breseq  version 0.39.0  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 581,202 T→A G123G (GGT→GGA)  nohD → putative DNA‑packaging protein NohD
RA 581,275 G→A V148I (GTT→ATT)  nohD → putative DNA‑packaging protein NohD
RA 581,322 C→T A163A (GCC→GCT)  nohD → putative DNA‑packaging protein NohD
RA 581,335 C→A L168I (CTG→ATA)  nohD → putative DNA‑packaging protein NohD
RA 581,337 G→A L168I (CTG→ATA)  nohD → putative DNA‑packaging protein NohD
RA 581,380 2 bp→GG intergenic (+1/‑153) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,388 G→A intergenic (+9/‑146) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,392 T→C intergenic (+13/‑142) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,394 T→C intergenic (+15/‑140) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,397 2 bp→CG intergenic (+18/‑136) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,404 C→G intergenic (+25/‑130) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,407 G→T intergenic (+28/‑127) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,410 T→A intergenic (+31/‑124) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,412 2 bp→TT intergenic (+33/‑121) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,416 A→G intergenic (+37/‑118) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,421 T→A intergenic (+42/‑113) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,423 A→C intergenic (+44/‑111) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,425 G→A intergenic (+46/‑109) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,428 G→T intergenic (+49/‑106) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,434 A→G intergenic (+55/‑100) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,437 G→A intergenic (+58/‑97) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,440 C→G intergenic (+61/‑94) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,443 C→G intergenic (+64/‑91) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,455 G→A intergenic (+76/‑79) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,458 T→C intergenic (+79/‑76) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,460 C→A intergenic (+81/‑74) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,476 G→C intergenic (+97/‑58) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,482 A→G intergenic (+103/‑52) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,485 C→G intergenic (+106/‑49) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
RA 581,488 A→C intergenic (+109/‑46) nohD → / → tfaD putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD
MC JC 1,299,499 Δ1,199 bp insH21 insH21
RA 1,951,320 G→A Q163Q (CAG→CAA)  yecD → isochorismatase family protein YecD
RA 1,951,332 T→C S167S (AGT→AGC)  yecD → isochorismatase family protein YecD
RA 1,951,335 C→T I168I (ATC→ATT)  yecD → isochorismatase family protein YecD
RA 1,951,338 C→T N169N (AAC→AAT)  yecD → isochorismatase family protein YecD
RA 1,951,386 2 bp→TC coding (555‑556/567 nt) yecD → isochorismatase family protein YecD
RA 1,951,412 A→G L6L (CTA→CTG)  yecE → DUF72 domain‑containing protein YecE
RA 1,951,448 G→T G18G (GGG→GGT)  yecE → DUF72 domain‑containing protein YecE
MC JC 1,978,503 Δ776 bp insB5–insA5 insB5, insA5
JC JC 1,995,620 IS5 (–) +4 bp intergenic (‑261/‑32) uvrY ← / → yecU DNA‑binding transcriptional activator UvrY/protein YecU

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 6762 6796 35 3 [1] [1] 2 yaaJ putative transporter YaaJ
* * ÷ NC_000913 47044 47080 37 2 [1] [1] 2 yaaU putative transporter YaaU
* * ÷ NC_000913 51805 51860 56 2 [1] [1] 2 rsmA 16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase
* * ÷ NC_000913 56391 56417 27 2 [1] [1] 2 lptD lipopolysaccharide assembly protein LptD
* * ÷ NC_000913 86076 86367 292 3 [1] [1] 2 ilvI acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit
* * ÷ NC_000913 138224 138428 205 2 [1] [0] 2 cueO multicopper oxidase CueO
* * ÷ NC_000913 144970 144986 17 2 [1] [1] 2 yadI putative PTS enzyme IIA component YadI
* * ÷ NC_000913 164473 164768 296 2 [1] [1] 2 [hrpB]–[mrcB] [hrpB],[mrcB]
