#=GENOME_DIFF 1.0 #=CREATED 15:19:40 10 Oct 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8582_S17_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8582_S17_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8582_S17_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8582_S17_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8582_S17_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 608063959 #=CONVERTED-READS 2055726 #=INPUT-BASES 608205398 #=INPUT-READS 2056208 #=MAPPED-BASES 573062916 #=MAPPED-READS 1938574 SNP 1 237 NC_000913 1387 T SNP 2 238 NC_000913 11648 A SNP 3 239 NC_000913 42234 A SNP 4 241 NC_000913 52285 A SNP 5 242 NC_000913 52840 A SNP 6 244 NC_000913 69155 A SNP 7 245 NC_000913 76954 A SNP 8 246 NC_000913 84121 A SNP 9 247 NC_000913 84430 A SNP 10 248 NC_000913 88015 A SNP 11 249 NC_000913 94528 A SNP 12 250 NC_000913 138261 A SNP 13 251 NC_000913 140131 A SNP 14 253 NC_000913 246747 T SNP 15 254 NC_000913 249014 T DEL 16 540,550 NC_000913 257908 776 SNP 17 255 NC_000913 272651 T SNP 18 256 NC_000913 284535 G SNP 19 257 NC_000913 289676 A SNP 20 258 NC_000913 311172 T SNP 21 259 NC_000913 313543 A SNP 22 260 NC_000913 317170 G SNP 23 261 NC_000913 321740 T SNP 24 262 NC_000913 339935 T SNP 25 263 NC_000913 339941 T SNP 26 264 NC_000913 339958 A SNP 27 268 NC_000913 354894 A SNP 28 269 NC_000913 412670 A SNP 29 271 NC_000913 430773 A SUB 30 272,273 NC_000913 480295 2 AA SNP 31 276 NC_000913 690948 A DEL 32 541,552 NC_000913 696831 109 SNP 33 279 NC_000913 700038 A SNP 34 280 NC_000913 761007 T SUB 35 282,283 NC_000913 809217 2 AG SNP 36 284 NC_000913 824264 T SNP 37 285 NC_000913 827789 T SNP 38 289 NC_000913 938553 A SNP 39 290 NC_000913 968837 A SNP 40 292 NC_000913 1040126 T SNP 41 293 NC_000913 1061935 A SNP 42 294 NC_000913 1069743 T SNP 43 295 NC_000913 1098620 A SNP 44 296 NC_000913 1109216 T SUB 45 298,299 NC_000913 1111727 2 TT SNP 46 300 NC_000913 1162923 A SNP 47 301 NC_000913 1169836 G SNP 48 302 NC_000913 1189980 G SNP 49 303 NC_000913 1196220 T SNP 50 304 NC_000913 1196232 T SNP 51 305 NC_000913 1196245 C SNP 52 306 NC_000913 1196247 G SNP 53 307 NC_000913 1196277 T SNP 54 308 NC_000913 1196280 C SNP 55 309 NC_000913 1196283 G SNP 56 310 NC_000913 1196292 T SNP 57 311 NC_000913 1196304 A SNP 58 312 NC_000913 1196316 A SNP 59 315 NC_000913 1216559 T SNP 60 316 NC_000913 1255799 A SNP 61 319 NC_000913 1301992 T SNP 62 320 NC_000913 1306736 G SNP 63 321 NC_000913 1310770 G SNP 64 322 NC_000913 1337394 G SNP 65 323 NC_000913 1357202 T SNP 66 324 NC_000913 1358859 C SNP 67 325 NC_000913 1382729 T SNP 68 326 NC_000913 1385261 T SNP 69 327 NC_000913 1400310 T SNP 70 328 NC_000913 1403209 T SNP 71 329 NC_000913 1422412 T SNP 72 330 NC_000913 1439093 T SNP 73 331 NC_000913 1447828 T SNP 74 332 NC_000913 1464904 A SNP 75 336 NC_000913 1476267 A SNP 76 337 NC_000913 1476872 T SNP 77 338 NC_000913 1478864 T SNP 78 339 NC_000913 1482714 T SNP 79 340 NC_000913 1487197 T SNP 80 342 NC_000913 1504534 T SNP 81 344 NC_000913 1643679 T SNP 82 345 NC_000913 1652331 C SNP 83 346 NC_000913 1721136 T SNP 84 347 NC_000913 1742285 A SNP 85 349 NC_000913 1773578 T SNP 86 350 NC_000913 1776715 T SNP 87 353 NC_000913 1894839 C SNP 88 354 NC_000913 1964254 C SNP 89 355 NC_000913 2018045 T SNP 90 356 NC_000913 2040433 A SNP 91 358 NC_000913 2143828 T DEL 92 359,360 NC_000913 2173363 2 SNP 93 361 NC_000913 2176177 A SNP 94 362 NC_000913 2188087 C SNP 95 363 NC_000913 2254795 A SNP 96 364 NC_000913 2281282 A SNP 97 373 NC_000913 2335464 A SNP 98 374 NC_000913 2384808 T SNP 99 375 NC_000913 2410419 A SNP 100 376 NC_000913 2444820 T SNP 101 377 NC_000913 2447079 A SNP 102 380 NC_000913 2484827 T DEL 103 544,578 NC_000913 2558699 6790 SNP 104 382 NC_000913 2587666 T SNP 105 384 NC_000913 2724285 A SNP 106 385 NC_000913 2729586 A SNP 107 388 NC_000913 2779623 T SNP 108 389 NC_000913 2838241 A MOB 109 584,585 NC_000913 2913392 IS2 -1 5 SNP 110 391 NC_000913 2923941 T SNP 111 392 NC_000913 2924310 T SNP 112 393 NC_000913 2931805 T SNP 113 394 NC_000913 2937524 T SNP 114 395 NC_000913 2951111 T MOB 115 576,577 NC_000913 2955094 IS186 1 6 del_end=1 del_start=1 SNP 116 396 NC_000913 2959564 T SNP 117 397 NC_000913 2988926 T SNP 118 399 NC_000913 2990642 T SNP 119 404 NC_000913 3057584 A SUB 120 405,406 NC_000913 3088010 2 TT SNP 121 407 NC_000913 3136616 T SNP 122 411 NC_000913 3213461 A SNP 123 412 NC_000913 3219727 T SNP 124 415 NC_000913 3231198 T SNP 125 416 NC_000913 3234081 T SNP 126 417 NC_000913 3261415 G SNP 127 419 NC_000913 3271554 T SNP 128 420 NC_000913 3311284 T SUB 129 421,422 NC_000913 3336411 2 AT SNP 130 423 NC_000913 3388041 G SNP 131 426 NC_000913 3436697 A SNP 132 427 NC_000913 3445166 G SNP 133 428 NC_000913 3464134 T SNP 134 430 NC_000913 3472093 T SNP 135 431 NC_000913 3492429 T DEL 136 596 NC_000913 3499823 5 SNP 137 432 NC_000913 3502008 T SNP 138 433 NC_000913 3503153 T SNP 139 434 NC_000913 3504390 T SNP 140 435 NC_000913 3504700 T SNP 141 436 NC_000913 3515404 T SNP 142 437 NC_000913 3516543 T SNP 143 438 NC_000913 3516814 T SNP 144 439 NC_000913 3542195 G SNP 145 440 NC_000913 3542270 T INS 146 441 NC_000913 3560455 G SNP 147 442 NC_000913 3563542 A SNP 148 443 NC_000913 3622220 A SNP 149 444 NC_000913 3643244 A SNP 150 445 NC_000913 3651471 A SNP 151 446 NC_000913 3682515 T SNP 152 447 NC_000913 3693807 A SNP 153 448 NC_000913 3707947 A SNP 154 449 NC_000913 3725176 G SNP 155 450 NC_000913 3743273 A SNP 156 451 NC_000913 3771979 T SNP 157 452 NC_000913 3774117 A SNP 158 453 NC_000913 3778054 A SNP 159 454 NC_000913 3815589 A SNP 160 455 NC_000913 3815689 A INS 161 456 NC_000913 3815883 C INS 162 604 NC_000913 3822651 CAGGAT repeat_length=6 repeat_new_copies=2 repeat_ref_copies=1 repeat_seq=CAGGAT SNP 163 457 NC_000913 3823162 T SNP 164 459 NC_000913 3849801 T SNP 165 460 NC_000913 3850840 A SNP 166 461 NC_000913 3861090 A SNP 167 462 NC_000913 3869637 A SNP 168 463 NC_000913 3870496 A SNP 169 464 NC_000913 3878536 A SNP 170 465 NC_000913 3891585 T SNP 171 466 NC_000913 3901242 T SNP 172 468 NC_000913 3912829 A SNP 173 469 NC_000913 3919729 A SNP 174 472 NC_000913 3943881 A SNP 175 473 NC_000913 3944127 A SNP 176 474 NC_000913 3948492 A SNP 177 475 NC_000913 3957234 A SNP 178 476 NC_000913 3963294 T SNP 179 478 NC_000913 3975797 T SNP 180 479 NC_000913 3993531 C SNP 181 480 NC_000913 3996049 A SNP 182 481 NC_000913 3997726 A SNP 183 482 NC_000913 4011802 T SNP 184 483 NC_000913 4016421 A SNP 185 484 NC_000913 4038486 T SNP 186 485 NC_000913 4084903 G SNP 187 486 NC_000913 4092703 G SNP 188 487 NC_000913 4095424 A SNP 189 488 NC_000913 4110568 A SNP 190 489 NC_000913 4113851 A SNP 191 490 NC_000913 4115681 A SNP 192 491 NC_000913 4143377 T SNP 193 492 NC_000913 4161248 T SNP 194 493 NC_000913 4164123 G SNP 195 494 NC_000913 4193996 G SNP 196 495 NC_000913 4194432 A SNP 197 496 NC_000913 4196331 G SNP 198 497 NC_000913 4215347 A SNP 199 498 NC_000913 4223638 C INS 200 499 NC_000913 4282332 A repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=A SUB 201 500,501 NC_000913 4293781 2 AT INS 202 504,505 NC_000913 4296381 GC SNP 203 506 NC_000913 4308783 A SNP 204 507 NC_000913 4312125 A SNP 205 508 NC_000913 4318717 T SNP 206 509 NC_000913 4325644 T SNP 207 510 NC_000913 4331300 T SNP 208 511 NC_000913 4339307 T SNP 209 512 NC_000913 4345284 T SNP 210 513 NC_000913 4357810 T SNP 211 515 NC_000913 4368347 T SNP 212 516 NC_000913 4375493 T SNP 213 517 NC_000913 4377568 T SNP 214 518 NC_000913 4392997 A SNP 215 519 NC_000913 4393552 A SNP 216 520 NC_000913 4394251 T SNP 217 521 NC_000913 4396373 T SNP 218 522 NC_000913 4396772 C SNP 219 523 NC_000913 4425688 A SNP 220 524 NC_000913 4425696 A SNP 221 525 NC_000913 4439165 T SNP 222 526 NC_000913 4441587 T SNP 223 527 NC_000913 4452269 T SNP 224 528 NC_000913 4459323 T SNP 225 529 NC_000913 4487727 T SNP 226 530 NC_000913 4488658 T SNP 227 531 NC_000913 4495234 T SNP 228 532 NC_000913 4495531 T SNP 229 533 NC_000913 4510238 G SNP 230 534 NC_000913 4523680 T SNP 231 535 NC_000913 4523712 T SNP 232 536 NC_000913 4532409 G SNP 233 537 NC_000913 4546601 T SNP 234 538 NC_000913 4636925 C SNP 235 539 NC_000913 4638240 A RA 236 . NC_000913 36 0 C A bias_e_value=0.744274 bias_p_value=1.60347e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=360.8 fisher_strand_p_value=8.17154e-09 frequency=2.222e-01 ks_quality_p_value=1 major_base=C major_cov=85/41 major_frequency=7.778e-01 minor_base=A minor_cov=5/31 new_cov=5/31 polymorphism_frequency=2.222e-01 polymorphism_score=36.7 prediction=polymorphism ref_cov=85/41 total_cov=90/72 RA 237 . NC_000913 1387 0 C T bias_e_value=3279730 bias_p_value=0.706586 consensus_score=380.7 fisher_strand_p_value=0.339806 frequency=1 ks_quality_p_value=1 major_base=T major_cov=68/34 major_frequency=9.903e-01 minor_base=G minor_cov=0/1 new_cov=68/34 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/35 RA 238 . NC_000913 11648 0 G A consensus_score=574.2 frequency=1 major_base=A major_cov=80/80 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=80/80 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=80/80 RA 239 . NC_000913 42234 0 G A consensus_score=599.1 frequency=1 major_base=A major_cov=92/84 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/84 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/84 RA 240 . NC_000913 42395 0 G T bias_e_value=0.0638769 bias_p_value=1.37617e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=224.2 fisher_strand_p_value=6.19852e-10 frequency=2.958e-01 ks_quality_p_value=1 major_base=G major_cov=48/52 major_frequency=7.042e-01 minor_base=T minor_cov=0/42 new_cov=0/42 polymorphism_frequency=2.958e-01 polymorphism_score=11.2 prediction=polymorphism ref_cov=48/52 total_cov=48/94 RA 241 . NC_000913 52285 0 G A consensus_score=355.9 frequency=1 major_base=A major_cov=49/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/52 RA 242 . NC_000913 52840 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=425.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=65/56 major_frequency=9.918e-01 minor_base=C minor_cov=1/0 new_cov=65/56 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/56 RA 243 . NC_000913 58065 0 C A bias_e_value=3.60259e-05 bias_p_value=7.76144e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=143.5 fisher_strand_p_value=2.58866e-13 frequency=3.846e-01 ks_quality_p_value=1 major_base=C major_cov=28/44 major_frequency=6.154e-01 minor_base=A minor_cov=45/0 new_cov=45/0 polymorphism_frequency=3.846e-01 polymorphism_score=36.8 prediction=polymorphism ref_cov=28/44 total_cov=73/44 RA 244 . NC_000913 69155 0 G A consensus_score=289.9 frequency=1 major_base=A major_cov=35/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/44 RA 245 . NC_000913 76954 0 G A consensus_score=288.9 frequency=1 major_base=A major_cov=35/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/43 RA 246 . NC_000913 84121 0 G A consensus_score=633.9 frequency=1 major_base=A major_cov=81/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=81/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=81/94 RA 247 . NC_000913 84430 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=449.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=63/58 major_frequency=9.918e-01 minor_base=C minor_cov=1/0 new_cov=63/58 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/58 RA 248 . NC_000913 88015 0 G A bias_e_value=4636010 bias_p_value=0.998785 consensus_score=470.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.95111 major_base=A major_cov=49/84 major_frequency=9.852e-01 minor_base=G minor_cov=1/1 new_cov=49/84 polymorphism_frequency=9.852e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/1 total_cov=50/85 RA 249 . NC_000913 94528 0 G A bias_e_value=2660440 bias_p_value=0.573167 consensus_score=347.8 fisher_strand_p_value=0.233516 frequency=1 ks_quality_p_value=1 major_base=A major_cov=54/49 major_frequency=9.810e-01 minor_base=G minor_cov=0/2 new_cov=54/49 polymorphism_frequency=9.810e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=54/51 RA 250 . NC_000913 138261 0 G A consensus_score=372.2 frequency=1 major_base=A major_cov=65/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=65/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/45 RA 251 . NC_000913 140131 0 G A consensus_score=494.9 frequency=1 major_base=A major_cov=79/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=79/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=79/62 RA 252 . NC_000913 141849 0 C A bias_e_value=0.000525081 bias_p_value=1.13124e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=284.0 fisher_strand_p_value=4.15805e-12 frequency=2.667e-01 ks_quality_p_value=1 major_base=C major_cov=42/68 major_frequency=7.333e-01 minor_base=A minor_cov=39/1 new_cov=39/1 polymorphism_frequency=2.667e-01 polymorphism_score=16.9 prediction=polymorphism ref_cov=42/68 total_cov=81/70 RA 253 . NC_000913 246747 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=505.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=68/72 major_frequency=9.929e-01 minor_base=G minor_cov=0/1 new_cov=68/72 polymorphism_frequency=9.929e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=68/73 RA 254 . NC_000913 249014 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=293.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99975 major_base=T major_cov=35/54 major_frequency=9.889e-01 minor_base=G minor_cov=0/1 new_cov=35/54 polymorphism_frequency=9.889e-01 polymorphism_score=-6.9 prediction=consensus ref_cov=0/0 total_cov=35/55 RA 255 . NC_000913 272651 0 C T bias_e_value=3669330 bias_p_value=0.790522 consensus_score=368.6 fisher_strand_p_value=0.427184 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/59 major_frequency=9.903e-01 minor_base=C minor_cov=1/0 new_cov=43/59 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=44/59 RA 256 . NC_000913 284535 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=191.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=19/37 major_frequency=9.825e-01 minor_base=A minor_cov=0/1 new_cov=19/37 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=19/38 RA 257 . NC_000913 289676 0 G A bias_e_value=3761130 bias_p_value=0.810301 consensus_score=286.3 fisher_strand_p_value=0.45122 frequency=1 ks_quality_p_value=1 major_base=A major_cov=36/45 major_frequency=9.878e-01 minor_base=C minor_cov=1/0 new_cov=36/45 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/45 RA 258 . NC_000913 311172 0 C T consensus_score=379.9 frequency=1 major_base=T major_cov=45/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/65 RA 259 . NC_000913 313543 0 G A consensus_score=547.1 frequency=1 major_base=A major_cov=85/76 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=85/76 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=85/76 RA 260 . NC_000913 317170 0 A G consensus_score=494.2 frequency=1 major_base=G major_cov=67/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/67 RA 261 . NC_000913 321740 0 C T bias_e_value=3660150 bias_p_value=0.788544 consensus_score=579.1 fisher_strand_p_value=0.425 frequency=1 ks_quality_p_value=0.999686 major_base=T major_cov=67/92 major_frequency=9.938e-01 minor_base=C minor_cov=1/0 new_cov=67/92 polymorphism_frequency=9.938e-01 polymorphism_score=-6.4 prediction=consensus ref_cov=1/0 total_cov=68/92 RA 262 . NC_000913 339935 0 C T consensus_score=108.4 frequency=1 major_base=T major_cov=15/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/25 RA 263 . NC_000913 339941 0 C T consensus_score=105.7 frequency=1 major_base=T major_cov=14/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/25 RA 264 . NC_000913 339958 0 G A bias_e_value=3600920 bias_p_value=0.775784 consensus_score=104.0 fisher_strand_p_value=0.410256 frequency=1 ks_quality_p_value=1 major_base=A major_cov=15/23 major_frequency=9.744e-01 minor_base=C minor_cov=1/0 new_cov=15/23 polymorphism_frequency=9.744e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/23 RA 265 . NC_000913 339979 0 G A bias_e_value=2438340 bias_p_value=0.525316 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.1 fisher_strand_p_value=0.202137 frequency=5.278e-01 ks_quality_p_value=1 major_base=A major_cov=11/8 major_frequency=5.278e-01 minor_base=G minor_cov=6/11 new_cov=11/8 polymorphism_frequency=5.278e-01 polymorphism_score=45.5 prediction=polymorphism ref_cov=6/11 total_cov=17/19 RA 266 . NC_000913 339986 0 G A bias_e_value=3928830 bias_p_value=0.846429 consensus_reject=FREQUENCY_CUTOFF consensus_score=19.7 fisher_strand_p_value=0.499792 frequency=5.833e-01 ks_quality_p_value=1 major_base=A major_cov=12/9 major_frequency=5.833e-01 minor_base=G minor_cov=6/9 new_cov=12/9 polymorphism_frequency=5.833e-01 polymorphism_score=40.7 prediction=polymorphism ref_cov=6/9 total_cov=18/18 RA 267 . NC_000913 339992 0 C . bias_e_value=3038980 bias_p_value=0.654718 consensus_reject=FREQUENCY_CUTOFF consensus_score=65.4 fisher_strand_p_value=0.305267 frequency=3.889e-01 ks_quality_p_value=0.965264 major_base=C major_cov=13/9 major_frequency=6.111e-01 minor_base=. minor_cov=5/9 new_cov=5/9 polymorphism_frequency=3.889e-01 polymorphism_score=59.6 prediction=polymorphism ref_cov=13/9 total_cov=18/18 RA 268 . NC_000913 354894 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=441.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=79/49 major_frequency=9.922e-01 minor_base=C minor_cov=1/0 new_cov=79/49 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=81/49 RA 269 . NC_000913 412670 0 G A consensus_score=442.8 frequency=1 major_base=A major_cov=61/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/59 RA 270 . NC_000913 430299 0 C A bias_e_value=2.39045 bias_p_value=5.15e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=291.2 fisher_strand_p_value=2.80029e-08 frequency=2.295e-01 ks_quality_p_value=1 major_base=C major_cov=44/50 major_frequency=7.705e-01 minor_base=A minor_cov=28/0 new_cov=28/0 polymorphism_frequency=2.295e-01 polymorphism_score=15.8 prediction=polymorphism ref_cov=44/50 total_cov=72/50 RA 271 . NC_000913 430773 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=472.