mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,387 | C→T | Q351* (CAA→TAA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 11,648 | G→A | P47S (CCT→TCT) | yaaI ← | DUF2541 domain‑containing protein YaaI |
| RA | 42,234 | G→A | intergenic (‑303/‑169) | caiT ← / → fixA | L‑carnitine:gamma‑butyrobetaine antiporter/putative electron transfer flavoprotein FixA |
| RA | 52,285 | G→A | A49V (GCG→GTG) | rsmA ← | 16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase |
| RA | 52,840 | G→A | R193W (CGG→TGG) | pdxA ← | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| RA | 69,155 | G→A | C298C (TGC→TGT) | araB ← | ribulokinase |
| RA | 76,954 | G→A | R116C (CGC→TGC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 84,121 | G→A | intergenic (‑413/‑247) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 84,430 | G→A | M21I (ATG→ATA) | leuO → | DNA‑binding transcriptional dual regulator LeuO |
| RA | 88,015 | G→A | intergenic (+167/‑13) | ilvH → / → cra | acetolactate synthase/acetohydroxybutanoate synthase, regulatory subunit/DNA‑binding transcriptional dual regulator Cra |
| RA | 94,528 | G→A | A455T (GCT→ACT) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 138,261 | G→A | M393I (ATG→ATA) | cueO → | multicopper oxidase CueO |
| RA | 140,131 | G→A | I365I (ATC→ATT) | gcd ← | quinoprotein glucose dehydrogenase |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| RA | 249,014 | C→T | intergenic (+880/‑1884) | rayT → / → dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 272,651 | C→T | noncoding (72/75 nt) | eyeA → | small RNA EyeA |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 289,676 | G→A | G210G (GGC→GGT) | argF ← | ornithine carbamoyltransferase ArgF |
| RA | 311,172 | C→T | E55E (GAG→GAA) | matA ← | DNA‑binding transcriptional dual regulator MatA |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 317,170 | A→G | intergenic (+717/+556) | insF1 → / ← rclC | IS3 element protein InsF/DUF417 domain‑containing inner membrane protein RclC |
| RA | 321,740 | C→T | P45S (CCT→TCT) | ykgE → | putative lactate utilization oxidoreductase YkgE |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 354,894 | G→A | intergenic (+302/‑28) | prpE → / → codB | propionyl‑CoA synthetase/cytosine transporter |
| RA | 412,670 | G→A | I1028I (ATC→ATT) | sbcC ← | ATP‑dependent structure‑specific DNA nuclease ‑ SbcC subunit |
| RA | 430,773 | G→A | D57N (GAT→AAT) | yajD → | HNH nuclease family protein YajD |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| MC JC | 696,831 | Δ109 bp | [glnU] | [glnU] | |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 761,007 | G→T | G768W (GGG→TGG) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 824,264 | C→T | W78* (TGG→TGA) | ybhP ← | endonuclease/exonuclease/phosphatase domain‑containing protein YbhP |
| RA | 827,789 | C→T | G398D (GGT→GAT) | ybhF ← | ABC exporter ATP binding subunit YbhF |
| RA | 938,553 | G→A | G187D (GGT→GAT) | rarA → | replication‑associated recombination protein A |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,069,743 | C→T | A33T (GCA→ACA) | rutG ← | pyrimidine:H(+) symporter |
| RA | 1,098,620 | T→A | V245V (GTT→GTA) | ghrA → | glyoxylate/hydroxypyruvate reductase A |
| RA | 1,109,216 | C→T | intergenic (‑275/‑119) | opgC ← / → opgG | osmoregulated periplasmic glucans (OPG) biosynthesis protein C/osmoregulated periplasmic glucans biosynthesis protein G |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,162,923 | G→A | G96R (GGG→AGG) | lpoB → | outer membrane lipoprotein ‑ activator of MrcB activity |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,216,559 | C→T | T64I (ACA→ATA) | ariR → | putative two‑component system connector protein AriR |
| RA | 1,255,799 | G→A | Q52* (CAA→TAA) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,382,729 | C→T | Y261Y (TAC→TAT) | ompG → | outer membrane porin G |
| RA | 1,385,261 | C→T | A382V (GCG→GTG) | ycjX → | DUF463 domain‑containing protein YcjX |
| RA | 1,400,310 | C→T | M488I (ATG→ATA) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| RA | 1,403,209 | C→T | R16H (CGC→CAC) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase subunit B |
