Gene Mutants - Detail

ME No. ME9062
Strain Name BW25113
Plasmid Integrated
Plasmid Autonomous
Genotype rrnB DElacZ4787 HsdR514 DE(araBAD)567 DE(rhaBAD)568 rph-1 (old genotype: lac1q rrnBT14 DlacZWJ16 hsdR514 DaraBADAH33 DrhaBADLD78)
Parent Donor
Parent Recipient
Latest Marker
Reference Usui Y, Hirasawa T, Furusawa C, Shirai T, Yamamoto N, Mori H, Shimizu H.
Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using (13)C metabolic flux analysis.
Microb. Cell Fact.  (2012)  11   87  
[PubMed ID = 22721472]  [RRC reference
Okamoto S, Tamaru A, Nakajima C, Nishimura K, Tanaka Y, Tokuyama S, Suzuki Y, Ochi K.
Loss of a conserved 7-methylguanosine modification in 16S rRNA confers low-level streptomycin resistance in bacteria.
Mol. Microbiol.  (2007)  63(4)   1096-106  
[PubMed ID = 17238915]  [RRC reference
Maeda T, Sanchez-Torres V, Wood TK.
Metabolic engineering to enhance bacterial hydrogen production.
Microb Biotechnol  (2008)  1(1)   30-9  
[PubMed ID = 21261819]  [RRC reference
Maeda T, Vardar G, Self WT, Wood TK.
Inhibition of hydrogen uptake in Escherichia coli by expressing the hydrogenase from the cyanobacterium Synechocystis sp. PCC 6803.
BMC Biotechnol.  (2007)  7   25  
[PubMed ID = 17521447]  [RRC reference
Maeda T, Sanchez-Torres V, Wood TK.
Enhanced hydrogen production from glucose by metabolically engineered Escherichia coli.
Appl. Microbiol. Biotechnol.  (2007)  77(4)   879-90  
[PubMed ID = 17938909]  [RRC reference
Lin XM, Li H, Wang C, Peng XX.
Proteomic analysis of nalidixic acid resistance in Escherichia coli: identification and functional characterization of OM proteins.
J. Proteome Res.  (2008)  7(6)   2399-405  
[PubMed ID = 18438992]  [RRC reference
Li H, Wang BC, Xu WJ, Lin XM, Peng XX.
Identification and network of outer membrane proteins regulating streptomysin resistance in Escherichia coli.
J. Proteome Res.  (2008)  7(9)   4040-9  
[PubMed ID = 18680355]  [RRC reference
Noor R, Murata M, Nagamitsu H, Klein G, Raina S, Yamada M.
Dissection of sigma(E)-dependent cell lysis in Escherichia coli: roles of RpoE regulators RseA, RseB and periplasmic folding catalyst PpiD.
Genes Cells  (2009)  14(7)   885-99  
[PubMed ID = 19549168]  [RRC reference
Noor R, Murata M, Yamada M.
Oxidative stress as a trigger for growth phase-specific sigmaE-dependent cell lysis in Escherichia coli.
J. Mol. Microbiol. Biotechnol.  (2009)  17(4)   177-87  
[PubMed ID = 19729880]  [RRC reference
Arnold T, Zeth K, Linke D.
Structure and function of colicin S4, a colicin with a duplicated receptor-binding domain.
J. Biol. Chem.  (2009)  284(10)   6403-13  
[PubMed ID = 19056731]  [RRC reference
Shiomi D, Sakai M, Niki H.
Determination of bacterial rod shape by a novel cytoskeletal membrane protein.
EMBO J.  (2008)  27(23)   3081-91  
[PubMed ID = 19008860]  [RRC reference
Purta E, O'Connor M, Bujnicki JM, Douthwaite S.
YccW is the m5C methyltransferase specific for 23S rRNA nucleotide 1962.
J. Mol. Biol.  (2008)  383(3)   641-51  
[PubMed ID = 18786544]  [RRC reference
Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Douthwaite S.
YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA.
RNA  (2008)  14(10)   2234-44  
[PubMed ID = 18755835]  [RRC reference
Kohanski MA, Dwyer DJ, Wierzbowski J, Cottarel G, Collins JJ.
Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death.
Cell  (2008)  135(4)   679-90  
[PubMed ID = 19013277]  [RRC reference
Kohanski MA, Dwyer DJ, Hayete B, Lawrence CA, Collins JJ.
A common mechanism of cellular death induced by bactericidal antibiotics.
Cell  (2007)  130(5)   797-810  
[PubMed ID = 17803904]  [RRC reference
Dwyer DJ, Kohanski MA, Hayete B, Collins JJ.
Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli.
Mol. Syst. Biol.  (2007)  3   91  
[PubMed ID = 17353933]  [RRC reference
Zhang XS, García-Contreras R, Wood TK.
YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity.
J. Bacteriol.  (2007)  189(8)   3051-62  
[PubMed ID = 17293424]  [RRC reference
Smith LK, Gomez MJ, Shatalin KY, Lee H, Neyfakh AA.
Monitoring of gene knockouts: genome-wide profiling of conditionally essential genes.
Genome Biol.  (2007)  8(5)   R87  
[PubMed ID = 17519022]  [RRC reference
Qimron U, Kulczyk AW, Hamdan SM, Tabor S, Richardson CC.
Inadequate inhibition of host RNA polymerase restricts T7 bacteriophage growth on hosts overexpressing udk.
Mol. Microbiol.  (2008)  67(2)   448-57  
[PubMed ID = 18067538]  [RRC reference
Pérez JM, Calderón IL, Arenas FA, Fuentes DE, Pradenas GA, Fuentes EL, Sandoval JM, Castro ME, Elías AO, Vásquez CC.
Bacterial toxicity of potassium tellurite: unveiling an ancient enigma.
PLoS ONE  (2007)  2(2)   e211  
[PubMed ID = 17299591]  [RRC reference
Culture Condition
Other Remarks sequence (FASTQ format)