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/74 major_frequency=9.851e-01 minor_base=G minor_cov=1/1 new_cov=58/74 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=59/75 RA 272 . NC_000913 480295 0 G A consensus_score=593.5 frequency=1 major_base=A major_cov=77/88 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=77/88 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=77/88 RA 273 . NC_000913 480296 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=597.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=76/87 major_frequency=9.879e-01 minor_base=G minor_cov=1/1 new_cov=76/87 polymorphism_frequency=9.879e-01 polymorphism_score=NA prediction=consensus ref_cov=1/1 total_cov=77/88 RA 274 . NC_000913 510209 0 C A bias_e_value=75.2333 bias_p_value=1.62083e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=171.7 fisher_strand_p_value=1.10117e-06 frequency=2.553e-01 ks_quality_p_value=1 major_base=C major_cov=34/36 major_frequency=7.447e-01 minor_base=A minor_cov=24/0 new_cov=24/0 polymorphism_frequency=2.553e-01 polymorphism_score=11.9 prediction=polymorphism ref_cov=34/36 total_cov=58/36 RA 275 . NC_000913 571586 0 G T bias_e_value=1.72219e-09 bias_p_value=3.71029e-16 consensus_reject=FREQUENCY_CUTOFF consensus_score=498.4 fisher_strand_p_value=9.22389e-18 frequency=2.248e-01 ks_quality_p_value=1 major_base=G major_cov=106/63 major_frequency=7.752e-01 minor_base=T minor_cov=0/49 new_cov=0/49 polymorphism_frequency=2.248e-01 polymorphism_score=18.4 prediction=polymorphism ref_cov=106/63 total_cov=107/112 RA 276 . NC_000913 690948 0 G A consensus_score=394.4 frequency=1 major_base=A major_cov=41/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/68 RA 277 . NC_000913 696890 0 A T bias_e_value=4202710 bias_p_value=0.905433 consensus_reject=FREQUENCY_CUTOFF consensus_score=18.4 deleted=1 fisher_strand_p_value=1 frequency=2.857e-01 ks_quality_p_value=0.597928 major_base=A major_cov=6/4 major_frequency=7.143e-01 minor_base=T minor_cov=3/1 new_cov=3/1 polymorphism_frequency=2.857e-01 polymorphism_score=10.1 prediction=polymorphism ref_cov=6/4 total_cov=9/6 RA 278 . NC_000913 696902 0 T A bias_e_value=4241490 bias_p_value=0.913789 consensus_reject=FREQUENCY_CUTOFF consensus_score=48.5 deleted=1 fisher_strand_p_value=0.614625 frequency=2.000e-01 ks_quality_p_value=1 major_base=T major_cov=9/11 major_frequency=8.000e-01 minor_base=A minor_cov=1/4 new_cov=1/4 polymorphism_frequency=2.000e-01 polymorphism_score=11.1 prediction=polymorphism ref_cov=9/11 total_cov=10/16 RA 279 . NC_000913 700038 0 G A consensus_score=349.6 frequency=1 major_base=A major_cov=62/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/40 RA 280 . NC_000913 761007 0 G T consensus_score=386.1 frequency=1 major_base=T major_cov=61/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/43 RA 281 . NC_000913 799484 0 C A bias_e_value=0.0516365 bias_p_value=1.11246e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=148.8 fisher_strand_p_value=4.96097e-10 frequency=3.370e-01 ks_quality_p_value=1 major_base=C major_cov=23/38 major_frequency=6.630e-01 minor_base=A minor_cov=31/0 new_cov=31/0 polymorphism_frequency=3.370e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=23/38 total_cov=54/38 RA 282 . NC_000913 809217 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=342.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=62/38 major_frequency=9.901e-01 minor_base=C minor_cov=1/0 new_cov=62/38 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=64/38 RA 283 . NC_000913 809218 0 A G bias_e_value=3436670 bias_p_value=0.740399 consensus_score=379.6 fisher_strand_p_value=0.372549 frequency=1 ks_quality_p_value=1 major_base=G major_cov=64/37 major_frequency=9.902e-01 minor_base=A minor_cov=0/1 new_cov=64/37 polymorphism_frequency=9.902e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=64/38 RA 284 . NC_000913 824264 0 C T consensus_score=402.1 frequency=1 major_base=T major_cov=84/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/31 RA 285 . NC_000913 827789 0 C T consensus_score=469.6 frequency=1 major_base=T major_cov=71/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/57 RA 286 . NC_000913 847955 0 G A bias_e_value=1.62951e-10 bias_p_value=3.51062e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=252.5 fisher_strand_p_value=8.23297e-19 frequency=2.979e-01 ks_quality_p_value=1 major_base=G major_cov=83/49 major_frequency=7.021e-01 minor_base=A minor_cov=0/56 new_cov=0/56 polymorphism_frequency=2.979e-01 polymorphism_score=67.8 prediction=polymorphism ref_cov=83/49 total_cov=83/105 RA 287 . NC_000913 848028 0 G T bias_e_value=9.49983e-05 bias_p_value=2.04665e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=361.0 fisher_strand_p_value=7.06257e-13 frequency=2.456e-01 ks_quality_p_value=1 major_base=G major_cov=73/56 major_frequency=7.544e-01 minor_base=T minor_cov=0/42 new_cov=0/42 polymorphism_frequency=2.456e-01 polymorphism_score=13.0 prediction=polymorphism ref_cov=73/56 total_cov=73/98 RA 288 . NC_000913 866319 0 C A bias_e_value=1.10666 bias_p_value=2.3842e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.5 fisher_strand_p_value=1.24149e-08 frequency=3.033e-01 ks_quality_p_value=1 major_base=C major_cov=45/40 major_frequency=6.967e-01 minor_base=A minor_cov=37/0 new_cov=37/0 polymorphism_frequency=3.033e-01 polymorphism_score=13.8 prediction=polymorphism ref_cov=45/40 total_cov=82/41 RA 289 . NC_000913 938553 0 G A consensus_score=410.4 frequency=1 major_base=A major_cov=55/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/62 RA 290 . NC_000913 968837 0 G A consensus_score=328.2 frequency=1 major_base=A major_cov=60/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/39 RA 291 . NC_000913 1015488 0 C A bias_e_value=0.00829251 bias_p_value=1.78654e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=289.2 fisher_strand_p_value=7.34149e-11 frequency=2.849e-01 ks_quality_p_value=1 major_base=C major_cov=67/56 major_frequency=7.151e-01 minor_base=A minor_cov=49/0 new_cov=49/0 polymorphism_frequency=2.849e-01 polymorphism_score=13.1 prediction=polymorphism ref_cov=67/56 total_cov=116/56 RA 292 . NC_000913 1040126 0 G T consensus_score=445.7 frequency=1 major_base=T major_cov=56/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/73 RA 293 . NC_000913 1061935 0 G A consensus_score=371.8 frequency=1 major_base=A major_cov=71/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/39 RA 294 . NC_000913 1069743 0 C T consensus_score=372.7 frequency=1 major_base=T major_cov=43/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/66 RA 295 . NC_000913 1098620 0 T A consensus_score=466.5 frequency=1 major_base=A major_cov=56/69 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/69 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/69 RA 296 . NC_000913 1109216 0 C T consensus_score=604.6 frequency=1 major_base=T major_cov=91/71 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/71 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/71 RA 297 . NC_000913 1109632 0 G A bias_e_value=2.01781e-05 bias_p_value=4.34719e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=313.6 fisher_strand_p_value=1.42149e-13 frequency=2.075e-01 ks_quality_p_value=1 major_base=G major_cov=84/42 major_frequency=7.925e-01 minor_base=A minor_cov=0/33 new_cov=0/33 polymorphism_frequency=2.075e-01 polymorphism_score=34.8 prediction=polymorphism ref_cov=84/42 total_cov=84/75 RA 298 . NC_000913 1111727 0 C T consensus_score=437.0 frequency=1 major_base=T major_cov=60/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/59 RA 299 . NC_000913 1111728 0 C T consensus_score=423.1 frequency=1 major_base=T major_cov=60/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/59 RA 300 . NC_000913 1162923 0 G A consensus_score=272.4 frequency=1 major_base=A major_cov=30/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/45 RA 301 . NC_000913 1169836 0 A G consensus_score=390.2 frequency=1 major_base=G major_cov=39/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/67 RA 302 . NC_000913 1189980 0 A G consensus_score=410.4 frequency=1 major_base=G major_cov=56/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/53 RA 303 . NC_000913 1196220 0 C T consensus_score=193.0 frequency=1 major_base=T major_cov=42/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/29 RA 304 . NC_000913 1196232 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=189.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=41/27 major_frequency=9.855e-01 minor_base=C minor_cov=1/0 new_cov=41/27 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=42/27 RA 305 . NC_000913 1196245 0 T C consensus_score=190.1 frequency=1 major_base=C major_cov=38/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/26 RA 306 . NC_000913 1196247 0 A G consensus_score=184.5 frequency=1 major_base=G major_cov=38/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/26 RA 307 . NC_000913 1196277 0 C T consensus_score=145.9 frequency=1 major_base=T major_cov=37/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/18 RA 308 . NC_000913 1196280 0 G C consensus_score=143.6 frequency=1 major_base=C major_cov=37/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/18 RA 309 . NC_000913 1196283 0 A G consensus_score=155.1 frequency=1 major_base=G major_cov=37/18 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/18 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/18 RA 310 . NC_000913 1196292 0 C T consensus_score=141.9 frequency=1 major_base=T major_cov=37/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/17 RA 311 . NC_000913 1196304 0 G A consensus_score=110.5 frequency=1 major_base=A major_cov=31/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/17 RA 312 . NC_000913 1196316 0 T A consensus_score=102.4 frequency=1 major_base=A major_cov=26/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/17 RA 313 . NC_000913 1196325 0 A G consensus_score=75.3 deleted=1 frequency=1 major_base=G major_cov=18/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=18/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=18/15 RA 314 . NC_000913 1196352 0 C A consensus_score=49.5 deleted=1 frequency=1 major_base=A major_cov=13/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=13/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=13/11 RA 315 . NC_000913 1216559 0 C T bias_e_value=3761800 bias_p_value=0.810443 consensus_score=570.9 fisher_strand_p_value=0.452941 frequency=1 ks_quality_p_value=0.996595 major_base=T major_cov=93/76 major_frequency=9.941e-01 minor_base=G minor_cov=0/1 new_cov=93/76 polymorphism_frequency=9.941e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=94/77 RA 316 . NC_000913 1255799 0 G A consensus_score=537.4 frequency=1 major_base=A major_cov=69/80 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/80 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/80 RA 317 . NC_000913 1272420 0 C A bias_e_value=0.0296588 bias_p_value=6.3897e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=243.0 fisher_strand_p_value=2.77762e-10 frequency=2.583e-01 ks_quality_p_value=1 major_base=C major_cov=36/53 major_frequency=7.417e-01 minor_base=A minor_cov=31/0 new_cov=31/0 polymorphism_frequency=2.583e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=36/53 total_cov=67/53 RA 318 . NC_000913 1286870 0 C A bias_e_value=1504760 bias_p_value=0.324187 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.6 fisher_strand_p_value=0.0973782 frequency=2.361e-01 ks_quality_p_value=1 major_base=C major_cov=22/33 major_frequency=7.639e-01 minor_base=A minor_cov=11/6 new_cov=11/6 polymorphism_frequency=2.361e-01 polymorphism_score=22.1 prediction=polymorphism ref_cov=22/33 total_cov=33/39 RA 319 . NC_000913 1301992 0 A T consensus_score=431.0 frequency=1 major_base=T major_cov=51/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/75 RA 320 . NC_000913 1306736 0 T G consensus_score=379.6 frequency=1 major_base=G major_cov=67/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/33 RA 321 . NC_000913 1310770 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=459.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=78/45 major_frequency=9.919e-01 minor_base=A minor_cov=1/0 new_cov=78/45 polymorphism_frequency=9.919e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=79/46 RA 322 . NC_000913 1337394 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=392.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=65/41 major_frequency=9.907e-01 minor_base=A minor_cov=1/0 new_cov=65/41 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=66/41 RA 323 . NC_000913 1357202 0 C T consensus_score=408.6 frequency=1 major_base=T major_cov=56/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/61 RA 324 . NC_000913 1358859 0 T C bias_e_value=3876390 bias_p_value=0.835131 consensus_score=336.5 fisher_strand_p_value=0.483871 frequency=1 ks_quality_p_value=1 major_base=C major_cov=44/48 major_frequency=9.892e-01 minor_base=T minor_cov=1/0 new_cov=44/48 polymorphism_frequency=9.892e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=45/48 RA 325 . NC_000913 1382729 0 C T bias_e_value=3742770 bias_p_value=0.806343 consensus_score=441.5 fisher_strand_p_value=0.446281 frequency=1 ks_quality_p_value=1 major_base=T major_cov=67/53 major_frequency=9.917e-01 minor_base=G minor_cov=0/1 new_cov=67/53 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=67/55 RA 326 . NC_000913 1385261 0 C T consensus_score=335.8 frequency=1 major_base=T major_cov=56/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/35 RA 327 . NC_000913 1400310 0 C T bias_e_value=3674790 bias_p_value=0.791699 consensus_score=436.0 fisher_strand_p_value=0.428571 frequency=1 ks_quality_p_value=1 major_base=T major_cov=72/53 major_frequency=9.921e-01 minor_base=G minor_cov=0/1 new_cov=72/53 polymorphism_frequency=9.921e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=72/54 RA 328 . NC_000913 1403209 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=328.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=46/47 major_frequency=9.894e-01 minor_base=C minor_cov=0/1 new_cov=46/47 polymorphism_frequency=9.894e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=46/48 RA 329 . NC_000913 1422412 0 C T consensus_score=416.4 frequency=1 major_base=T major_cov=49/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/66 RA 330 . NC_000913 1439093 0 C T consensus_score=192.5 frequency=1 major_base=T major_cov=30/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/27 RA 331 . NC_000913 1447828 0 C T consensus_score=172.5 frequency=1 major_base=T major_cov=27/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/21 RA 332 . NC_000913 1464904 0 G A consensus_score=232.7 frequency=1 major_base=A major_cov=45/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/27 RA 333 . NC_000913 1466345 0 T C bias_e_value=3780690 bias_p_value=0.814513 consensus_reject=FREQUENCY_CUTOFF consensus_score=90.4 fisher_strand_p_value=0.456553 frequency=2.045e-01 ks_quality_p_value=1 major_base=T major_cov=16/19 major_frequency=7.955e-01 minor_base=C minor_cov=6/3 new_cov=6/3 polymorphism_frequency=2.045e-01 polymorphism_score=11.5 prediction=polymorphism ref_cov=16/19 total_cov=22/23 RA 334 . NC_000913 1466432 0 A G bias_e_value=3012530 bias_p_value=0.649021 consensus_reject=FREQUENCY_CUTOFF consensus_score=66.3 fisher_strand_p_value=0.29003 frequency=2.683e-01 ks_quality_p_value=1 major_base=A major_cov=18/12 major_frequency=7.317e-01 minor_base=G minor_cov=4/7 new_cov=4/7 polymorphism_frequency=2.683e-01 polymorphism_score=16.3 prediction=polymorphism ref_cov=18/12 total_cov=22/19 RA 335 . NC_000913 1466438 0 T G bias_e_value=3824870 bias_p_value=0.824032 consensus_reject=FREQUENCY_CUTOFF consensus_score=70.2 fisher_strand_p_value=0.468904 frequency=2.439e-01 ks_quality_p_value=1 major_base=T major_cov=18/13 major_frequency=7.561e-01 minor_base=G minor_cov=4/6 new_cov=4/6 polymorphism_frequency=2.439e-01 polymorphism_score=13.3 prediction=polymorphism ref_cov=18/13 total_cov=23/19 RA 336 . NC_000913 1476267 0 G A consensus_score=288.3 frequency=1 major_base=A major_cov=42/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/42 RA 337 . NC_000913 1476872 0 C T consensus_score=391.0 frequency=1 major_base=T major_cov=49/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/57 RA 338 . NC_000913 1478864 0 C T consensus_score=350.5 frequency=1 major_base=T major_cov=54/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/42 RA 339 . NC_000913 1482714 0 C T consensus_score=320.2 frequency=1 major_base=T major_cov=60/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/32 RA 340 . NC_000913 1487197 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=340.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/57 major_frequency=9.902e-01 minor_base=G minor_cov=0/1 new_cov=44/57 polymorphism_frequency=9.902e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=44/59 RA 341 . NC_000913 1502772 0 G A bias_e_value=2838.3 bias_p_value=0.000611484 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.2 fisher_strand_p_value=5.67396e-05 frequency=2.048e-01 ks_quality_p_value=1 major_base=G major_cov=40/26 major_frequency=7.952e-01 minor_base=A minor_cov=1/16 new_cov=1/16 polymorphism_frequency=2.048e-01 polymorphism_score=13.5 prediction=polymorphism ref_cov=40/26 total_cov=41/43 RA 342 . NC_000913 1504534 0 C T consensus_score=309.1 frequency=1 major_base=T major_cov=30/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/56 RA 343 . NC_000913 1637686 0 C T bias_e_value=125.201 bias_p_value=2.69733e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=236.8 fisher_strand_p_value=1.90329e-06 frequency=2.030e-01 ks_quality_p_value=1 major_base=C major_cov=52/54 major_frequency=7.970e-01 minor_base=T minor_cov=26/1 new_cov=26/1 polymorphism_frequency=2.030e-01 polymorphism_score=14.2 prediction=polymorphism ref_cov=52/54 total_cov=83/55 RA 344 . NC_000913 1643679 0 A T consensus_score=311.4 frequency=1 major_base=T major_cov=37/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/50 RA 345 . NC_000913 1652331 0 T C consensus_score=374.0 frequency=1 major_base=C major_cov=48/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/52 RA 346 . NC_000913 1721136 0 C T consensus_score=358.7 frequency=1 major_base=T major_cov=35/76 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/76 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/76 RA 347 . NC_000913 1742285 0 G A consensus_score=382.3 frequency=1 major_base=A major_cov=33/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/73 RA 348 . NC_000913 1756353 0 C A bias_e_value=0.197728 bias_p_value=4.25986e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=201.9 fisher_strand_p_value=2.02689e-09 frequency=2.750e-01 ks_quality_p_value=1 major_base=C major_cov=40/47 major_frequency=7.250e-01 minor_base=A minor_cov=33/0 new_cov=33/0 polymorphism_frequency=2.750e-01 polymorphism_score=10.3 prediction=polymorphism ref_cov=40/47 total_cov=73/47 RA 349 . NC_000913 1773578 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=489.