Gene Mutants - Detail

ME No. ME9062
Strain Name BW25113
Sex
Plasmid Integrated
Plasmid Autonomous
Prophage
Genotype rrnB DElacZ4787 HsdR514 DE(araBAD)567 DE(rhaBAD)568 rph-1 (old genotype: lac1q rrnBT14 DlacZWJ16 hsdR514 DaraBADAH33 DrhaBADLD78)
Parent Donor
Parent Recipient
Methods
Latest Marker
Selection
Source
Gene Mutants Detail Info
Reference Abe R, Akeda Y, Sugawara Y, Matsumoto Y, Motooka D, Kawahara R, Yamamoto N, Tomono K, Iida T, Hamada S.
Enhanced Carbapenem Resistance through Multimerization of Plasmids Carrying Carbapenemase Genes.
mBio  (2021)  12(3)   e0018621  
[PubMed ID = 34154401]  [RRC reference
Toyotake Y, Nishiyama M, Yokoyama F, Ogawa T, Kawamoto J, Kurihara T.
A Novel Lysophosphatidic Acid Acyltransferase of Escherichia coli Produces Membrane Phospholipids with a cis-vaccenoyl Group and Is Related to Flagellar Formation.
Biomolecules  (2020)  10(5)  
[PubMed ID = 32403425]  [RRC reference
Shu Saito, Ryu Imai, Yuki Miyahara, Mari Nakagawa, Izumi Orita, Takeharu Tsuge, Toshiaki Fukui
Biosynthesis of Poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) From Glucose by Escherichia coli Through Butyryl-CoA Formation Driven by Ccr-Emd Combination
Frontiers in Bioengineering and Biotechnology  (2022)  10  
[PubMed ID = 35646875]  [RRC reference
Riko Shirakawa, Kazuya Ishikawa, Kazuyuki Furuta, Chikara Kaito
Knockout of ribosomal protein RpmJ leads to zinc resistance in Escherichia coli
PLOS ONE  (2023)  18   e0277162  
[PubMed ID = 36961858]  [RRC reference
Kotaro Sano, Hiroaki Kobayashi, Hirotaka Chuta, Nozomi Matsuyoshi, Yuki Kato, Hiroshi Ogasawara
CsgI (YccT) Is a Novel Inhibitor of Curli Fimbriae Formation in Escherichia coli Preventing CsgA Polymerization and Curli Gene Expression
International Journal of Molecular Sciences  (2023)  24   4357  
[PubMed ID = 36901788]  [RRC reference
Gyuhyeok Cho, Jangmin Lee, Jungwook Kim
Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification
Nucleic Acids Research  (2023)  51   1971-1983  
[PubMed ID = 36762482]  [RRC reference
Kotaro Yamaji, Rumine Taniguchi, Hiroyuki Urano, Hiroshi Ogasawara
FEBS Letters  (2023)  597   573-584  
[PubMed ID = 36647922]  [RRC reference
Ryuichi Koga, Minoru Moriyama, Naoko Onodera-Tanifuji, Yoshiko Ishii, Hiroki Takai, Masaki Mizutani, Kohei Oguchi, Reiko Okura, Shingo Suzuki, Yasuhiro Gotoh, Tetsuya Hayashi, Masahide Seki, Yutaka Suzuki, Yudai Nishide, Takahiro Hosokawa, Yuichi Wakamoto, Chikara Furusawa, Takema Fukatsu
Single mutation makes Escherichia coli an insect mutualist
Nature Microbiology  (2022)  7   1141-1150  
[PubMed ID = 35927448]  [RRC reference
Shoichi Mitsunaka, Kohei Yamazaki, Ajeng K. Pramono, Megumi Ikeuchi, Tomoe Kitao, Naoya Ohara, Tomoko Kubori, Hiroki Nagai, Hiroki Ando
Synthetic engineering and biological containment of bacteriophages
Proceedings of the National Academy of Sciences  (2022)  119  
[PubMed ID = 36409909]  [RRC reference