| RA | 1,422,412 | C→T | L144L (CTG→TTG) | ydaV → | putative ATP‑binding protein YdaV |
| RA | 1,439,093 | C→T | M564I (ATG→ATA) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,447,828 | C→T | L104L (CTG→TTG) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,464,904 | G→A | S145N (AGT→AAT) | paaY → | 2‑hydroxycyclohepta‑1,4,6‑triene‑1‑carboxyl‑CoA thioesterase |
| RA | 1,476,267 | G→A | W375* (TGG→TAG) | ydbD → | DUF2773 domain‑containing protein YdbD |
| RA | 1,476,872 | C→T | H577Y (CAC→TAC) | ydbD → | DUF2773 domain‑containing protein YdbD |
| RA | 1,478,864 | C→T | V213V (GTC→GTT) | ynbB → | putative CDP‑diglyceride synthase |
| RA | 1,482,714 | C→T | P49P (CCG→CCA) | azoR ← | FMN dependent NADH:quinone oxidoreductase |
| RA | 1,487,197 | C→T | intergenic (+234/‑38) | hrpA → / → ydcF | ATP‑dependent 3'‑>5' RNA helicase HrpA/DUF218 domain‑containing protein YdcF |
| RA | 1,504,534 | C→T | S293L (TCA→TTA) | insQ → | putative RNA‑guided DNA endonuclease InsQ |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,742,285 | G→A | L291L (CTG→CTA) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,773,578 | C→T | P356L (CCA→CTA) | ydiN → | putative transporter YdiN |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,964,254 | A→C | V266G (GTC→GGC) | flhA ← | flagellar biosynthesis protein FlhA |
| RA | 2,018,045 | C→T | Q34* (CAG→TAG) | fliJ → | flagellar biosynthesis protein FliJ |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,143,828 | C→T | P188L (CCA→CTA) | dgcE → | putative diguanylate cyclase DgcE |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,176,177 | G→A | Q49* (CAG→TAG) | gatZ ← | putative tagatose‑1,6‑bisphosphate aldolase 2 chaperone |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,254,795 | G→A | A131V (GCG→GTG) | rihB ← | pyrimidine‑specific ribonucleoside hydrolase RihB |
| RA | 2,281,282 | G→A | Q217Q (CAG→CAA) | radD → | putative DNA repair helicase RadD |
| RA | 2,335,464 | G→A | A394V (GCG→GTG) | yfaA ← | DUF2138 domain‑containing protein YfaA |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,444,820 | C→T | A247A (GCG→GCA) | yfcA ← | putative transporter YfcA |
| RA | 2,447,079 | G→A | A132V (GCC→GTC) | aroC ← | chorismate synthase |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,587,666 | C→T | T24T (ACC→ACT) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,724,285 | G→A | R53Q (CGG→CAG) | yfiM → | DUF2279 domain‑containing protein YfiM |
| RA | 2,729,586 | G→A | intergenic (‑142/+30) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA |
| RA | 2,779,623 | C→T | S1035N (AGC→AAC) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,838,241 | G→A | intergenic (‑136/+13) | hydN ← / ← ascG | putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,923,941 | C→T | R58Q (CGA→CAA) | yqcC ← | DUF446 domain‑containing protein YqcC |
| RA | 2,924,310 | C→T | noncoding (215/369 nt) | csrB ← | small regulatory RNA CsrB |
| RA | 2,931,805 | C→T | R251W (CGG→TGG) | ygdG → | flap endonuclease |
| RA | 2,937,524 | C→T | I19I (ATC→ATT) | fucK → | L‑fuculokinase |
| RA | 2,951,111 | C→T | V451M (GTG→ATG) | recD ← | exodeoxyribonuclease V subunit RecD |
| JC JC | 2,955,094 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | coding (905‑910/3543 nt) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,959,564 | C→T | W955* (TGG→TGA) | recC ← | exodeoxyribonuclease V subunit RecC |
| RA | 2,988,926 | C→T | A142V (GCA→GTA) | yqeI → | putative transcriptional regulator YqeI |
| RA | 2,990,642 | C→T | intergenic (‑282/‑626) | yqeK ← / → ygeG | protein YqeK/TPR repeat‑containing putative chaperone YgeG |
| RA | 3,057,584 | G→A | P276L (CCA→CTA) | serA ← | phosphoglycerate dehydrogenase |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,136,616 | C→T | intergenic (‑245/+47) | pitB ← / ← gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| RA | 3,213,461 | G→A | E139K (GAA→AAA) | rpoD → | RNA polymerase sigma factor RpoD |
| RA | 3,219,727 | C→T | D78D (GAC→GAT) | patA → | putrescine aminotransferase |