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999583 major_base=T major_cov=82/56 major_frequency=9.928e-01 minor_base=C minor_cov=1/0 new_cov=82/56 polymorphism_frequency=9.928e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=1/0 total_cov=83/56 RA 350 . NC_000913 1776715 0 A T consensus_score=436.6 frequency=1 major_base=T major_cov=67/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/58 RA 351 . NC_000913 1812509 0 G T bias_e_value=2.20878e-09 bias_p_value=4.75861e-16 consensus_reject=FREQUENCY_CUTOFF consensus_score=405.7 fisher_strand_p_value=1.19056e-17 frequency=2.419e-01 ks_quality_p_value=1 major_base=G major_cov=94/47 major_frequency=7.581e-01 minor_base=T minor_cov=0/45 new_cov=0/45 polymorphism_frequency=2.419e-01 polymorphism_score=17.0 prediction=polymorphism ref_cov=94/47 total_cov=94/92 RA 352 . NC_000913 1823018 0 C A bias_e_value=1.093 bias_p_value=2.35476e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=179.8 fisher_strand_p_value=1.22532e-08 frequency=3.197e-01 ks_quality_p_value=1 major_base=C major_cov=45/38 major_frequency=6.803e-01 minor_base=A minor_cov=39/0 new_cov=39/0 polymorphism_frequency=3.197e-01 polymorphism_score=11.8 prediction=polymorphism ref_cov=45/38 total_cov=84/38 RA 353 . NC_000913 1894839 0 T C consensus_score=473.5 frequency=1 major_base=C major_cov=66/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/58 RA 354 . NC_000913 1964254 0 A C consensus_score=304.9 frequency=1 major_base=C major_cov=37/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/44 RA 355 . NC_000913 2018045 0 C T consensus_score=429.9 frequency=1 major_base=T major_cov=49/72 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/72 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/72 RA 356 . NC_000913 2040433 0 C A bias_e_value=3687500 bias_p_value=0.794438 consensus_score=301.0 fisher_strand_p_value=0.431818 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/50 major_frequency=9.886e-01 minor_base=C minor_cov=1/0 new_cov=37/50 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=38/50 RA 357 . NC_000913 2073613 0 G T bias_e_value=0.516493 bias_p_value=1.11274e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=200.2 fisher_strand_p_value=5.56162e-09 frequency=2.292e-01 ks_quality_p_value=1 major_base=G major_cov=49/25 major_frequency=7.708e-01 minor_base=T minor_cov=0/22 new_cov=0/22 polymorphism_frequency=2.292e-01 polymorphism_score=11.6 prediction=polymorphism ref_cov=49/25 total_cov=49/47 RA 358 . NC_000913 2143828 0 C T consensus_score=364.5 frequency=1 major_base=T major_cov=66/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/43 RA 359 . NC_000913 2173363 0 C . bias_e_value=3904480 bias_p_value=0.841182 consensus_score=628.6 fisher_strand_p_value=0.492308 frequency=1 ks_quality_p_value=1 major_base=. major_cov=63/66 major_frequency=9.923e-01 minor_base=C minor_cov=1/0 new_cov=63/66 polymorphism_frequency=9.923e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=1/0 total_cov=64/66 RA 360 . NC_000913 2173364 0 C . bias_e_value=3895000 bias_p_value=0.839141 consensus_score=629.3 fisher_strand_p_value=0.492308 frequency=1 ks_quality_p_value=0.994173 major_base=. major_cov=63/66 major_frequency=9.923e-01 minor_base=C minor_cov=1/0 new_cov=63/66 polymorphism_frequency=9.923e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=1/0 total_cov=64/66 RA 361 . NC_000913 2176177 0 G A bias_e_value=3373300 bias_p_value=0.726745 consensus_score=412.4 fisher_strand_p_value=0.358974 frequency=1 ks_quality_p_value=1 major_base=A major_cov=41/75 major_frequency=9.915e-01 minor_base=C minor_cov=1/0 new_cov=41/75 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/75 RA 362 . NC_000913 2188087 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=581.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=78/72 major_frequency=9.868e-01 minor_base=A minor_cov=1/1 new_cov=78/72 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=79/73 RA 363 . NC_000913 2254795 0 G A bias_e_value=3814980 bias_p_value=0.821901 consensus_score=412.5 fisher_strand_p_value=0.466102 frequency=1 ks_quality_p_value=1 major_base=A major_cov=54/63 major_frequency=9.915e-01 minor_base=C minor_cov=1/0 new_cov=54/63 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/63 RA 364 . NC_000913 2281282 0 G A bias_e_value=2209740 bias_p_value=0.476067 consensus_score=442.1 fisher_strand_p_value=0.172741 frequency=1 ks_quality_p_value=1 major_base=A major_cov=49/71 major_frequency=9.836e-01 minor_base=C minor_cov=2/0 new_cov=49/71 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/71 RA 365 . NC_000913 2288418 0 G T bias_e_value=7.02009e-08 bias_p_value=1.51241e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=373.2 fisher_strand_p_value=4.15298e-16 frequency=2.623e-01 ks_quality_p_value=1 major_base=G major_cov=88/47 major_frequency=7.377e-01 minor_base=T minor_cov=1/47 new_cov=1/47 polymorphism_frequency=2.623e-01 polymorphism_score=22.4 prediction=polymorphism ref_cov=88/47 total_cov=89/94 RA 366 . NC_000913 2304522 0 G T bias_e_value=18973.7 bias_p_value=0.0040877 consensus_reject=FREQUENCY_CUTOFF consensus_score=23.3 fisher_strand_p_value=0.00122631 frequency=7.857e-01 ks_quality_p_value=0.384987 major_base=T major_cov=5/17 major_frequency=7.857e-01 minor_base=G minor_cov=6/0 new_cov=5/17 polymorphism_frequency=7.857e-01 polymorphism_score=14.4 prediction=polymorphism ref_cov=6/0 total_cov=11/17 RA 367 . NC_000913 2304523 0 G C bias_e_value=52414.7 bias_p_value=0.0112923 consensus_reject=FREQUENCY_CUTOFF consensus_score=24.0 fisher_strand_p_value=0.00691193 frequency=7.500e-01 ks_quality_p_value=0.21788 major_base=C major_cov=5/16 major_frequency=7.500e-01 minor_base=G minor_cov=6/1 new_cov=5/16 polymorphism_frequency=7.500e-01 polymorphism_score=19.2 prediction=polymorphism ref_cov=6/1 total_cov=11/18 RA 368 . NC_000913 2304537 0 A G bias_e_value=124219 bias_p_value=0.0267618 consensus_reject=FREQUENCY_CUTOFF consensus_score=26.6 fisher_strand_p_value=0.0085588 frequency=7.667e-01 ks_quality_p_value=0.4817 major_base=G major_cov=6/17 major_frequency=7.667e-01 minor_base=A minor_cov=6/1 new_cov=6/17 polymorphism_frequency=7.667e-01 polymorphism_score=15.0 prediction=polymorphism ref_cov=6/1 total_cov=12/18 RA 369 . NC_000913 2304540 0 C T bias_e_value=422914 bias_p_value=0.0911128 consensus_reject=FREQUENCY_CUTOFF consensus_score=13.6 fisher_strand_p_value=0.0183865 frequency=6.875e-01 ks_quality_p_value=0.989825 major_base=T major_cov=5/17 major_frequency=6.875e-01 minor_base=C minor_cov=7/3 new_cov=5/17 polymorphism_frequency=6.875e-01 polymorphism_score=22.3 prediction=polymorphism ref_cov=7/3 total_cov=12/20 RA 370 . NC_000913 2304549 0 C T bias_e_value=2944120 bias_p_value=0.634283 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-5.2 fisher_strand_p_value=0.298331 frequency=5.556e-01 ks_quality_p_value=0.932912 major_base=T major_cov=5/15 major_frequency=5.556e-01 minor_base=C minor_cov=7/9 new_cov=5/15 polymorphism_frequency=5.556e-01 polymorphism_score=41.4 prediction=polymorphism ref_cov=7/9 total_cov=12/25 RA 371 . NC_000913 2304567 0 C T bias_e_value=3226180 bias_p_value=0.695049 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=5.5 fisher_strand_p_value=0.488922 frequency=5.263e-01 ks_quality_p_value=0.673463 major_base=T major_cov=5/15 major_frequency=5.263e-01 minor_base=C minor_cov=7/11 new_cov=5/15 polymorphism_frequency=5.263e-01 polymorphism_score=48.4 prediction=polymorphism ref_cov=7/11 total_cov=12/26 RA 372 . NC_000913 2304575 0 G A bias_e_value=3839010 bias_p_value=0.827079 consensus_reject=FREQUENCY_CUTOFF consensus_score=11.4 fisher_strand_p_value=0.495055 frequency=5.135e-01 ks_quality_p_value=0.95535 major_base=A major_cov=5/14 major_frequency=5.135e-01 minor_base=G minor_cov=7/11 new_cov=5/14 polymorphism_frequency=5.135e-01 polymorphism_score=50.8 prediction=polymorphism ref_cov=7/11 total_cov=12/26 RA 373 . NC_000913 2335464 0 G A consensus_score=450.4 frequency=1 major_base=A major_cov=56/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/67 RA 374 . NC_000913 2384808 0 C T bias_e_value=3816980 bias_p_value=0.822332 consensus_score=386.1 fisher_strand_p_value=0.466667 frequency=1 ks_quality_p_value=1 major_base=T major_cov=64/55 major_frequency=9.917e-01 minor_base=G minor_cov=0/1 new_cov=64/55 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/56 RA 375 . NC_000913 2410419 0 G A consensus_score=461.2 frequency=1 major_base=A major_cov=84/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/45 RA 376 . NC_000913 2444820 0 C T bias_e_value=983662 bias_p_value=0.211921 consensus_score=399.8 fisher_strand_p_value=0.0541052 frequency=1 ks_quality_p_value=1 major_base=T major_cov=59/66 major_frequency=9.690e-01 minor_base=C minor_cov=4/0 new_cov=59/66 polymorphism_frequency=9.690e-01 polymorphism_score=NA prediction=consensus ref_cov=4/0 total_cov=63/66 RA 377 . NC_000913 2447079 0 G A bias_e_value=3756620 bias_p_value=0.809328 consensus_score=337.4 fisher_strand_p_value=0.45 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/55 major_frequency=9.900e-01 minor_base=C minor_cov=1/0 new_cov=44/55 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=45/56 RA 378 . NC_000913 2472817 0 C A bias_e_value=4.85289e-07 bias_p_value=1.04551e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=237.8 fisher_strand_p_value=3.0368e-15 frequency=2.966e-01 ks_quality_p_value=1 major_base=C major_cov=22/61 major_frequency=7.034e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.966e-01 polymorphism_score=15.2 prediction=polymorphism ref_cov=22/61 total_cov=58/61 RA 379 . NC_000913 2477265 0 A C bias_e_value=3.48145e-09 bias_p_value=7.50045e-16 consensus_reject=FREQUENCY_CUTOFF consensus_score=267.6 fisher_strand_p_value=1.89872e-17 frequency=2.419e-01 ks_quality_p_value=1 major_base=A major_cov=16/78 major_frequency=7.581e-01 minor_base=C minor_cov=30/0 new_cov=30/0 polymorphism_frequency=2.419e-01 polymorphism_score=26.7 prediction=polymorphism ref_cov=16/78 total_cov=46/78 RA 380 . NC_000913 2484827 0 C T bias_e_value=2291980 bias_p_value=0.493784 consensus_score=663.4 fisher_strand_p_value=0.183001 frequency=1 ks_quality_p_value=1 major_base=T major_cov=105/77 major_frequency=9.891e-01 minor_base=C minor_cov=0/2 new_cov=105/77 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=105/79 RA 381 . NC_000913 2490240 0 G T bias_e_value=4.87498e-05 bias_p_value=1.05027e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=342.3 fisher_strand_p_value=3.53989e-13 frequency=2.611e-01 ks_quality_p_value=1 major_base=G major_cov=72/61 major_frequency=7.389e-01 minor_base=T minor_cov=0/47 new_cov=0/47 polymorphism_frequency=2.611e-01 polymorphism_score=12.5 prediction=polymorphism ref_cov=72/61 total_cov=72/108 RA 382 . NC_000913 2587666 0 C T consensus_score=522.1 frequency=1 major_base=T major_cov=85/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=85/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=85/62 RA 383 . NC_000913 2722838 0 G T bias_e_value=6.02327e-08 bias_p_value=1.29766e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=280.1 fisher_strand_p_value=3.54793e-16 frequency=2.973e-01 ks_quality_p_value=1 major_base=G major_cov=69/35 major_frequency=7.027e-01 minor_base=T minor_cov=0/44 new_cov=0/44 polymorphism_frequency=2.973e-01 polymorphism_score=15.5 prediction=polymorphism ref_cov=69/35 total_cov=69/79 RA 384 . NC_000913 2724285 0 G A bias_e_value=3809530 bias_p_value=0.820727 consensus_score=455.8 fisher_strand_p_value=0.464567 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/68 major_frequency=9.921e-01 minor_base=C minor_cov=1/0 new_cov=58/68 polymorphism_frequency=9.921e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/68 RA 385 . NC_000913 2729586 0 G A consensus_score=386.4 frequency=1 major_base=A major_cov=66/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/64 RA 386 . NC_000913 2767444 0 C A bias_e_value=1.35191e-17 bias_p_value=2.91255e-24 consensus_reject=FREQUENCY_CUTOFF consensus_score=311.7 fisher_strand_p_value=4.91361e-26 frequency=3.053e-01 ks_quality_p_value=1 major_base=C major_cov=8/83 major_frequency=6.947e-01 minor_base=A minor_cov=40/0 new_cov=40/0 polymorphism_frequency=3.053e-01 polymorphism_score=11.1 prediction=polymorphism ref_cov=8/83 total_cov=49/83 RA 387 . NC_000913 2767445 0 C A bias_e_value=8.31542e-12 bias_p_value=1.79148e-18 consensus_reject=FREQUENCY_CUTOFF consensus_score=311.4 fisher_strand_p_value=3.92135e-20 frequency=2.576e-01 ks_quality_p_value=1 major_base=C major_cov=15/83 major_frequency=7.424e-01 minor_base=A minor_cov=34/0 new_cov=34/0 polymorphism_frequency=2.576e-01 polymorphism_score=16.9 prediction=polymorphism ref_cov=15/83 total_cov=49/83 RA 388 . NC_000913 2779623 0 C T consensus_score=345.0 frequency=1 major_base=T major_cov=53/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/43 RA 389 . NC_000913 2838241 0 G A consensus_score=582.4 frequency=1 major_base=A major_cov=67/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/94 RA 390 . NC_000913 2907049 0 C A bias_e_value=0.000244051 bias_p_value=5.25784e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=359.6 fisher_strand_p_value=1.87774e-12 frequency=2.222e-01 ks_quality_p_value=1 major_base=C major_cov=50/76 major_frequency=7.778e-01 minor_base=A minor_cov=36/0 new_cov=36/0 polymorphism_frequency=2.222e-01 polymorphism_score=13.1 prediction=polymorphism ref_cov=50/76 total_cov=86/76 RA 391 . NC_000913 2923941 0 C T consensus_score=441.2 frequency=1 major_base=T major_cov=58/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/66 RA 392 . NC_000913 2924310 0 C T bias_e_value=3829240 bias_p_value=0.824973 consensus_score=479.3 fisher_strand_p_value=0.470149 frequency=1 ks_quality_p_value=1 major_base=T major_cov=71/62 major_frequency=9.925e-01 minor_base=C minor_cov=0/1 new_cov=71/62 polymorphism_frequency=9.925e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=71/64 RA 393 . NC_000913 2931805 0 C T consensus_score=419.3 frequency=1 major_base=T major_cov=51/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/66 RA 394 . NC_000913 2937524 0 C T consensus_score=415.0 frequency=1 major_base=T major_cov=74/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=74/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/40 RA 395 . NC_000913 2951111 0 C T consensus_score=394.4 frequency=1 major_base=T major_cov=70/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/43 RA 396 . NC_000913 2959564 0 C T bias_e_value=3753480 bias_p_value=0.808651 consensus_score=407.3 fisher_strand_p_value=0.449153 frequency=1 ks_quality_p_value=1 major_base=T major_cov=65/52 major_frequency=9.915e-01 minor_base=G minor_cov=0/1 new_cov=65/52 polymorphism_frequency=9.915e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/53 RA 397 . NC_000913 2988926 0 C T bias_e_value=1001150 bias_p_value=0.215689 consensus_score=555.5 fisher_strand_p_value=0.0554026 frequency=1 ks_quality_p_value=1 major_base=T major_cov=99/59 major_frequency=9.814e-01 minor_base=G minor_cov=0/3 new_cov=99/59 polymorphism_frequency=9.814e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/62 RA 398 . NC_000913 2990480 0 C A bias_e_value=0.000955742 bias_p_value=2.05905e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=301.7 fisher_strand_p_value=7.74549e-12 frequency=2.873e-01 ks_quality_p_value=1 major_base=C major_cov=69/60 major_frequency=7.127e-01 minor_base=A minor_cov=52/0 new_cov=52/0 polymorphism_frequency=2.873e-01 polymorphism_score=13.8 prediction=polymorphism ref_cov=69/60 total_cov=121/60 RA 399 . NC_000913 2990642 0 C T consensus_score=874.7 frequency=1 major_base=T major_cov=132/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/115 RA 400 . NC_000913 3024914 0 C A bias_e_value=8.90624e-08 bias_p_value=1.91877e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=398.8 fisher_strand_p_value=5.30444e-16 frequency=2.121e-01 ks_quality_p_value=1 major_base=C major_cov=37/93 major_frequency=7.879e-01 minor_base=A minor_cov=35/0 new_cov=35/0 polymorphism_frequency=2.121e-01 polymorphism_score=10.9 prediction=polymorphism ref_cov=37/93 total_cov=72/94 RA 401 . NC_000913 3032307 0 C T bias_e_value=3.86654e-08 bias_p_value=8.33009e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=234.3 fisher_strand_p_value=2.24951e-16 frequency=2.847e-01 ks_quality_p_value=1 major_base=C major_cov=28/70 major_frequency=7.153e-01 minor_base=T minor_cov=39/0 new_cov=39/0 polymorphism_frequency=2.847e-01 polymorphism_score=39.9 prediction=polymorphism ref_cov=28/70 total_cov=68/70 RA 402 . NC_000913 3054886 0 G T bias_e_value=3.74223e-06 bias_p_value=8.06228e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=249.2 fisher_strand_p_value=2.49435e-14 frequency=2.741e-01 ks_quality_p_value=1 major_base=G major_cov=32/66 major_frequency=7.259e-01 minor_base=T minor_cov=37/0 new_cov=37/0 polymorphism_frequency=2.741e-01 polymorphism_score=30.8 prediction=polymorphism ref_cov=32/66 total_cov=69/66 RA 403 . NC_000913 3054894 0 G T bias_e_value=0.663722 bias_p_value=1.42993e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=223.3 fisher_strand_p_value=7.2426e-09 frequency=2.619e-01 ks_quality_p_value=1 major_base=G major_cov=31/62 major_frequency=7.381e-01 minor_base=T minor_cov=30/3 new_cov=30/3 polymorphism_frequency=2.619e-01 polymorphism_score=22.6 prediction=polymorphism ref_cov=31/62 total_cov=62/65 RA 404 . NC_000913 3057584 0 G A consensus_score=359.2 frequency=1 major_base=A major_cov=53/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/52 RA 405 . NC_000913 3088010 0 C T bias_e_value=3919590 bias_p_value=0.844438 consensus_score=529.6 fisher_strand_p_value=0.496933 frequency=1 ks_quality_p_value=1 major_base=T major_cov=82/80 major_frequency=9.878e-01 minor_base=G minor_cov=0/2 new_cov=82/80 polymorphism_frequency=9.878e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/0 total_cov=82/82 RA 406 . NC_000913 3088011 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=547.