Masatoshi Miyakoshi, Teppei Morita, Asaki Kobayashi, Anna Berger, Hiroki Takahashi, Yasuhiro Gotoh, Tetsuya Hayashi, Kan Tanaka
Glutamine synthetase mRNA releases sRNA from its 3′UTR to regulate carbon/nitrogen metabolic balance in Enterobacteriaceae
eLife  (2022)  11  
[PubMed ID = 36440827]  [RRC reference
Tomonori Kano, Kazuya Ishikawa, Kazuyuki Furuta, Chikara Kaito
Knockout of adenylosuccinate synthase purA increases susceptibility to colistin in Escherichia coli
FEMS Microbiology Letters  (2024)  371  
[PubMed ID = 38305138]  [RRC reference
Beata Kruszewska-Naczk, Mariusz Grinholc, Krzysztof Waleron, Julia Elisabeth Bandow, Aleksandra Rapacka-Zdończyk
Microbiology Spectrum  (2024)  12  
[PubMed ID = 38063383]  [RRC reference
Yuki Soma, Saki Tominaga, Kanako Tokito, Yuri Imado, Kosuke Naka, Taizo Hanai, Masatomo Takahashi, Yoshihiro Izumi, Takeshi Bamba
Trace impurities in sodium phosphate influences the physiological activity of Escherichia coli in M9 minimal medium
Scientific Reports  (2023)  13  
[PubMed ID = 37833342]  [RRC reference
Albebson L. Lim, Bailey W. Miller, Zhenjian Lin, Mark A. Fisher, Louis R. Barrows, Margo G. Haygood, Eric W. Schmidt
Resistance mechanisms for Gram-negative bacteria-specific lipopeptides, turnercyclamycins, differ from that of colistin
Microbiology Spectrum  (2023)  11  
[PubMed ID = 37882570]  [RRC reference
Ando Y, Kobo A, Niwa T, Yamakawa A, Konoma S, Kobayashi Y, Nureki O, Taguchi H, Itoh Y, Chadani Y.
A mini-hairpin shaped nascent peptide blocks translation termination by a distinct mechanism.
Nat Commun  (2025)  16(1)   2323  
[PubMed ID = 40057501]  [RRC reference
Kanda T, Sekijima T, Miyakoshi M.
Post-transcriptional regulation of aromatic amino acid metabolism by GcvB small RNA in Escherichia coli.
Microbiol Spectr  (2025)  13(3)   e0203524  
[PubMed ID = 39868872]  [RRC reference
Kobo A, Taguchi H, Chadani Y.
Nonspecific N-terminal tetrapeptide insertions disrupt the translation arrest induced by ribosome-arresting peptide sequences.
J Biol Chem  (2024)  300(6)   107360  
[PubMed ID = 38735477]  [RRC reference
Aihara M, Gotoh Y, Shirahama S, Matsushima Y, Uchiumi T, Kang D, Hayashi T.
Generation and maintenance of the circularized multimeric IS26-associated translocatable unit encoding multidrug resistance.
Commun Biol  (2024)  7(1)   597  
[PubMed ID = 38762617]  [RRC reference
Joshi A, Matange N.
Sequence variation in the active site of mobile colistin resistance proteins is evolutionarily accommodated through inter-domain interactions.
Biochem J  (2024)  481(23)   1741-1755  
[PubMed ID = 39509206]  [RRC reference
Ikeda H, Maeda S.
Characterization of Escherichia coli Persisters from Biofilm Culture: Multiple Dormancy Levels and Multigenerational Memory in Formation.
Microorganisms  (2024)  12(9)  
[PubMed ID = 39338564]  [RRC reference
Culture Condition
Other Remarks sequence (FASTQ format)
https://ddbj.nig.ac.jp/search/entry/sra-run/DRR058068
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