| RA | 3,231,198 | C→T | H771Y (CAT→TAT) | ygjK → | glycoside hydrolase |
| RA | 3,234,081 | C→T | A22T (GCG→ACG) | higA ← | antitoxin/DNA‑binding transcriptional repressor HigA |
| RA | 3,261,415 | T→G | D335A (GAC→GCC) | tdcE ← | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| RA | 3,271,554 | C→T | V73M (GTG→ATG) | garK ← | glycerate 2‑kinase 1 |
| RA | 3,311,284 | C→T | noncoding (102/216 nt) | sraG → | small regulatory RNA SraG |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,445,166 | A→G | S22P (TCT→CCT) | rpsE ← | 30S ribosomal subunit protein S5 |
| RA | 3,464,134 | C→T | A71A (GCC→GCT) | gspL → | Type II secretion system protein GspL |
| RA | 3,472,093 | C→T | K474K (AAG→AAA) | fusA ← | elongation factor G |
| RA | 3,492,429 | C→T | intergenic (‑132/‑139) | ppiA ← / → tsgA | peptidyl‑prolyl cis‑trans isomerase A/putative transporter TsgA |
| JC | 3,499,823 | Δ5 bp | intergenic (+208/‑83) | yhfL → / → frlA | DUF4223 domain‑containing lipoprotein YhfL/fructoselysine/psicoselysine transporter |
| RA | 3,502,008 | C→T | F247F (TTC→TTT) | frlB → | fructoselysine 6‑phosphate deglycase |
| RA | 3,503,153 | C→T | P272S (CCG→TCG) | frlC → | fructoselysine 3‑epimerase |
| RA | 3,504,390 | C→T | A113A (GCC→GCT) | frlR → | DNA‑binding transcriptional regulator FrlR |
| RA | 3,504,700 | C→T | Q217* (CAG→TAG) | frlR → | DNA‑binding transcriptional regulator FrlR |
| RA | 3,515,404 | C→T | A170A (GCG→GCA) | dam ← | DNA adenine methyltransferase |
| RA | 3,516,543 | C→T | R255H (CGC→CAC) | damX ← | cell division protein DamX |
| RA | 3,516,814 | C→T | E165K (GAA→AAA) | damX ← | cell division protein DamX |
| RA | 3,542,195 | A→G | I597V (ATT→GTT) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,542,270 | C→T | Q622* (CAG→TAG) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,563,542 | G→A | intergenic (+24/+182) | glpD → / ← yzgL | aerobic glycerol 3‑phosphate dehydrogenase/putative uncharacterized protein YzgL |
| RA | 3,622,220 | G→A | R1010Q (CGG→CAG) | rhsB → | rhs element protein RhsB |
| RA | 3,643,244 | G→A | L647L (CTG→TTG) | prlC ← | oligopeptidase A |
| RA | 3,651,471 | G→A | pseudogene (181/746 nt) | yhiS → | putative uncharacterized protein YhiS |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,693,807 | G→A | P477L (CCG→CTG) | bcsA ← | cellulose synthase catalytic subunit |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,743,273 | G→A | G181S (GGC→AGC) | yiaK → | 2,3‑diketo‑L‑gulonate reductase |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,774,117 | G→A | D613N (GAT→AAT) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,778,054 | G→A | G219D (GGT→GAT) | lldP → | lactate/glycolate:H(+) symporter LldP |
| RA | 3,815,589 | G→A | S60S (TCC→TCT) | pyrE ← | orotate phosphoribosyltransferase |
| RA | 3,815,689 | G→A | S27F (TCC→TTC) | pyrE ← | orotate phosphoribosyltransferase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,849,801 | C→T | L112L (TTG→TTA) | uhpB ← | sensory histidine kinase UhpB |
| RA | 3,850,840 | G→A | P85S (CCG→TCG) | ilvN ← | acetohydroxy acid synthase I subunit IlvN |
| RA | 3,861,090 | G→A | A270T (GCC→ACC) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,870,496 | G→A | A412V (GCG→GTG) | dgoT ← | D‑galactonate:H(+) symporter |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,891,585 | C→T | intergenic (+102/‑30) | tnaB → / → mdtL | tryptophan:H(+) symporter TnaB/efflux pump MdtL |
| RA | 3,901,242 | C→T | D327N (GAT→AAT) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
| RA | 3,912,829 | G→A | S280S (AGC→AGT) | glmS ← | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,919,729 | G→A | G43G (GGC→GGT) | atpA ← | ATP synthase F1 complex subunit alpha |
| RA | 3,943,881 | G→A | noncoding (178/2904 nt) | rrlC → | 23S ribosomal RNA |
| RA | 3,944,127 | G→A | noncoding (424/2904 nt) | rrlC → | 23S ribosomal RNA |
| RA | 3,948,492 | G→A | A493V (GCG→GTG) | yifB ← | putative magnesium chelatase YifB |
| RA | 3,957,234 | G→A | A196V (GCC→GTC) | ilvY ← | DNA‑binding transcriptional dual regulator IlvY |
| RA | 3,963,294 | C→T | T312T (ACG→ACA) | gpp ← | guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase |