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=82/81 major_frequency=9.939e-01 minor_base=G minor_cov=0/1 new_cov=82/81 polymorphism_frequency=9.939e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=82/82 RA 407 . NC_000913 3136616 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=852.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=107/139 major_frequency=9.960e-01 minor_base=G minor_cov=0/1 new_cov=107/139 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/140 RA 408 . NC_000913 3157420 0 C A bias_e_value=2.85156e-10 bias_p_value=6.14341e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=543.7 fisher_strand_p_value=1.46036e-18 frequency=2.172e-01 ks_quality_p_value=1 major_base=C major_cov=66/125 major_frequency=7.828e-01 minor_base=A minor_cov=52/1 new_cov=52/1 polymorphism_frequency=2.172e-01 polymorphism_score=13.3 prediction=polymorphism ref_cov=66/125 total_cov=118/126 RA 409 . NC_000913 3168264 0 G T bias_e_value=6.21578e-07 bias_p_value=1.33913e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=424.1 fisher_strand_p_value=3.91868e-15 frequency=2.679e-01 ks_quality_p_value=1 major_base=G major_cov=82/82 major_frequency=7.321e-01 minor_base=T minor_cov=0/60 new_cov=0/60 polymorphism_frequency=2.679e-01 polymorphism_score=15.3 prediction=polymorphism ref_cov=82/82 total_cov=82/142 RA 410 . NC_000913 3191376 0 G T bias_e_value=0.00145319 bias_p_value=3.13076e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=507.0 fisher_strand_p_value=1.19731e-11 frequency=2.050e-01 ks_quality_p_value=1 major_base=G major_cov=96/94 major_frequency=7.950e-01 minor_base=T minor_cov=1/48 new_cov=1/48 polymorphism_frequency=2.050e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=96/94 total_cov=97/142 RA 411 . NC_000913 3213461 0 G A bias_e_value=3730560 bias_p_value=0.803713 consensus_score=433.0 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=0.99683 major_base=A major_cov=70/55 major_frequency=9.921e-01 minor_base=G minor_cov=0/1 new_cov=70/55 polymorphism_frequency=9.921e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=0/1 total_cov=70/56 RA 412 . NC_000913 3219727 0 C T consensus_score=418.3 frequency=1 major_base=T major_cov=74/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=74/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/53 RA 413 . NC_000913 3221812 0 C A bias_e_value=9.26002 bias_p_value=1.99498e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=318.9 fisher_strand_p_value=1.1766e-07 frequency=2.284e-01 ks_quality_p_value=1 major_base=C major_cov=66/59 major_frequency=7.716e-01 minor_base=A minor_cov=36/1 new_cov=36/1 polymorphism_frequency=2.284e-01 polymorphism_score=17.6 prediction=polymorphism ref_cov=66/59 total_cov=102/61 RA 414 . NC_000913 3226224 0 G T bias_e_value=0.000135467 bias_p_value=2.91851e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=340.0 fisher_strand_p_value=1.02006e-12 frequency=2.727e-01 ks_quality_p_value=1 major_base=G major_cov=68/68 major_frequency=7.273e-01 minor_base=T minor_cov=0/51 new_cov=0/51 polymorphism_frequency=2.727e-01 polymorphism_score=10.6 prediction=polymorphism ref_cov=68/68 total_cov=68/119 RA 415 . NC_000913 3231198 0 C T bias_e_value=3877250 bias_p_value=0.835317 consensus_score=417.3 fisher_strand_p_value=0.484127 frequency=1 ks_quality_p_value=1 major_base=T major_cov=60/65 major_frequency=9.921e-01 minor_base=C minor_cov=1/0 new_cov=60/65 polymorphism_frequency=9.921e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=61/65 RA 416 . NC_000913 3234081 0 C T bias_e_value=2231810 bias_p_value=0.480822 consensus_score=757.2 fisher_strand_p_value=0.175461 frequency=1 ks_quality_p_value=1 major_base=T major_cov=120/85 major_frequency=9.903e-01 minor_base=G minor_cov=0/2 new_cov=120/85 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/87 RA 417 . NC_000913 3261415 0 T G consensus_score=546.1 frequency=1 major_base=G major_cov=70/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/73 RA 418 . NC_000913 3269981 0 A C bias_e_value=2.0616e-10 bias_p_value=4.44153e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=277.1 fisher_strand_p_value=1.04753e-18 frequency=2.639e-01 ks_quality_p_value=1 major_base=A major_cov=24/82 major_frequency=7.361e-01 minor_base=C minor_cov=38/0 new_cov=38/0 polymorphism_frequency=2.639e-01 polymorphism_score=10.1 prediction=polymorphism ref_cov=24/82 total_cov=63/82 RA 419 . NC_000913 3271554 0 C T bias_e_value=4641650 bias_p_value=0.999999 consensus_score=546.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998694 major_base=T major_cov=79/77 major_frequency=9.936e-01 minor_base=G minor_cov=1/0 new_cov=79/77 polymorphism_frequency=9.936e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=0/0 total_cov=80/77 RA 420 . NC_000913 3311284 0 C T consensus_score=458.1 frequency=1 major_base=T major_cov=77/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=77/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=77/55 RA 421 . NC_000913 3336411 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=497.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999135 major_base=A major_cov=62/73 major_frequency=9.854e-01 minor_base=. minor_cov=1/1 new_cov=62/73 polymorphism_frequency=9.854e-01 polymorphism_score=0.3 prediction=consensus ref_cov=0/0 total_cov=63/74 RA 422 . NC_000913 3336412 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=441.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=62/72 major_frequency=9.853e-01 minor_base=A minor_cov=1/1 new_cov=62/72 polymorphism_frequency=9.853e-01 polymorphism_score=-2.0 prediction=consensus ref_cov=1/1 total_cov=63/74 RA 423 . NC_000913 3388041 0 T G consensus_score=454.9 frequency=1 major_base=G major_cov=53/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/67 RA 424 . NC_000913 3401345 0 G T bias_e_value=0.0233943 bias_p_value=5.04009e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=247.5 fisher_strand_p_value=2.16757e-10 frequency=2.746e-01 ks_quality_p_value=1 major_base=G major_cov=53/50 major_frequency=7.254e-01 minor_base=T minor_cov=0/39 new_cov=0/39 polymorphism_frequency=2.746e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=53/50 total_cov=53/89 RA 425 . NC_000913 3433680 0 C A bias_e_value=1.12501e-05 bias_p_value=2.42372e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=343.6 fisher_strand_p_value=7.77192e-14 frequency=2.544e-01 ks_quality_p_value=1 major_base=C major_cov=52/74 major_frequency=7.456e-01 minor_base=A minor_cov=43/0 new_cov=43/0 polymorphism_frequency=2.544e-01 polymorphism_score=21.8 prediction=polymorphism ref_cov=52/74 total_cov=95/74 RA 426 . NC_000913 3436697 0 G A bias_e_value=3792680 bias_p_value=0.817096 consensus_score=385.2 fisher_strand_p_value=0.463636 frequency=1 ks_quality_p_value=0.99186 major_base=A major_cov=59/50 major_frequency=9.909e-01 minor_base=G minor_cov=0/1 new_cov=59/50 polymorphism_frequency=9.909e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=59/51 RA 427 . NC_000913 3445166 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=492.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=58/74 major_frequency=9.925e-01 minor_base=T minor_cov=0/1 new_cov=58/74 polymorphism_frequency=9.925e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/75 RA 428 . NC_000913 3464134 0 C T consensus_score=408.1 frequency=1 major_base=T major_cov=69/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/50 RA 429 . NC_000913 3469569 0 G A bias_e_value=8.75326e-05 bias_p_value=1.88581e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=257.9 fisher_strand_p_value=6.48856e-13 frequency=2.533e-01 ks_quality_p_value=1 major_base=G major_cov=69/43 major_frequency=7.467e-01 minor_base=A minor_cov=0/38 new_cov=0/38 polymorphism_frequency=2.533e-01 polymorphism_score=31.7 prediction=polymorphism ref_cov=69/43 total_cov=69/81 RA 430 . NC_000913 3472093 0 C T consensus_score=415.1 frequency=1 major_base=T major_cov=65/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=65/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/54 RA 431 . NC_000913 3492429 0 C T bias_e_value=3853940 bias_p_value=0.830296 consensus_score=634.8 fisher_strand_p_value=0.477273 frequency=1 ks_quality_p_value=1 major_base=T major_cov=83/92 major_frequency=9.943e-01 minor_base=C minor_cov=1/0 new_cov=83/92 polymorphism_frequency=9.943e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=84/92 RA 432 . NC_000913 3502008 0 C T consensus_score=311.5 frequency=1 major_base=T major_cov=52/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/38 RA 433 . NC_000913 3503153 0 C T bias_e_value=3911480 bias_p_value=0.842691 consensus_score=400.6 fisher_strand_p_value=0.495652 frequency=1 ks_quality_p_value=0.997562 major_base=T major_cov=58/56 major_frequency=9.913e-01 minor_base=G minor_cov=0/1 new_cov=58/56 polymorphism_frequency=9.913e-01 polymorphism_score=-6.6 prediction=consensus ref_cov=0/0 total_cov=58/57 RA 434 . NC_000913 3504390 0 C T consensus_score=584.4 frequency=1 major_base=T major_cov=95/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=95/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=95/63 RA 435 . NC_000913 3504700 0 C T consensus_score=412.8 frequency=1 major_base=T major_cov=38/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/94 RA 436 . NC_000913 3515404 0 C T consensus_score=407.2 frequency=1 major_base=T major_cov=57/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/58 RA 437 . NC_000913 3516543 0 C T consensus_score=255.6 frequency=1 major_base=T major_cov=38/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/37 RA 438 . NC_000913 3516814 0 C T consensus_score=348.0 frequency=1 major_base=T major_cov=62/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/38 RA 439 . NC_000913 3542195 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=398.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=54/57 major_frequency=9.911e-01 minor_base=A minor_cov=0/1 new_cov=54/57 polymorphism_frequency=9.911e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=54/59 RA 440 . NC_000913 3542270 0 C T bias_e_value=3927240 bias_p_value=0.846088 consensus_score=417.1 fisher_strand_p_value=0.4993 frequency=1 ks_quality_p_value=1 major_base=T major_cov=55/63 major_frequency=9.833e-01 minor_base=G minor_cov=0/2 new_cov=55/63 polymorphism_frequency=9.833e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/65 RA 441 . NC_000913 3560455 1 . G bias_e_value=3294870 bias_p_value=0.709848 consensus_score=395.8 fisher_strand_p_value=0.349057 frequency=1 ks_quality_p_value=0.982191 major_base=G major_cov=36/69 major_frequency=9.906e-01 minor_base=. minor_cov=1/0 new_cov=36/69 polymorphism_frequency=9.906e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/0 total_cov=37/69 RA 442 . NC_000913 3563542 0 G A consensus_score=358.2 frequency=1 major_base=A major_cov=55/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/48 RA 443 . NC_000913 3622220 0 G A consensus_score=152.7 frequency=1 major_base=A major_cov=24/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/31 RA 444 . NC_000913 3643244 0 G A consensus_score=448.1 frequency=1 major_base=A major_cov=60/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/60 RA 445 . NC_000913 3651471 0 G A consensus_score=604.9 frequency=1 major_base=A major_cov=84/84 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/84 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/84 RA 446 . NC_000913 3682515 0 C T consensus_score=449.5 frequency=1 major_base=T major_cov=67/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/57 RA 447 . NC_000913 3693807 0 G A consensus_score=322.7 frequency=1 major_base=A major_cov=32/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/55 RA 448 . NC_000913 3707947 0 C A consensus_score=573.5 frequency=1 major_base=A major_cov=113/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/57 RA 449 . NC_000913 3725176 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=453.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=58/63 major_frequency=9.918e-01 minor_base=A minor_cov=0/1 new_cov=58/63 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/64 RA 450 . NC_000913 3743273 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=409.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=75/49 major_frequency=9.920e-01 minor_base=C minor_cov=1/0 new_cov=75/49 polymorphism_frequency=9.920e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=77/49 RA 451 . NC_000913 3771979 0 G T bias_e_value=3919830 bias_p_value=0.844489 consensus_score=585.5 fisher_strand_p_value=0.497006 frequency=1 ks_quality_p_value=1 major_base=T major_cov=84/82 major_frequency=9.940e-01 minor_base=G minor_cov=0/1 new_cov=84/82 polymorphism_frequency=9.940e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=85/83 RA 452 . NC_000913 3774117 0 G A consensus_score=460.1 frequency=1 major_base=A major_cov=61/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/73 RA 453 . NC_000913 3778054 0 G A consensus_score=336.3 frequency=1 major_base=A major_cov=41/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/57 RA 454 . NC_000913 3815589 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=448.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=72/55 major_frequency=9.922e-01 minor_base=C minor_cov=1/0 new_cov=72/55 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=73/55 RA 455 . NC_000913 3815689 0 G A consensus_score=484.0 frequency=1 major_base=A major_cov=75/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=75/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=75/65 RA 456 . NC_000913 3815883 1 . C bias_e_value=2232700 bias_p_value=0.481014 consensus_score=451.7 fisher_strand_p_value=0.17562 frequency=1 ks_quality_p_value=0.999722 major_base=C major_cov=49/70 major_frequency=9.835e-01 minor_base=. minor_cov=2/0 new_cov=49/70 polymorphism_frequency=9.835e-01 polymorphism_score=0.0 prediction=consensus ref_cov=2/0 total_cov=52/70 RA 457 . NC_000913 3823162 0 C T consensus_score=457.4 frequency=1 major_base=T major_cov=51/80 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/80 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/80 RA 458 . NC_000913 3841663 0 G A bias_e_value=28.1645 bias_p_value=6.06777e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=213.5 fisher_strand_p_value=3.8475e-07 frequency=2.095e-01 ks_quality_p_value=1 major_base=G major_cov=46/37 major_frequency=7.905e-01 minor_base=A minor_cov=0/22 new_cov=0/22 polymorphism_frequency=2.095e-01 polymorphism_score=29.5 prediction=polymorphism ref_cov=46/37 total_cov=46/59 RA 459 . NC_000913 3849801 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=361.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=41/64 major_frequency=9.906e-01 minor_base=G minor_cov=0/1 new_cov=41/64 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/65 RA 460 . NC_000913 3850840 0 G A consensus_score=396.6 frequency=1 major_base=A major_cov=67/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/67 RA 461 . NC_000913 3861090 0 G A consensus_score=526.5 frequency=1 major_base=A major_cov=56/86 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/86 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/86 RA 462 . NC_000913 3869637 0 C A consensus_score=420.6 frequency=1 major_base=A major_cov=56/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/63 RA 463 . NC_000913 3870496 0 G A consensus_score=471.1 frequency=1 major_base=A major_cov=92/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/41 RA 464 . NC_000913 3878536 0 G A consensus_score=377.2 frequency=1 major_base=A major_cov=30/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/73 RA 465 . NC_000913 3891585 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=467.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=63/70 major_frequency=9.925e-01 minor_base=G minor_cov=0/1 new_cov=63/70 polymorphism_frequency=9.925e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/71 RA 466 . NC_000913 3901242 0 C T consensus_score=707.3 frequency=1 major_base=T major_cov=110/87 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/87 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/87 RA 467 . NC_000913 3911533 0 C A bias_e_value=1.38901e-11 bias_p_value=2.99249e-18 consensus_reject=FREQUENCY_CUTOFF consensus_score=288.5 fisher_strand_p_value=6.62632e-20 frequency=3.459e-01 ks_quality_p_value=1 major_base=C major_cov=46/75 major_frequency=6.541e-01 minor_base=A minor_cov=64/0 new_cov=64/0 polymorphism_frequency=3.459e-01 polymorphism_score=43.3 prediction=polymorphism ref_cov=46/75 total_cov=110/75 RA 468 . NC_000913 3912829 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=408.