 4,456,150 | C→T | T122T (ACC→ACT) | mpl → | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| RA | 4,460,211 | C→T | E52K (GAA→AAA) | nrdG ← | anaerobic ribonucleoside‑triphosphate reductase activating protein |
| RA | 4,468,302 | C→T | R226R (CGC→CGT) | mgtA → | Mg(2(+)) importing P‑type ATPase |
| RA | 4,470,103 | C→T | P827S (CCG→TCG) | mgtA → | Mg(2(+)) importing P‑type ATPase |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,474,886 | C→T | L9F (CTT→TTT) | tabA → | DUF386 domain‑containing toxin‑antitoxin biofilm protein TabA |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,476,605 | G→A | S390N (AGC→AAC) | yjgL → | protein YjgL |
| RA | 4,489,016 | C→T | E350K (GAA→AAA) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| JC JC | 4,542,042 | IS1 (+) +8 bp | coding (6‑13/597 nt) | fimE → | regulator for fimA |
| RA | 4,551,552 | C→T | intergenic (‑256/‑84) | gntP ← / → uxuA | fructuronate transporter/D‑mannonate dehydratase |
| RA | 4,561,547 | C→T | A377T (GCG→ACG) | yjiJ ← | putative transporter YjiJ |
| RA | 4,571,194 | C→T | E127E (GAG→GAA) | yjiR ← | fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR |
| RA | 4,573,105 | C→T | P231L (CCT→CTT) | yjiT → | putative uncharacterized protein YjiT |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 361657 | 362203 | 547 | 108 [0] | [0] 107 | [lacA]–[lacY] | [lacA],[lacY] |
| * | * | ÷ | NC_000913 | 1978484 | 1979270 | 787 | 106 [0] | [0] 127 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423806–3424234 | 3424452–3424239 | 6–647 | 33 [30] | [30] 31 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 107 (1.050) | 76/596 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 361656 | 0 (0.000) | coding (205/612 nt) | lacA | galactoside O‑acetyltransferase | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 106 (1.040) | 79/598 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 362204 = | 0 (0.000) | coding (976/1254 nt) | lacY | lactose permease | |||||
| * | ? | NC_000913 | 574591 = | NA (NA) | 103 (1.010) | 73/598 | 0.2 | 98.1% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 584978 = | 2 (0.020) | coding (656/954 nt) | ompT | omptin family outer membrane protease OmpT | |||||
| * | ? | NC_000913 | 574591 = | NA (NA) | 121 (1.180) | 84/598 | 0.1 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 584981 | 0 (0.000) | coding (653/954 nt) | ompT | omptin family outer membrane protease OmpT | |||||
| * | ? | NC_000913 | 1207790 = | 22 (0.210) | 72 (0.740) | 50/566 | 0.7 | 78.3% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 19 (0.200) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 25 (0.240) | 66 (0.680) | 46/566 | 0.8 | 75.6% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 19 (0.200) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 112 (1.110) | 81/590 | 0.1 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978483 | 0 (0.000) | 106 (1.040) | 73/598 | 0.2 | 100% | intergenic (‑286/+35) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| ? | NC_000913 | = 2070271 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 111 (1.140) +TTAAGTAATTGAGTG |
79/568 | 0.1 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | 2996360 = | NA (NA) | intergenic (+2504/+12) | ygeI/insD4 | protein YgeI/IS2 insertion element protein InsB | |||||
| * | ? | NC_000913 | 4542682 = | 137 (1.340) | 82 (0.830) | 57/580 | 0.5 | 39.9% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 114 (1.150) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 143 (1.400) | 88 (0.890) | 52/580 | 0.6 | 41.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 114 (1.150) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||