| RA | 3,975,797 | C→T | R218C (CGT→TGT) | wecE → | dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 3,997,726 | G→A | E182K (GAG→AAG) | yigB → | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,016,421 | G→A | intergenic (‑252/‑10) | ysgA ← / → udp | putative dienelactone hydrolase/uridine phosphorylase |
| RA | 4,038,486 | C→T | noncoding (968/2905 nt) | rrlA → | 23S ribosomal RNA |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,095,424 | G→A | P187S (CCG→TCG) | rhaA ← | L‑rhamnose isomerase |
| RA | 4,110,568 | G→A | A213A (GCG→GCA) | cdh → | CDP‑diacylglycerol diphosphatase |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,115,681 | G→A | intergenic (‑102/+33) | glpX ← / ← glpK | fructose‑1,6‑bisphosphatase 2/glycerol kinase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,194,432 | G→A | A556A (GCC→GCT) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,196,331 | C→G | intergenic (‑232/+1) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,308,783 | G→A | I229I (ATC→ATT) | alsC ← | D‑allose ABC transporter membrane subunit |
| RA | 4,312,125 | G→A | F289F (TTC→TTT) | alsR ← | DNA‑binding transcriptional repressor AlsR |
| RA | 4,318,717 | C→T | A16A (GCG→GCA) | phnK ← | carbon‑phosphorus lyase subunit PhnK |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,331,300 | C→T | L267L (CTG→TTG) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,339,307 | C→T | A405A (GCG→GCA) | adiA ← | arginine decarboxylase, degradative |
| RA | 4,345,284 | C→T | W92* (TGG→TAG) | yjdF ← | DUF2238 domain‑containing inner membrane protein YjdF |
| RA | 4,357,810 | C→T | G270S (GGT→AGT) | cadA ← | lysine decarboxylase 1 |
| RA | 4,368,347 | C→T | intergenic (‑20/‑317) | aspA ← / → fxsA | aspartate ammonia‑lyase/protein FxsA |
| RA | 4,375,493 | C→T | V55V (GTG→GTA) | epmB ← | lysine 2,3‑aminomutase |
| RA | 4,377,568 | C→T | R52H (CGC→CAC) | blc ← | outer membrane lipoprotein Blc |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,394,251 | C→T | H62H (CAC→CAT) | nnr → | NAD(P)HX epimerase/NAD(P)HX dehydratase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,439,165 | C→T | G33D (GGC→GAC) | ytfJ ← | PF09695 family protein YtfJ |
| RA | 4,441,587 | C→T | G197D (GGT→GAT) | msrA ← | methionine sulfoxide reductase A |
| RA | 4,452,269 | C→T | S404S (TCC→TCT) | ytfR → | galactofuranose ABC transporter putative ATP binding subunit |
| RA | 4,459,323 | C→T | intergenic (+12/+577) | tldE → / ← nrdG | metalloprotease subunit TldE/anaerobic ribonucleoside‑triphosphate reductase activating protein |
| RA | 4,487,727 | C→T | A137V (GCG→GTG) | lptG → | lipopolysaccharide transport system protein LptG |
| RA | 4,488,658 | C→T | G469D (GGT→GAT) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,495,234 | C→T | D326N (GAC→AAC) | ahr ← | NADPH‑dependent aldehyde reductase Ahr |
| RA | 4,495,531 | C→T | A227T (GCA→ACA) | ahr ← | NADPH‑dependent aldehyde reductase Ahr |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,523,680 | C→T | A139T (GCA→ACA) | yjhG ← | D‑xylonate dehydratase |
| RA | 4,523,712 | C→T | G128E (GGG→GAG) | yjhG ← | D‑xylonate dehydratase |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196325 | 1211442 | 15118 | 39 [33] | [38] 39 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978503 | 9–776 | 151 [0] | [0] 160 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423824–3424234 | 3424477–3424239 | 6–654 | 39 [38] | [38] 39 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3708467 | 3708621 | 155 | 52 [0] | [32] 41 | [proK] | [proK] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 152 (1.240) | 86/582 | 0.1 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 152 (1.220) | 87/590 | 0.1 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 160 (1.290) | 94/590 | 0.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | = 3708466 | 0 (0.000) | 52 (0.660) | 31/374 | 1.0 | 100% | intergenic (‑761/+150) | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| ? | NC_000913 | 3708635 = | 0 (0.000) | noncoding (58/77 nt) | proK | tRNA‑Pro | |||||