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=67/55 major_frequency=9.919e-01 minor_base=C minor_cov=1/0 new_cov=67/55 polymorphism_frequency=9.919e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/55 RA 469 . NC_000913 3919729 0 G A consensus_score=365.9 frequency=1 major_base=A major_cov=58/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/46 RA 470 . NC_000913 3923539 0 C A bias_e_value=0.187522 bias_p_value=4.03998e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=210.1 fisher_strand_p_value=1.91719e-09 frequency=2.613e-01 ks_quality_p_value=1 major_base=C major_cov=34/48 major_frequency=7.387e-01 minor_base=A minor_cov=29/0 new_cov=29/0 polymorphism_frequency=2.613e-01 polymorphism_score=10.3 prediction=polymorphism ref_cov=34/48 total_cov=63/48 RA 471 . NC_000913 3926595 0 C A bias_e_value=0.00043719 bias_p_value=9.41884e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=236.5 fisher_strand_p_value=3.43802e-12 frequency=2.632e-01 ks_quality_p_value=1 major_base=C major_cov=22/62 major_frequency=7.368e-01 minor_base=A minor_cov=29/1 new_cov=29/1 polymorphism_frequency=2.632e-01 polymorphism_score=11.4 prediction=polymorphism ref_cov=22/62 total_cov=51/64 RA 472 . NC_000913 3943881 0 G A bias_e_value=4641260 bias_p_value=0.999916 consensus_score=289.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.987096 major_base=A major_cov=56/80 major_frequency=9.927e-01 minor_base=G minor_cov=0/1 new_cov=56/80 polymorphism_frequency=9.927e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=56/81 RA 473 . NC_000913 3944127 0 G A bias_e_value=3929190 bias_p_value=0.846506 consensus_score=223.8 fisher_strand_p_value=0.499903 frequency=1 ks_quality_p_value=1 major_base=A major_cov=54/46 major_frequency=9.804e-01 minor_base=C minor_cov=2/0 new_cov=54/46 polymorphism_frequency=9.804e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/46 RA 474 . NC_000913 3948492 0 G A bias_e_value=3694300 bias_p_value=0.795902 consensus_score=497.6 fisher_strand_p_value=0.433566 frequency=1 ks_quality_p_value=1 major_base=A major_cov=61/81 major_frequency=9.930e-01 minor_base=G minor_cov=1/0 new_cov=61/81 polymorphism_frequency=9.930e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=62/81 RA 475 . NC_000913 3957234 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=358.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=49/50 major_frequency=9.900e-01 minor_base=G minor_cov=1/0 new_cov=49/50 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=50/50 RA 476 . NC_000913 3963294 0 C T consensus_score=387.7 frequency=1 major_base=T major_cov=35/79 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/79 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/79 RA 477 . NC_000913 3970253 0 G T bias_e_value=0.000206723 bias_p_value=4.45365e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=217.8 fisher_strand_p_value=1.58082e-12 frequency=2.931e-01 ks_quality_p_value=1 major_base=G major_cov=54/28 major_frequency=7.069e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=2.931e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=54/28 total_cov=54/62 RA 478 . NC_000913 3975797 0 C T consensus_score=469.5 frequency=1 major_base=T major_cov=69/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/64 RA 479 . NC_000913 3993531 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=407.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999827 major_base=C major_cov=63/44 major_frequency=9.907e-01 minor_base=A minor_cov=1/0 new_cov=63/44 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/44 RA 480 . NC_000913 3996049 0 T A bias_e_value=3680400 bias_p_value=0.792907 consensus_score=342.1 fisher_strand_p_value=0.43 frequency=1 ks_quality_p_value=1 major_base=A major_cov=57/42 major_frequency=9.900e-01 minor_base=G minor_cov=0/1 new_cov=57/42 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/43 RA 481 . NC_000913 3997726 0 G A consensus_score=448.7 frequency=1 major_base=A major_cov=64/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/65 RA 482 . NC_000913 4011802 0 C T consensus_score=369.0 frequency=1 major_base=T major_cov=37/70 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/70 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/70 RA 483 . NC_000913 4016421 0 G A bias_e_value=3851320 bias_p_value=0.829731 consensus_score=526.0 fisher_strand_p_value=0.47651 frequency=1 ks_quality_p_value=1 major_base=A major_cov=70/78 major_frequency=9.933e-01 minor_base=C minor_cov=1/0 new_cov=70/78 polymorphism_frequency=9.933e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=71/79 RA 484 . NC_000913 4038486 0 C T consensus_score=101.7 frequency=1 major_base=T major_cov=7/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/31 RA 485 . NC_000913 4084903 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=420.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=47/71 major_frequency=9.916e-01 minor_base=T minor_cov=0/1 new_cov=47/71 polymorphism_frequency=9.916e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=47/72 RA 486 . NC_000913 4092703 0 A G consensus_score=514.3 frequency=1 major_base=G major_cov=76/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=76/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/60 RA 487 . NC_000913 4095424 0 G A consensus_score=471.1 frequency=1 major_base=A major_cov=79/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=79/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=79/58 RA 488 . NC_000913 4110568 0 G A consensus_score=404.0 frequency=1 major_base=A major_cov=64/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/55 RA 489 . NC_000913 4113851 0 G A consensus_score=461.8 frequency=1 major_base=A major_cov=83/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=83/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/49 RA 490 . NC_000913 4115681 0 G A consensus_score=321.4 frequency=1 major_base=A major_cov=50/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/41 RA 491 . NC_000913 4143377 0 C T bias_e_value=3447330 bias_p_value=0.742695 consensus_score=295.4 fisher_strand_p_value=0.375 frequency=1 ks_quality_p_value=0.999684 major_base=T major_cov=50/29 major_frequency=9.875e-01 minor_base=G minor_cov=0/1 new_cov=50/29 polymorphism_frequency=9.875e-01 polymorphism_score=-6.6 prediction=consensus ref_cov=0/0 total_cov=50/30 RA 492 . NC_000913 4161248 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=393.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=51/70 major_frequency=9.918e-01 minor_base=G minor_cov=0/1 new_cov=51/70 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=51/71 RA 493 . NC_000913 4164123 0 C G bias_e_value=3738920 bias_p_value=0.805515 consensus_score=506.1 fisher_strand_p_value=0.445255 frequency=1 ks_quality_p_value=1 major_base=G major_cov=76/60 major_frequency=9.927e-01 minor_base=T minor_cov=0/1 new_cov=76/60 polymorphism_frequency=9.927e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/61 RA 494 . NC_000913 4193996 0 T G bias_e_value=3909990 bias_p_value=0.84237 consensus_score=296.6 fisher_strand_p_value=0.493987 frequency=1 ks_quality_p_value=1 major_base=G major_cov=39/39 major_frequency=9.750e-01 minor_base=T minor_cov=0/2 new_cov=39/39 polymorphism_frequency=9.750e-01 polymorphism_score=NA prediction=consensus ref_cov=0/2 total_cov=39/41 RA 495 . NC_000913 4194432 0 G A consensus_score=356.0 frequency=1 major_base=A major_cov=53/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/49 RA 496 . NC_000913 4196331 0 C G bias_e_value=3713160 bias_p_value=0.799966 consensus_score=486.5 fisher_strand_p_value=0.438462 frequency=1 ks_quality_p_value=1 major_base=G major_cov=73/56 major_frequency=9.923e-01 minor_base=T minor_cov=0/1 new_cov=73/56 polymorphism_frequency=9.923e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=73/57 RA 497 . NC_000913 4215347 0 T A bias_e_value=3808530 bias_p_value=0.820511 consensus_score=473.8 fisher_strand_p_value=0.464286 frequency=1 ks_quality_p_value=1 major_base=A major_cov=64/75 major_frequency=9.929e-01 minor_base=C minor_cov=1/0 new_cov=64/75 polymorphism_frequency=9.929e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/75 RA 498 . NC_000913 4223638 0 T C bias_e_value=3750220 bias_p_value=0.807948 consensus_score=528.8 fisher_strand_p_value=0.448276 frequency=1 ks_quality_p_value=1 major_base=C major_cov=64/80 major_frequency=9.931e-01 minor_base=A minor_cov=1/0 new_cov=64/80 polymorphism_frequency=9.931e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/80 RA 499 . NC_000913 4282332 1 . A bias_e_value=4641650 bias_p_value=1 consensus_score=599.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999921 major_base=A major_cov=85/74 major_frequency=9.938e-01 minor_base=. minor_cov=1/0 new_cov=85/74 polymorphism_frequency=9.938e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=1/0 total_cov=86/74 RA 500 . NC_000913 4293781 0 G A consensus_score=280.0 frequency=1 major_base=A major_cov=40/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/44 RA 501 . NC_000913 4293782 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=307.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/43 major_frequency=9.881e-01 minor_base=G minor_cov=0/1 new_cov=40/43 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/44 RA 502 . NC_000913 4296191 0 A C bias_e_value=3756080 bias_p_value=0.809213 consensus_reject=FREQUENCY_CUTOFF consensus_score=45.3 fisher_strand_p_value=0.490115 frequency=2.381e-01 ks_quality_p_value=0.917856 major_base=A major_cov=18/14 major_frequency=7.619e-01 minor_base=C minor_cov=7/3 new_cov=7/3 polymorphism_frequency=2.381e-01 polymorphism_score=18.1 prediction=polymorphism ref_cov=18/14 total_cov=25/17 RA 503 . NC_000913 4296268 0 T C bias_e_value=3153530 bias_p_value=0.679398 consensus_reject=FREQUENCY_CUTOFF consensus_score=62.4 fisher_strand_p_value=0.336074 frequency=2.826e-01 ks_quality_p_value=0.938622 major_base=T major_cov=17/16 major_frequency=7.174e-01 minor_base=C minor_cov=9/4 new_cov=9/4 polymorphism_frequency=2.826e-01 polymorphism_score=32.0 prediction=polymorphism ref_cov=17/16 total_cov=26/20 RA 504 . NC_000913 4296380 1 . C bias_e_value=4314540 bias_p_value=0.929527 consensus_score=285.2 fisher_strand_p_value=0.648883 frequency=1 ks_quality_p_value=1 major_base=C major_cov=49/36 major_frequency=9.444e-01 minor_base=T minor_cov=2/3 new_cov=49/36 polymorphism_frequency=9.444e-01 polymorphism_score=3.2 prediction=consensus ref_cov=0/0 total_cov=51/39 RA 505 . NC_000913 4296380 2 . G consensus_score=313.0 frequency=1 major_base=G major_cov=51/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/39 RA 506 . NC_000913 4308783 0 G A consensus_score=455.1 frequency=1 major_base=A major_cov=66/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/65 RA 507 . NC_000913 4312125 0 G A consensus_score=588.4 frequency=1 major_base=A major_cov=81/81 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=81/81 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=81/81 RA 508 . NC_000913 4318717 0 C T consensus_score=319.0 frequency=1 major_base=T major_cov=39/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/58 RA 509 . NC_000913 4325644 0 C T bias_e_value=3590590 bias_p_value=0.773558 consensus_score=345.7 fisher_strand_p_value=0.407767 frequency=1 ks_quality_p_value=1 major_base=T major_cov=41/61 major_frequency=9.903e-01 minor_base=G minor_cov=1/0 new_cov=41/61 polymorphism_frequency=9.903e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/61 RA 510 . NC_000913 4331300 0 C T consensus_score=388.9 frequency=1 major_base=T major_cov=51/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/60 RA 511 . NC_000913 4339307 0 C T consensus_score=411.1 frequency=1 major_base=T major_cov=49/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/66 RA 512 . NC_000913 4345284 0 C T consensus_score=357.9 frequency=1 major_base=T major_cov=52/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/48 RA 513 . NC_000913 4357810 0 C T consensus_score=415.8 frequency=1 major_base=T major_cov=57/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/63 RA 514 . NC_000913 4360965 0 C A bias_e_value=7.99842e-11 bias_p_value=1.72318e-17 consensus_reject=FREQUENCY_CUTOFF consensus_score=317.7 fisher_strand_p_value=3.97326e-19 frequency=2.848e-01 ks_quality_p_value=1 major_base=C major_cov=35/83 major_frequency=7.152e-01 minor_base=A minor_cov=47/0 new_cov=47/0 polymorphism_frequency=2.848e-01 polymorphism_score=23.8 prediction=polymorphism ref_cov=35/83 total_cov=82/83 RA 515 . NC_000913 4368347 0 C T consensus_score=526.9 frequency=1 major_base=T major_cov=88/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=88/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=88/61 RA 516 . NC_000913 4375493 0 C T bias_e_value=3935210 bias_p_value=0.847804 consensus_score=402.6 fisher_strand_p_value=0.50178 frequency=1 ks_quality_p_value=1 major_base=T major_cov=53/64 major_frequency=9.832e-01 minor_base=G minor_cov=0/2 new_cov=53/64 polymorphism_frequency=9.832e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/66 RA 517 . NC_000913 4377568 0 C T consensus_score=497.6 frequency=1 major_base=T major_cov=82/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=82/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=82/54 RA 518 . NC_000913 4392997 0 G A consensus_score=681.7 frequency=1 major_base=A major_cov=67/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/120 RA 519 . NC_000913 4393552 0 G A consensus_score=456.6 frequency=1 major_base=A major_cov=71/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/54 RA 520 . NC_000913 4394251 0 C T consensus_score=299.8 frequency=1 major_base=T major_cov=47/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/37 RA 521 . NC_000913 4396373 0 C T bias_e_value=3848220 bias_p_value=0.829063 consensus_score=299.0 fisher_strand_p_value=0.47561 frequency=1 ks_quality_p_value=1 major_base=T major_cov=38/43 major_frequency=9.878e-01 minor_base=C minor_cov=1/0 new_cov=38/43 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/43 RA 522 . NC_000913 4396772 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=255.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/33 major_frequency=9.853e-01 minor_base=T minor_cov=0/1 new_cov=34/33 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=34/34 RA 523 . NC_000913 4425688 0 C A bias_e_value=3923270 bias_p_value=0.845232 consensus_score=395.0 fisher_strand_p_value=0.498069 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/52 major_frequency=9.821e-01 minor_base=G minor_cov=2/0 new_cov=58/52 polymorphism_frequency=9.821e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/52 RA 524 . NC_000913 4425696 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=389.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=57/51 major_frequency=9.908e-01 minor_base=G minor_cov=1/0 new_cov=57/51 polymorphism_frequency=9.908e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/51 RA 525 . NC_000913 4439165 0 C T bias_e_value=3735870 bias_p_value=0.804858 consensus_score=569.1 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=1 major_base=T major_cov=90/71 major_frequency=9.938e-01 minor_base=C minor_cov=0/1 new_cov=90/71 polymorphism_frequency=9.938e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=90/72 RA 526 . NC_000913 4441587 0 C T bias_e_value=3751870 bias_p_value=0.808304 consensus_score=426.6 fisher_strand_p_value=0.452381 frequency=1 ks_quality_p_value=0.991906 major_base=T major_cov=69/56 major_frequency=9.921e-01 minor_base=C minor_cov=0/1 new_cov=69/56 polymorphism_frequency=9.921e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=0/1 total_cov=69/57 RA 527 . NC_000913 4452269 0 C T consensus_score=432.8 frequency=1 major_base=T major_cov=64/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/63 RA 528 . NC_000913 4459323 0 C T consensus_score=502.2 frequency=1 major_base=T major_cov=84/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/53 RA 529 . NC_000913 4487727 0 C T bias_e_value=3669730 bias_p_value=0.790609 consensus_score=409.0 fisher_strand_p_value=0.42735 frequency=1 ks_quality_p_value=0.999853 major_base=T major_cov=67/49 major_frequency=9.915e-01 minor_base=G minor_cov=0/1 new_cov=67/49 polymorphism_frequency=9.915e-01 polymorphism_score=-6.6 prediction=consensus ref_cov=0/0 total_cov=67/50 RA 530 . NC_000913 4488658 0 C T bias_e_value=3551490 bias_p_value=0.765136 consensus_score=428.3 fisher_strand_p_value=0.398496 frequency=1 ks_quality_p_value=1 major_base=T major_cov=52/80 major_frequency=9.925e-01 minor_base=C minor_cov=1/0 new_cov=52/80 polymorphism_frequency=9.925e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=53/80 RA 531 . NC_000913 4495234 0 C T consensus_score=319.3 frequency=1 major_base=T major_cov=49/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/39 RA 532 . NC_000913 4495531 0 C T consensus_score=310.7 frequency=1 major_base=T major_cov=48/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/42 RA 533 . NC_000913 4510238 0 T G bias_e_value=603306 bias_p_value=0.129977 consensus_score=514.2 fisher_strand_p_value=0.0285219 frequency=1 ks_quality_p_value=1 major_base=G major_cov=74/72 major_frequency=9.605e-01 minor_base=T minor_cov=0/6 new_cov=74/72 polymorphism_frequency=9.605e-01 polymorphism_score=NA prediction=consensus ref_cov=0/6 total_cov=74/78 RA 534 . NC_000913 4523680 0 C T consensus_score=294.7 frequency=1 major_base=T major_cov=40/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/45 RA 535 . NC_000913 4523712 0 C T consensus_score=326.7 frequency=1 major_base=T major_cov=42/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/50 RA 536 . NC_000913 4532409 0 T G consensus_score=408.7 frequency=1 major_base=G major_cov=60/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/51 RA 537 . NC_000913 4546601 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=599.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=85/85 major_frequency=9.884e-01 minor_base=G minor_cov=1/1 new_cov=85/85 polymorphism_frequency=9.884e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/0 total_cov=86/86 RA 538 . NC_000913 4636925 0 G C consensus_score=359.4 frequency=1 major_base=C major_cov=51/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/43 RA 539 . NC_000913 4638240 0 G A consensus_score=487.7 frequency=1 major_base=A major_cov=79/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=79/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=79/61 MC 540 . NC_000913 257908 258683 768 0 left_inside_cov=0 left_outside_cov=158 right_inside_cov=3 right_outside_cov=161 MC 541 . NC_000913 696831 696939 0 0 left_inside_cov=0 left_outside_cov=57 right_inside_cov=37 right_outside_cov=94 MC 542 . NC_000913 1196325 1211442 0 0 left_inside_cov=33 left_outside_cov=39 right_inside_cov=38 right_outside_cov=39 MC 543 . NC_000913 1978495 1979270 0 767 left_inside_cov=0 left_outside_cov=151 right_inside_cov=0 right_outside_cov=160 MC 544 . NC_000913 2558699 2565488 0 0 left_inside_cov=0 left_outside_cov=104 right_inside_cov=3 right_outside_cov=107 MC 545 . NC_000913 3423824 3424477 410 238 left_inside_cov=38 left_outside_cov=39 right_inside_cov=38 right_outside_cov=39 MC 546 . NC_000913 3708467 3708621 0 0 left_inside_cov=0 left_outside_cov=52 right_inside_cov=32 right_outside_cov=41 JC 547 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=88 coverage_plus=81 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=294 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=292 max_left_minus=292 max_left_plus=271 max_min_left=149 max_min_left_minus=149 max_min_left_plus=140 max_min_right=148 max_min_right_minus=148 max_min_right_plus=142 max_pos_hash_score=590 max_right=285 max_right_minus=281 max_right_plus=285 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.37 new_junction_read_count=170 polymorphism_frequency=1.000e+00 pos_hash_score=78 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=169 JC 548 . NC_000913 126288 -1 NC_000913 126829 1 0 alignment_overlap=18 coverage_minus=2 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=6.239e-02 junction_possible_overlap_registers=276 key=NC_000913__126288__-1__NC_000913__126811__1__18____300__300__0__0 max_left=123 max_left_minus=123 max_left_plus=123 max_min_left=58 max_min_left_minus=0 max_min_left_plus=58 max_min_right=40 max_min_right_minus=23 max_min_right_plus=40 max_pos_hash_score=554 max_right=111 max_right_minus=23 max_right_plus=111 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.06 new_junction_read_count=7 polymorphism_frequency=6.239e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.87 side_1_overlap=18 side_1_possible_overlap_registers=294 side_1_read_count=108 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.94 side_2_overlap=0 side_2_possible_overlap_registers=276 side_2_read_count=109 side_2_redundant=0 total_non_overlap_reads=6 JC 549 . NC_000913 177240 -1 NC_000913 177502 1 0 alignment_overlap=10 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.586e-02 junction_possible_overlap_registers=284 key=NC_000913__177240__-1__NC_000913__177492__1__10____300__300__0__0 max_left=259 max_left_minus=114 max_left_plus=259 max_min_left=114 max_min_left_minus=114 max_min_left_plus=114 max_min_right=29 max_min_right_minus=0 max_min_right_plus=29 max_pos_hash_score=570 max_right=172 max_right_minus=172 max_right_plus=172 neg_log10_pos_hash_p_value=9.6 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.586e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.94 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=117 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.94 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=113 side_2_redundant=0 total_non_overlap_reads=3 JC 550 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=60 coverage_plus=97 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=286 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=289 max_left_minus=289 max_left_plus=287 max_min_left=143 max_min_left_minus=133 max_min_left_plus=143 max_min_right=144 max_min_right_minus=132 max_min_right_plus=144 max_pos_hash_score=574 max_right=290 max_right_minus=290 max_right_plus=283 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.31 new_junction_read_count=158 polymorphism_frequency=1.000e+00 pos_hash_score=77 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=157 JC 551 . NC_000913 349614 -1 NC_000913 349894 1 0 alignment_overlap=15 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.331e-02 junction_possible_overlap_registers=279 key=NC_000913__349614__-1__NC_000913__349879__1__15____300__300__0__0 max_left=217 max_left_minus=217 max_left_plus=96 max_min_left=96 max_min_left_minus=86 max_min_left_plus=96 max_min_right=67 max_min_right_minus=67 max_min_right_plus=0 max_pos_hash_score=560 max_right=212 max_right_minus=198 max_right_plus=212 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=4.331e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.68 side_1_overlap=15 side_1_possible_overlap_registers=294 side_1_read_count=84 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.82 side_2_overlap=0 side_2_possible_overlap_registers=279 side_2_read_count=97 side_2_redundant=0 total_non_overlap_reads=4 JC 552 . NC_000913 696830 -1 NC_000913 696940 1 0 alignment_overlap=77 coverage_minus=25 coverage_plus=32 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=217 key=NC_000913__696830__-1__NC_000913__696863__1__77____300__300__0__0 max_left=216 max_left_minus=207 max_left_plus=216 max_min_left=110 max_min_left_minus=110 max_min_left_plus=80 max_min_right=83 max_min_right_minus=75 max_min_right_plus=83 max_pos_hash_score=436 max_right=221 max_right_minus=206 max_right_plus=221 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.62 new_junction_read_count=57 polymorphism_frequency=1.000e+00 pos_hash_score=41 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=77 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=57 JC 553 . NC_000913 732239 -1 NC_000913 732420 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.785e-02 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__732408__1__12____300__300__0__0 max_left=257 max_left_minus=145 max_left_plus=257 max_min_left=71 max_min_left_minus=56 max_min_left_plus=71 max_min_right=143 max_min_right_minus=143 max_min_right_plus=30 max_pos_hash_score=566 max_right=215 max_right_minus=143 max_right_plus=215 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=6.785e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.52 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=64 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.64 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=76 side_2_redundant=0 total_non_overlap_reads=5 JC 554 . NC_000913 732239 -1 NC_000913 3622029 1 0 alignment_overlap=12 coverage_minus=1 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.571e-01 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0 max_left=257 max_left_minus=191 max_left_plus=257 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=100 max_min_right_minus=92 max_min_right_plus=100 max_pos_hash_score=566 max_right=100 max_right_minus=92 max_right_plus=100 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=1.571e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.52 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=64 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.03 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=3 side_2_redundant=0 total_non_overlap_reads=6 JC 555 . NC_000913 732239 -1 NC_000913 3765020 1 0 alignment_overlap=12 coverage_minus=1 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.531e-01 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0 max_left=257 max_left_minus=191 max_left_plus=257 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=100 max_min_right_minus=92 max_min_right_plus=100 max_pos_hash_score=566 max_right=100 max_right_minus=92 max_right_plus=100 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=1.531e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.52 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=64 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.04 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=5 side_2_redundant=0 total_non_overlap_reads=6 JC 556 . NC_000913 732408 1 NC_000913 3621836 -1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.014e-02 junction_possible_overlap_registers=282 key=NC_000913__732408__1__NC_000913__3621848__-1__12____300__300__0__1 max_left=215 max_left_minus=215 max_left_plus=143 max_min_left=143 max_min_left_minus=0 max_min_left_plus=143 max_min_right=71 max_min_right_minus=71 max_min_right_plus=56 max_pos_hash_score=566 max_right=145 max_right_minus=71 max_right_plus=145 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=5.014e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=4 JC 557 . NC_000913 734148 1 NC_000913 3621446 -1 -34 alignment_overlap=-34 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.949e-02 junction_possible_overlap_registers=260 key=NC_000913__734148__1__NC_000913__3621446__-1__-34__GCGGATATCCAGATTCGTTGCGGTGGTGTGAACG__300__300__0__1 max_left=128 max_left_minus=128 max_left_plus=74 max_min_left=74 max_min_left_minus=74 max_min_left_plus=74 max_min_right=17 max_min_right_minus=17 max_min_right_plus=0 max_pos_hash_score=522 max_right=131 max_right_minus=131 max_right_plus=131 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=3.949e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=110 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=4 unique_read_sequence=GCGGATATCCAGATTCGTTGCGGTGGTGTGAACG JC 558 . NC_000913 780918 -1 NC_000913 781445 1 0 alignment_overlap=76 coverage_minus=5 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.080e-01 junction_possible_overlap_registers=218 key=NC_000913__780918__-1__NC_000913__781369__1__76____300__300__0__0 max_left=121 max_left_minus=121 max_left_plus=74 max_min_left=49 max_min_left_minus=49 max_min_left_plus=49 max_min_right=50 max_min_right_minus=49 max_min_right_plus=50 max_pos_hash_score=438 max_right=90 max_right_minus=88 max_right_plus=90 neg_log10_pos_hash_p_value=5.8 new_junction_coverage=0.10 new_junction_read_count=9 polymorphism_frequency=1.080e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.82 side_1_overlap=76 side_1_possible_overlap_registers=294 side_1_read_count=102 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=218 side_2_read_count=73 side_2_redundant=0 total_non_overlap_reads=9 JC 559 . NC_000913 781222 -1 NC_000913 781445 1 0 alignment_overlap=76 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.472e-02 junction_possible_overlap_registers=218 key=NC_000913__781222__-1__NC_000913__781369__1__76____300__300__0__0 max_left=220 max_left_minus=220 max_left_plus=98 max_min_left=98 max_min_left_minus=1 max_min_left_plus=98 max_min_right=4 max_min_right_minus=4 max_min_right_plus=0 max_pos_hash_score=438 max_right=126 max_right_minus=68 max_right_plus=126 neg_log10_pos_hash_p_value=8.2 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.472e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.06 side_1_overlap=76 side_1_possible_overlap_registers=294 side_1_read_count=132 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=218 side_2_read_count=73 side_2_redundant=0 total_non_overlap_reads=4 JC 560 . NC_000913 781282 -1 NC_000913 781771 1 0 alignment_overlap=8 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.019e-02 junction_possible_overlap_registers=286 key=NC_000913__781282__-1__NC_000913__781763__1__8____300__300__0__0 max_left=75 max_left_minus=75 max_left_plus=70 max_min_left=70 max_min_left_minus=70 max_min_left_plus=70 max_min_right=61 max_min_right_minus=61 max_min_right_plus=47 max_pos_hash_score=574 max_right=117 max_right_minus=117 max_right_plus=111 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.06 new_junction_read_count=7 polymorphism_frequency=6.019e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=125 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.80 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=97 side_2_redundant=0 total_non_overlap_reads=7 JC 561 . NC_000913 781369 1 NC_000913 2521006 -1 -2 alignment_overlap=-2 coverage_minus=4 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.793e-02 junction_possible_overlap_registers=292 key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0 max_left=166 max_left_minus=166 max_left_plus=164 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=72 max_min_right_minus=72 max_min_right_plus=47 max_pos_hash_score=586 max_right=72 max_right_minus=72 max_right_plus=47 neg_log10_pos_hash_p_value=8.6 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=4.793e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.93 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=115 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=125 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=GG JC 562 . NC_000913 781369 1 NC_000913 2521127 -1 -1 alignment_overlap=-1 coverage_minus=4 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.351e-02 junction_possible_overlap_registers=293 key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0 max_left=166 max_left_minus=166 max_left_plus=164 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=73 max_min_right_minus=73 max_min_right_plus=48 max_pos_hash_score=588 max_right=73 max_right_minus=73 max_right_plus=48 neg_log10_pos_hash_p_value=8.6 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=5.351e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.93 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=115 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=98 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=G JC 563 . NC_000913 781577 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=4 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=7.299e-02 junction_possible_overlap_registers=290 key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0 max_left=210 max_left_minus=210 max_left_plus=210 max_min_left=63 max_min_left_minus=0 max_min_left_plus=63 max_min_right=118 max_min_right_minus=118 max_min_right_plus=100 max_pos_hash_score=582 max_right=232 max_right_minus=118 max_right_plus=232 neg_log10_pos_hash_p_value=7.2 new_junction_coverage=0.07 new_junction_read_count=8 polymorphism_frequency=7.299e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=81 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=125 side_2_redundant=0 total_non_overlap_reads=8 unique_read_sequence=GAAG JC 564 . NC_000913 901834 -1 NC_000913 902174 1 0 alignment_overlap=8 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.292e-02 junction_possible_overlap_registers=286 key=NC_000913__901834__-1__NC_000913__902166__1__8____300__300__0__0 max_left=155 max_left_minus=155 max_left_plus=133 max_min_left=133 max_min_left_minus=85 max_min_left_plus=133 max_min_right=137 max_min_right_minus=137 max_min_right_plus=0 max_pos_hash_score=574 max_right=178 max_right_minus=178 max_right_plus=178 neg_log10_pos_hash_p_value=9.0 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=3.292e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=111 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=127 side_2_redundant=0 total_non_overlap_reads=4 JC 565 . NC_000913 916595 -1 NC_000913 916778 1 0 alignment_overlap=11 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.500e-02 junction_possible_overlap_registers=283 key=NC_000913__916595__-1__NC_000913__916767__1__11____300__300__0__0 max_left=161 max_left_minus=161 max_left_plus=69 max_min_left=100 max_min_left_minus=100 max_min_left_plus=69 max_min_right=127 max_min_right_minus=127 max_min_right_plus=0 max_pos_hash_score=568 max_right=220 max_right_minus=189 max_right_plus=220 neg_log10_pos_hash_p_value=9.6 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.500e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.08 side_1_overlap=11 side_1_possible_overlap_registers=294 side_1_read_count=134 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=105 side_2_redundant=0 total_non_overlap_reads=3 JC 566 . NC_000913 1286728 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.134e-02 junction_possible_overlap_registers=274 key=NC_000913__1286728__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=124 max_left_minus=124 max_left_plus=124 max_min_left=13 max_min_left_minus=13 max_min_left_plus=13 max_min_right=34 max_min_right_minus=34 max_min_right_plus=34 max_pos_hash_score=550 max_right=34 max_right_minus=34 max_right_plus=34 neg_log10_pos_hash_p_value=8.8 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=5.134e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=91 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.54 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=63 side_2_redundant=0 total_non_overlap_reads=4 JC 567 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=9.591e-02 junction_possible_overlap_registers=274 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=243 max_left_minus=224 max_left_plus=243 max_min_left=4 max_min_left_minus=0 max_min_left_plus=4 max_min_right=60 max_min_right_minus=54 max_min_right_plus=60 max_pos_hash_score=550 max_right=276 max_right_minus=54 max_right_plus=276 neg_log10_pos_hash_p_value=7.3 new_junction_coverage=0.06 new_junction_read_count=7 polymorphism_frequency=9.591e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.60 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=74 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.54 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=63 side_2_redundant=0 total_non_overlap_reads=7 JC 568 . NC_000913 1286906 -1 NC_000913 4175537 -1 0 alignment_overlap=19 coverage_minus=3 coverage_plus=0 flanking_left=300 flanking_right=300 frequency=2.910e-02 junction_possible_overlap_registers=275 key=NC_000913__1286906__-1__NC_000913__4175556__-1__19____300__300__0__0 max_left=176 max_left_minus=176 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=2 max_min_right_minus=2 max_min_right_plus=0 max_pos_hash_score=552 max_right=2 max_right_minus=2 max_right_plus=0 neg_log10_pos_hash_p_value=9.4 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.910e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.60 side_1_overlap=19 side_1_possible_overlap_registers=294 side_1_read_count=74 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=275 side_2_read_count=131 side_2_redundant=0 total_non_overlap_reads=3 JC 569 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.490e-02 junction_possible_overlap_registers=274 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=104 max_left_minus=104 max_left_plus=93 max_min_left=4 max_min_left_minus=0 max_min_left_plus=4 max_min_right=51 max_min_right_minus=51 max_min_right_plus=34 max_pos_hash_score=550 max_right=276 max_right_minus=51 max_right_plus=276 neg_log10_pos_hash_p_value=8.8 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=6.490e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=87 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.54 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=63 side_2_redundant=0 total_non_overlap_reads=4 JC 570 . NC_000913 1287262 -1 NC_000913 1287382 1 0 alignment_overlap=21 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.236e-02 junction_possible_overlap_registers=273 key=NC_000913__1287262__-1__NC_000913__1287361__1__21____300__300__0__0 max_left=162 max_left_minus=162 max_left_plus=140 max_min_left=121 max_min_left_minus=121 max_min_left_plus=21 max_min_right=139 max_min_right_minus=117 max_min_right_plus=139 max_pos_hash_score=548 max_right=253 max_right_minus=157 max_right_plus=253 neg_log10_pos_hash_p_value=8.2 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=6.236e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.75 side_1_overlap=21 side_1_possible_overlap_registers=294 side_1_read_count=93 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.56 side_2_overlap=0 side_2_possible_overlap_registers=273 side_2_read_count=64 side_2_redundant=0 total_non_overlap_reads=5 JC 571 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=72 coverage_plus=76 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=295 max_left_minus=295 max_left_plus=294 max_min_left=146 max_min_left_minus=139 max_min_left_plus=146 max_min_right=139 max_min_right_minus=139 max_min_right_plus=139 max_pos_hash_score=582 max_right=295 max_right_minus=289 max_right_plus=295 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.24 new_junction_read_count=152 polymorphism_frequency=1.000e+00 pos_hash_score=86 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=148 JC 572 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=78 coverage_plus=71 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0 max_left=294 max_left_minus=279 max_left_plus=294 max_min_left=148 max_min_left_minus=139 max_min_left_plus=148 max_min_right=148 max_min_right_minus=148 max_min_right_plus=139 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=281 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.22 new_junction_read_count=152 polymorphism_frequency=1.000e+00 pos_hash_score=87 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=149 JC 573 . NC_000913 1743651 -1 NC_000913 1743964 1 0 alignment_overlap=6 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.943e-02 junction_possible_overlap_registers=288 key=NC_000913__1743651__-1__NC_000913__1743958__1__6____300__300__0__0 max_left=184 max_left_minus=184 max_left_plus=183 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=83 max_min_right_minus=83 max_min_right_plus=83 max_pos_hash_score=578 max_right=83 max_right_minus=83 max_right_plus=83 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=3.943e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.84 side_1_overlap=6 side_1_possible_overlap_registers=294 side_1_read_count=104 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=93 side_2_redundant=0 total_non_overlap_reads=4 JC 574 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=63 coverage_plus=91 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1 max_left=299 max_left_minus=298 max_left_plus=299 max_min_left=144 max_min_left_minus=139 max_min_left_plus=144 max_min_right=146 max_min_right_minus=146 max_min_right_plus=134 max_pos_hash_score=590 max_right=292 max_right_minus=291 max_right_plus=292 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.29 new_junction_read_count=160 polymorphism_frequency=1.000e+00 pos_hash_score=94 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=154 JC 575 . NC_000913 2357730 -1 NC_000913 2357926 1 0 alignment_overlap=40 coverage_minus=1 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=5.182e-02 junction_possible_overlap_registers=254 key=NC_000913__2357730__-1__NC_000913__2357886__1__40____300__300__0__0 max_left=248 max_left_minus=164 max_left_plus=248 max_min_left=75 max_min_left_minus=0 max_min_left_plus=75 max_min_right=95 max_min_right_minus=95 max_min_right_plus=46 max_pos_hash_score=510 max_right=197 max_right_minus=95 max_right_plus=197 neg_log10_pos_hash_p_value=7.0 new_junction_coverage=0.07 new_junction_read_count=7 polymorphism_frequency=5.182e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.23 side_1_overlap=40 side_1_possible_overlap_registers=294 side_1_read_count=153 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.16 side_2_overlap=0 side_2_possible_overlap_registers=254 side_2_read_count=124 side_2_redundant=0 total_non_overlap_reads=7 JC 576 . NC_000913 2514274 1 NC_000913 2955099 -1 0 alignment_overlap=3 coverage_minus=70 coverage_plus=38 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__2514274__1__NC_000913__2955102__-1__3____300__300__1__0 max_left=292 max_left_minus=291 max_left_plus=292 max_min_left=137 max_min_left_minus=137 max_min_left_plus=133 max_min_right=148 max_min_right_minus=147 max_min_right_plus=148 max_pos_hash_score=584 max_right=293 max_right_minus=293 max_right_plus=273 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.93 new_junction_read_count=114 polymorphism_frequency=1.000e+00 pos_hash_score=73 prediction=consensus read_count_offset=6 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=3 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=108 JC 577 . NC_000913 2515616 -1 NC_000913 2955094 1 0 alignment_overlap=3 coverage_minus=64 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__2515616__-1__NC_000913__2955091__1__3____300__300__1__0 max_left=296 max_left_minus=292 max_left_plus=296 max_min_left=148 max_min_left_minus=142 max_min_left_plus=148 max_min_right=144 max_min_right_minus=133 max_min_right_plus=144 max_pos_hash_score=584 max_right=292 max_right_minus=292 max_right_plus=290 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.99 new_junction_read_count=122 polymorphism_frequency=1.000e+00 pos_hash_score=70 prediction=consensus read_count_offset=6 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=3 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 578 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=50 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=286 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0 max_left=281 max_left_minus=281 max_left_plus=263 max_min_left=145 max_min_left_minus=140 max_min_left_plus=145 max_min_right=139 max_min_right_minus=126 max_min_right_plus=139 max_pos_hash_score=574 max_right=286 max_right_minus=276 max_right_plus=286 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.86 new_junction_read_count=104 polymorphism_frequency=1.000e+00 pos_hash_score=66 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=103 JC 579 . NC_000913 2653389 -1 NC_000913 2653716 1 0 alignment_overlap=5 coverage_minus=2 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=4.196e-02 junction_possible_overlap_registers=289 key=NC_000913__2653389__-1__NC_000913__2653711__1__5____300__300__0__0 max_left=101 max_left_minus=101 max_left_plus=60 max_min_left=101 max_min_left_minus=101 max_min_left_plus=60 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=580 max_right=241 max_right_minus=199 max_right_plus=241 neg_log10_pos_hash_p_value=8.1 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=4.196e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.97 side_1_overlap=5 side_1_possible_overlap_registers=294 side_1_read_count=120 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.28 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=156 side_2_redundant=0 total_non_overlap_reads=6 JC 580 . NC_000913 2653419 -1 NC_000913 2653746 1 0 alignment_overlap=25 coverage_minus=6 coverage_plus=7 flanking_left=300 flanking_right=300 frequency=9.715e-02 junction_possible_overlap_registers=269 key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0 max_left=181 max_left_minus=181 max_left_plus=181 max_min_left=129 max_min_left_minus=129 max_min_left_plus=69 max_min_right=42 max_min_right_minus=42 max_min_right_plus=42 max_pos_hash_score=540 max_right=265 max_right_minus=265 max_right_plus=233 neg_log10_pos_hash_p_value=5.8 new_junction_coverage=0.11 new_junction_read_count=13 polymorphism_frequency=9.715e-02 pos_hash_score=11 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.98 side_1_overlap=25 side_1_possible_overlap_registers=294 side_1_read_count=122 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=269 side_2_read_count=130 side_2_redundant=0 total_non_overlap_reads=13 JC 581 . NC_000913 2877792 -1 NC_000913 2878283 1 0 alignment_overlap=19 coverage_minus=4 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.323e-02 junction_possible_overlap_registers=275 key=NC_000913__2877792__-1__NC_000913__2878264__1__19____300__300__0__0 max_left=214 max_left_minus=214 max_left_plus=90 max_min_left=90 max_min_left_minus=90 max_min_left_plus=90 max_min_right=1 max_min_right_minus=1 max_min_right_plus=0 max_pos_hash_score=552 max_right=144 max_right_minus=144 max_right_plus=144 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.06 new_junction_read_count=7 polymorphism_frequency=6.323e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.82 side_1_overlap=19 side_1_possible_overlap_registers=294 side_1_read_count=102 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.96 side_2_overlap=0 side_2_possible_overlap_registers=275 side_2_read_count=112 side_2_redundant=0 total_non_overlap_reads=7 JC 582 . NC_000913 2878282 -1 NC_000913 2878466 1 0 alignment_overlap=31 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.293e-02 junction_possible_overlap_registers=263 key=NC_000913__2878282__-1__NC_000913__2878435__1__31____300__300__0__0 max_left=78 max_left_minus=78 max_left_plus=78 max_min_left=78 max_min_left_minus=78 max_min_left_plus=78 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=528 max_right=250 max_right_minus=250 max_right_plus=135 neg_log10_pos_hash_p_value=9.2 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.293e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=31 side_1_possible_overlap_registers=294 side_1_read_count=126 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.29 side_2_overlap=0 side_2_possible_overlap_registers=263 side_2_read_count=143 side_2_redundant=0 total_non_overlap_reads=3 JC 583 . NC_000913 2904102 -1 NC_000913 2904347 1 0 alignment_overlap=28 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.040e-02 junction_possible_overlap_registers=266 key=NC_000913__2904102__-1__NC_000913__2904319__1__28____300__300__0__0 max_left=223 max_left_minus=223 max_left_plus=161 max_min_left=72 max_min_left_minus=72 max_min_left_plus=0 max_min_right=110 max_min_right_minus=47 max_min_right_plus=110 max_pos_hash_score=534 max_right=200 max_right_minus=200 max_right_plus=110 neg_log10_pos_hash_p_value=9.2 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.040e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.81 side_1_overlap=28 side_1_possible_overlap_registers=294 side_1_read_count=101 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=266 side_2_read_count=100 side_2_redundant=0 total_non_overlap_reads=3 JC 584 . NC_000913 2913392 1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=63 coverage_plus=82 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1 max_left=295 max_left_minus=295 max_left_plus=295 max_min_left=144 max_min_left_minus=144 max_min_left_plus=139 max_min_right=143 max_min_right_minus=130 max_min_right_plus=143 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=287 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.27 new_junction_read_count=158 polymorphism_frequency=1.000e+00 pos_hash_score=77 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=145 JC 585 . NC_000913 2913396 -1 NC_000913 2996361 1 0 alignment_overlap=0 coverage_minus=65 coverage_plus=76 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1 max_left=295 max_left_minus=293 max_left_plus=295 max_min_left=140 max_min_left_minus=136 max_min_left_plus=140 max_min_right=150 max_min_right_minus=150 max_min_right_plus=142 max_pos_hash_score=590 max_right=289 max_right_minus=289 max_right_plus=280 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.16 new_junction_read_count=144 polymorphism_frequency=1.000e+00 pos_hash_score=81 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=141 JC 586 . NC_000913 2945056 -1 NC_000913 2945441 1 0 alignment_overlap=10 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.814e-02 junction_possible_overlap_registers=284 key=NC_000913__2945056__-1__NC_000913__2945431__1__10____300__300__0__0 max_left=178 max_left_minus=178 max_left_plus=178 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=55 max_min_right_minus=55 max_min_right_plus=55 max_pos_hash_score=570 max_right=55 max_right_minus=55 max_right_plus=55 neg_log10_pos_hash_p_value=9.0 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=3.814e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=95 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.92 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=110 side_2_redundant=0 total_non_overlap_reads=4 JC 587 . NC_000913 2947467 -1 NC_000913 2947688 1 0 alignment_overlap=83 coverage_minus=4 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.179e-01 junction_possible_overlap_registers=211 key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0 max_left=210 max_left_minus=210 max_left_plus=201 max_min_left=83 max_min_left_minus=74 max_min_left_plus=83 max_min_right=46 max_min_right_minus=46 max_min_right_plus=16 max_pos_hash_score=424 max_right=204 max_right_minus=204 max_right_plus=198 neg_log10_pos_hash_p_value=5.6 new_junction_coverage=0.10 new_junction_read_count=9 polymorphism_frequency=1.179e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=83 side_1_possible_overlap_registers=294 side_1_read_count=97 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.73 side_2_overlap=0 side_2_possible_overlap_registers=211 side_2_read_count=65 side_2_redundant=0 total_non_overlap_reads=9 JC 588 . NC_000913 3133052 1 NC_000913 3306041 -1 0 alignment_overlap=7 coverage_minus=18 coverage_plus=20 flanking_left=300 flanking_right=300 frequency=2.630e-01 junction_possible_overlap_registers=287 key=NC_000913__3133052__1__NC_000913__3306048__-1__7____300__300__0__0 max_left=284 max_left_minus=284 max_left_plus=256 max_min_left=128 max_min_left_minus=125 max_min_left_plus=128 max_min_right=143 max_min_right_minus=143 max_min_right_plus=113 max_pos_hash_score=576 max_right=274 max_right_minus=274 max_right_plus=258 neg_log10_pos_hash_p_value=3.2 new_junction_coverage=0.32 new_junction_read_count=39 polymorphism_frequency=2.630e-01 pos_hash_score=25 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.81 side_1_overlap=7 side_1_possible_overlap_registers=294 side_1_read_count=101 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.99 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=120 side_2_redundant=0 total_non_overlap_reads=38 JC 589 . NC_000913 3230095 -1 NC_000913 3230392 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.720e-02 junction_possible_overlap_registers=285 key=NC_000913__3230095__-1__NC_000913__3230383__1__9____300__300__0__0 max_left=217 max_left_minus=217 max_left_plus=217 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=68 max_min_right_minus=68 max_min_right_plus=68 max_pos_hash_score=572 max_right=68 max_right_minus=68 max_right_plus=68 neg_log10_pos_hash_p_value=9.0 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=3.720e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=96 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=114 side_2_redundant=0 total_non_overlap_reads=4 JC 590 . NC_000913 3270072 1 NC_000913 3639193 1 -10 alignment_overlap=-10 coverage_minus=5 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.352e-02 junction_possible_overlap_registers=284 key=NC_000913__3270072__1__NC_000913__3639193__1__-10__CAGATTGTTG__300__300__0__0 max_left=288 max_left_minus=288 max_left_plus=237 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=43 max_min_right_minus=43 max_min_right_plus=43 max_pos_hash_score=570 max_right=43 max_right_minus=43 max_right_plus=43 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=4.352e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.06 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=131 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=142 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=CAGATTGTTG JC 591 . NC_000913 3270072 1 NC_000913 4137788 1 -25 alignment_overlap=-25 coverage_minus=5 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.385e-02 junction_possible_overlap_registers=269 key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0 max_left=268 max_left_minus=268 max_left_plus=237 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=28 max_min_right_minus=28 max_min_right_plus=28 max_pos_hash_score=540 max_right=28 max_right_minus=28 max_right_plus=28 neg_log10_pos_hash_p_value=7.7 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=4.385e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.06 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=131 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.25 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=155 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA JC 592 . NC_000913 3392102 -1 NC_000913 3392377 1 0 alignment_overlap=33 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.845e-02 junction_possible_overlap_registers=261 key=NC_000913__3392102__-1__NC_000913__3392344__1__33____300__300__0__0 max_left=150 max_left_minus=150 max_left_plus=76 max_min_left=76 max_min_left_minus=54 max_min_left_plus=76 max_min_right=117 max_min_right_minus=117 max_min_right_plus=0 max_pos_hash_score=524 max_right=189 max_right_minus=117 max_right_plus=189 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.845e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.71 side_1_overlap=33 side_1_possible_overlap_registers=294 side_1_read_count=88 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.72 side_2_overlap=0 side_2_possible_overlap_registers=261 side_2_read_count=79 side_2_redundant=0 total_non_overlap_reads=4 JC 593 . NC_000913 3468779 -1 NC_000913 3469104 1 0 alignment_overlap=17 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.729e-02 junction_possible_overlap_registers=277 key=NC_000913__3468779__-1__NC_000913__3469087__1__17____300__300__0__0 max_left=214 max_left_minus=214 max_left_plus=105 max_min_left=92 max_min_left_minus=92 max_min_left_plus=91 max_min_right=29 max_min_right_minus=29 max_min_right_plus=28 max_pos_hash_score=556 max_right=128 max_right_minus=128 max_right_plus=128 neg_log10_pos_hash_p_value=8.8 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=3.729e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.10 side_1_overlap=17 side_1_possible_overlap_registers=294 side_1_read_count=136 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=130 side_2_redundant=0 total_non_overlap_reads=4 JC 594 . NC_000913 3469004 -1 NC_000913 3469308 1 0 alignment_overlap=6 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.729e-02 junction_possible_overlap_registers=288 key=NC_000913__3469004__-1__NC_000913__3469302__1__6____300__300__0__0 max_left=68 max_left_minus=68 max_left_plus=68 max_min_left=68 max_min_left_minus=68 max_min_left_plus=68 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=578 max_right=247 max_right_minus=247 max_right_plus=247 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=2.729e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.11 side_1_overlap=6 side_1_possible_overlap_registers=294 side_1_read_count=138 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.23 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=150 side_2_redundant=0 total_non_overlap_reads=4 JC 595 . NC_000913 3469040 -1 NC_000913 3469344 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.811e-02 junction_possible_overlap_registers=274 key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0 max_left=199 max_left_minus=199 max_left_plus=121 max_min_left=131 max_min_left_minus=131 max_min_left_plus=121 max_min_right=113 max_min_right_minus=113 max_min_right_plus=0 max_pos_hash_score=550 max_right=159 max_right_minus=148 max_right_plus=159 neg_log10_pos_hash_p_value=8.8 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=2.811e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.11 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=138 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.28 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=148 side_2_redundant=0 total_non_overlap_reads=4 JC 596 . NC_000913 3499822 -1 NC_000913 3499828 1 0 alignment_overlap=1 coverage_minus=61 coverage_plus=73 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__3499822__-1__NC_000913__3499827__1__1____300__300__0__0 max_left=295 max_left_minus=295 max_left_plus=293 max_min_left=148 max_min_left_minus=145 max_min_left_plus=148 max_min_right=147 max_min_right_minus=134 max_min_right_plus=147 max_pos_hash_score=588 max_right=298 max_right_minus=294 max_right_plus=298 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.10 new_junction_read_count=136 polymorphism_frequency=9.927e-01 pos_hash_score=71 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=134 JC 597 . NC_000913 3620389 -1 NC_000913 3620948 1 0 alignment_overlap=11 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.758e-02 junction_possible_overlap_registers=283 key=NC_000913__3620400__-1__NC_000913__3620948__1__11____300__300__1__0 max_left=24 max_left_minus=24 max_left_plus=24 max_min_left=11 max_min_left_minus=0 max_min_left_plus=11 max_min_right=24 max_min_right_minus=24 max_min_right_plus=24 max_pos_hash_score=568 max_right=84 max_right_minus=24 max_right_plus=84 neg_log10_pos_hash_p_value=9.6 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=6.758e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.35 side_2_overlap=11 side_2_possible_overlap_registers=294 side_2_read_count=43 side_2_redundant=0 total_non_overlap_reads=3 JC 598 . NC_000913 3621836 -1 NC_000913 3622017 1 0 alignment_overlap=12 coverage_minus=1 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=6.347e-01 junction_possible_overlap_registers=282 key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0 max_left=224 max_left_minus=191 max_left_plus=224 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=100 max_min_right_minus=92 max_min_right_plus=100 max_pos_hash_score=566 max_right=100 max_right_minus=92 max_right_plus=100 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=6.347e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=12 side_2_possible_overlap_registers=294 side_2_read_count=3 side_2_redundant=0 total_non_overlap_reads=5 JC 599 . NC_000913 3648146 -1 NC_000913 3648378 1 0 alignment_overlap=58 coverage_minus=6 coverage_plus=7 flanking_left=300 flanking_right=300 frequency=8.897e-02 junction_possible_overlap_registers=236 key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0 max_left=197 max_left_minus=197 max_left_plus=175 max_min_left=92 max_min_left_minus=92 max_min_left_plus=80 max_min_right=96 max_min_right_minus=96 max_min_right_plus=75 max_pos_hash_score=474 max_right=222 max_right_minus=177 max_right_plus=222 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.13 new_junction_read_count=13 polymorphism_frequency=8.897e-02 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.26 side_1_overlap=58 side_1_possible_overlap_registers=294 side_1_read_count=156 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.41 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=141 side_2_redundant=0 total_non_overlap_reads=13 JC 600 . NC_000913 3708466 -1 NC_000913 3708635 1 0 alignment_overlap=108 coverage_minus=26 coverage_plus=25 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=186 key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0 max_left=177 max_left_minus=158 max_left_plus=177 max_min_left=90 max_min_left_minus=90 max_min_left_plus=55 max_min_right=92 max_min_right_minus=91 max_min_right_plus=92 max_pos_hash_score=374 max_right=191 max_right_minus=191 max_right_plus=189 neg_log10_pos_hash_p_value=1.0 new_junction_coverage=0.66 new_junction_read_count=52 polymorphism_frequency=1.000e+00 pos_hash_score=31 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=108 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=186 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=51 JC 601 . NC_000913 3763380 -1 NC_000913 3763939 1 0 alignment_overlap=11 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=7.400e-02 junction_possible_overlap_registers=283 key=NC_000913__3763391__-1__NC_000913__3763939__1__11____300__300__1__0 max_left=24 max_left_minus=24 max_left_plus=24 max_min_left=11 max_min_left_minus=0 max_min_left_plus=11 max_min_right=24 max_min_right_minus=24 max_min_right_plus=24 max_pos_hash_score=568 max_right=84 max_right_minus=24 max_right_plus=84 neg_log10_pos_hash_p_value=9.6 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=7.400e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.31 side_2_overlap=11 side_2_possible_overlap_registers=294 side_2_read_count=39 side_2_redundant=0 total_non_overlap_reads=3 JC 602 . NC_000913 3764827 -1 NC_000913 3765008 1 0 alignment_overlap=12 coverage_minus=1 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=5.104e-01 junction_possible_overlap_registers=282 key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0 max_left=224 max_left_minus=191 max_left_plus=224 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=100 max_min_right_minus=92 max_min_right_plus=100 max_pos_hash_score=566 max_right=100 max_right_minus=92 max_right_plus=100 neg_log10_pos_hash_p_value=8.9 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=5.104e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.04 side_2_overlap=12 side_2_possible_overlap_registers=294 side_2_read_count=5 side_2_redundant=0 total_non_overlap_reads=5 JC 603 . NC_000913 3775549 -1 NC_000913 3775744 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.463e-02 junction_possible_overlap_registers=282 key=NC_000913__3775549__-1__NC_000913__3775732__1__12____300__300__0__0 max_left=105 max_left_minus=105 max_left_plus=28 max_min_left=105 max_min_left_minus=105 max_min_left_plus=28 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=566 max_right=259 max_right_minus=207 max_right_plus=259 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.463e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.87 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=108 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=134 side_2_redundant=0 total_non_overlap_reads=3 JC 604 . NC_000913 3822646 1 NC_000913 3822651 -1 0 alignment_overlap=0 coverage_minus=56 coverage_plus=72 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0 max_left=297 max_left_minus=293 max_left_plus=297 max_min_left=148 max_min_left_minus=148 max_min_left_plus=144 max_min_right=145 max_min_right_minus=145 max_min_right_plus=136 max_pos_hash_score=590 max_right=299 max_right_minus=299 max_right_plus=288 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.07 new_junction_read_count=133 polymorphism_frequency=9.708e-01 pos_hash_score=70 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.06 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=8 side_2_redundant=0 total_non_overlap_reads=128 JC 605 . NC_000913 3949349 -1 NC_000913 3949705 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.324e-02 junction_possible_overlap_registers=285 key=NC_000913__3949349__-1__NC_000913__3949696__1__9____300__300__0__0 max_left=275 max_left_minus=275 max_left_plus=62 max_min_left=62 max_min_left_minus=62 max_min_left_plus=62 max_min_right=3 max_min_right_minus=3 max_min_right_plus=0 max_pos_hash_score=572 max_right=168 max_right_minus=168 max_right_plus=168 neg_log10_pos_hash_p_value=9.6 new_junction_coverage=0.02 new_junction_read_count=3 polymorphism_frequency=2.324e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=124 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.10 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=132 side_2_redundant=0 total_non_overlap_reads=3 JC 606 . NC_000913 4153411 -1 NC_000913 4153658 1 0 alignment_overlap=41 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.723e-02 junction_possible_overlap_registers=253 key=NC_000913__4153411__-1__NC_000913__4153617__1__41____300__300__0__0 max_left=246 max_left_minus=246 max_left_plus=206 max_min_left=99 max_min_left_minus=0 max_min_left_plus=99 max_min_right=44 max_min_right_minus=44 max_min_right_plus=32 max_pos_hash_score=508 max_right=199 max_right_minus=44 max_right_plus=199 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=6.723e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.84 side_1_overlap=41 side_1_possible_overlap_registers=294 side_1_read_count=104 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.72 side_2_overlap=0 side_2_possible_overlap_registers=253 side_2_read_count=77 side_2_redundant=0 total_non_overlap_reads=6 JC 607 . NC_000913 4392437 -1 NC_000913 4392661 1 0 alignment_overlap=78 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=4.654e-02 junction_possible_overlap_registers=216 key=NC_000913__4392437__-1__NC_000913__4392583__1__78____300__300__0__0 max_left=133 max_left_minus=51 max_left_plus=133 max_min_left=51 max_min_left_minus=51 max_min_left_plus=51 max_min_right=91 max_min_right_minus=0 max_min_right_plus=91 max_pos_hash_score=434 max_right=91 max_right_minus=84 max_right_plus=91 neg_log10_pos_hash_p_value=7.6 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.654e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.85 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=106 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.94 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=86 side_2_redundant=0 total_non_overlap_reads=4 JC 608 . NC_000913 4423682 -1 NC_000913 4423809 1 0 alignment_overlap=6 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.851e-02 junction_possible_overlap_registers=288 key=NC_000913__4423682__-1__NC_000913__4423803__1__6____300__300__0__0 max_left=246 max_left_minus=246 max_left_plus=116 max_min_left=116 max_min_left_minus=0 max_min_left_plus=116 max_min_right=65 max_min_right_minus=65 max_min_right_plus=0 max_pos_hash_score=578 max_right=186 max_right_minus=65 max_right_plus=186 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=3.851e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.89 side_1_overlap=6 side_1_possible_overlap_registers=294 side_1_read_count=110 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=92 side_2_redundant=0 total_non_overlap_reads=4 JC 609 . NC_000913 4507459 1 NC_000913 4640419 -1 0 alignment_overlap=2 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.395e-02 junction_possible_overlap_registers=292 key=NC_000913__4507459__1__NC_000913__4640421__-1__2____300__300__1__0 max_left=264 max_left_minus=264 max_left_plus=232 max_min_left=124 max_min_left_minus=0 max_min_left_plus=124 max_min_right=94 max_min_right_minus=94 max_min_right_plus=66 max_pos_hash_score=586 max_right=173 max_right_minus=94 max_right_plus=173 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.03 new_junction_read_count=4 polymorphism_frequency=2.395e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.32 side_2_overlap=0 side_2_possible_overlap_registers=292 side_2_read_count=163 side_2_redundant=0 total_non_overlap_reads=4 JC 610 . NC_000913 4508679 -1 NC_000913 4640418 1 0 alignment_overlap=1 coverage_minus=4 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.907e-02 junction_possible_overlap_registers=293 key=NC_000913__4508679__-1__NC_000913__4640417__1__1____300__300__1__0 max_left=187 max_left_minus=187 max_left_plus=171 max_min_left=133 max_min_left_minus=133 max_min_left_plus=0 max_min_right=128 max_min_right_minus=112 max_min_right_plus=128 max_pos_hash_score=588 max_right=198 max_right_minus=198 max_right_plus=128 neg_log10_pos_hash_p_value=8.6 new_junction_coverage=0.04 new_junction_read_count=5 polymorphism_frequency=2.907e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.35 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=167 side_2_redundant=0 total_non_overlap_reads=5 JC 611 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=15 coverage_plus=11 flanking_left=300 flanking_right=300 frequency=1.395e-01 junction_possible_overlap_registers=285 key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0 max_left=284 max_left_minus=284 max_left_plus=278 max_min_left=141 max_min_left_minus=141 max_min_left_plus=132 max_min_right=136 max_min_right_minus=136 max_min_right_plus=38 max_pos_hash_score=572 max_right=288 max_right_minus=288 max_right_plus=263 neg_log10_pos_hash_p_value=3.6 new_junction_coverage=0.23 new_junction_read_count=28 polymorphism_frequency=1.395e-01 pos_hash_score=22 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.72 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=213 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.16 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=139 side_2_redundant=0 total_non_overlap_reads=26 JC 612 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=13 coverage_plus=12 flanking_left=300 flanking_right=300 frequency=1.231e-01 junction_possible_overlap_registers=285 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0 max_left=273 max_left_minus=255 max_left_plus=273 max_min_left=143 max_min_left_minus=143 max_min_left_plus=132 max_min_right=135 max_min_right_minus=135 max_min_right_plus=129 max_pos_hash_score=572 max_right=287 max_right_minus=260 max_right_plus=287 neg_log10_pos_hash_p_value=4.0 new_junction_coverage=0.21 new_junction_read_count=25 polymorphism_frequency=1.231e-01 pos_hash_score=20 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.81 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=225 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.15 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=138 side_2_redundant=0 total_non_overlap_reads=25 JC 613 . NC_000913 4606166 -1 NC_000913 4606403 1 0 alignment_overlap=89 coverage_minus=3 coverage_plus=8 flanking_left=300 flanking_right=300 frequency=1.325e-01 junction_possible_overlap_registers=205 key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0 max_left=199 max_left_minus=199 max_left_plus=116 max_min_left=98 max_min_left_minus=0 max_min_left_plus=98 max_min_right=95 max_min_right_minus=77 max_min_right_plus=95 max_pos_hash_score=412 max_right=193 max_right_minus=77 max_right_plus=193 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.13 new_junction_read_count=11 polymorphism_frequency=1.325e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.88 side_1_overlap=89 side_1_possible_overlap_registers=294 side_1_read_count=109 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=205 side_2_read_count=68 side_2_redundant=0 total_non_overlap_reads=11 JC 614 . NC_000913 4623377 -1 NC_000913 4623713 1 0 alignment_overlap=8 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=5.132e-02 junction_possible_overlap_registers=286 key=NC_000913__4623377__-1__NC_000913__4623705__1__8____300__300__0__0 max_left=162 max_left_minus=162 max_left_plus=162 max_min_left=121 max_min_left_minus=0 max_min_left_plus=121 max_min_right=131 max_min_right_minus=131 max_min_right_plus=72 max_pos_hash_score=574 max_right=170 max_right_minus=131 max_right_plus=170 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.05 new_junction_read_count=6 polymorphism_frequency=5.132e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.94 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=117 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=108 side_2_redundant=0 total_non_overlap_reads=6 UN 615 . 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