* * ÷ NC_000913 165870 165936 67 2 [1] [1] 2 mrcB
mrcB		 peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB
peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB
* * ÷ NC_000913 174311 174418 108 2 [1] [1] 2 hemL glutamate‑1‑semialdehyde 2,1‑aminomutase
* * ÷ NC_000913 180122 180215 94 2 [0] [0] 2 dgt dGTP triphosphohydrolase
* * ÷ NC_000913 194967 195044 78 2 [1] [1] 2 ispU ditrans,polycis‑undecaprenyl‑diphosphate synthase [(2E,6E)‑farnesyl‑diphosphate specific]
* * ÷ NC_000913 195491 195517 27 2 [1] [0] 2 ispU ditrans,polycis‑undecaprenyl‑diphosphate synthase [(2E,6E)‑farnesyl‑diphosphate specific]
* * ÷ NC_000913 237771 237835 65 2 [0] [1] 2 yafT lipoprotein YafT
* * ÷ NC_000913 242666 242806 141 2 [1] [1] 2 fadE acyl‑CoA dehydrogenase
* * ÷ NC_000913 256567 256759 193 3 [1] [1] 2 frsA fermentation‑respiration switch protein
* * ÷ NC_000913 257850 258726 877 2 [1] [0] 2 [crl]–[crl] [crl],insB9,insA9,[crl]
* * ÷ NC_000913 269795 269883 89 2 [1] [0] 2 perR putative transcriptional regulator PerR
* * ÷ NC_000913 270478 271159–270539 62–682 2 [1] [1] 2 [insN]–[insI1] [insN],[insI1]
* * ÷ NC_000913 288313 288440 128 2 [1] [1] 2 [yagH]–[xynR] [yagH],[xynR]
* * ÷ NC_000913 289119 289277 159 2 [1] [1] 2 [xynR] [xynR]
* * ÷ NC_000913 305266 305455 190 2 [1] [1] 3 ecpD fimbrial adhesin EcpD
* * ÷ NC_000913 311775 311927 153 2 [1] [1] 2 matA/ykgL DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL
* * ÷ NC_000913 320927 320987 61 2 [0] [1] 2 rclR DNA‑binding transcriptional activator RclR
* * ÷ NC_000913 321357 321442 86 2 [1] [1] 2 rclR/ykgE DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE
* * ÷ NC_000913 322571 322654 84 3 [1] [1] 3 ykgF putative amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain
* * ÷ NC_000913 325780 325885 106 2 [1] [1] 2 betA choline dehydrogenase
* * ÷ NC_000913 342988 343025 38 2 [0] [1] 3 yahK aldehyde reductase, NADPH‑dependent
* * ÷ NC_000913 357876 357969 94 2 [1] [1] 2 cynR DNA‑binding transcriptional dual regulator CynR
* * ÷ NC_000913 371481 371553 73 2 [1] [1] 3 mhpC 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase
* * ÷ NC_000913 379740 379981 242 2 [1] [1] 2 [frmR] [frmR]
* * ÷ NC_000913 380705 380763 59 2 [1] [0] 2 yaiO outer membrane protein YaiO
* * ÷ NC_000913 384750 384792 43 3 [1] [1] 2 yaiS/tauA putative deacetylase YaiS/taurine ABC transporter periplasmic binding protein
* * ÷ NC_000913 387775 387950 176 2 [1] [1] 2 [tauC]–[tauD] [tauC],[tauD]
* * ÷ NC_000913 388619 388769 151 3 [1] [1] 2 [tauD]–[hemB] [tauD],[hemB]
* * ÷ NC_000913 411704 411770 67 2 [1] [1] 2 araJ putative transport protein AraJ
* * ÷ NC_000913 414093 414215 123 2 [1] [1] 2 sbcC ATP‑dependent structure‑specific DNA nuclease ‑ SbcC subunit
* * ÷ NC_000913 442039 442044 6 2 [1] [1] 2 thiI tRNA uridine 4‑sulfurtransferase
* * ÷ NC_000913 445198 445202 5 2 [0] [1] 2 yajQ/yajR nucleotide binding protein YajQ/putative transport protein YajR
* * ÷ NC_000913 445521 445792 272 2 [0] [1] 2 yajR putative transport protein YajR
* * ÷ NC_000913 459913 460015 103 2 [1] [1] 2 lon Lon protease
* * ÷ NC_000913 462009 462063 55 2 [1] [0] 2 ppiD periplasmic folding chaperone
* * ÷ NC_000913 463157 463183 27 2 [1] [0] 2 ppiD periplasmic folding chaperone
* * ÷ NC_000913 469888 470090 203 2 [1] [1] 2 mdlA ABC transporter family protein MdlA
* * ÷ NC_000913 472182 472191 10 2 [1] [1] 2 mdlB ABC transporter family protein MdlB
* * ÷ NC_000913 478140 478178 39 2 [1] [1] 2 pdeB c‑di‑GMP phosphodiesterase PdeB
* * ÷ NC_000913 480269 480335 67 2 [1] [1] 2 [hha]–[tomB] [hha],[tomB]
* * ÷ NC_000913 501940 501984 45 2 [1] [1] 2 ybaL putative transporter YbaL
* * ÷ NC_000913 503826 503886 61 2 [1] [1] 2 fsr fosmidomycin efflux pump
* * ÷ NC_000913 510852 510982 131 2 [1] [1] 2 copA Cu(+) exporting P‑type ATPase
* * ÷ NC_000913 516950 516992 43 3 [1] [1] 2 fetB putative iron ABC exporter membrane subunit FetB
* * ÷ NC_000913 523083 523366 284 2 [1] [1] 2 [rhsD] [rhsD]
* * ÷ NC_000913 535300 535437 138 2 [1] [1] 2 gcl glyoxylate carboligase
* * ÷ NC_000913 547168 547267 100 2 [1] [1] 2 fdrA putative oxamate carbamoyltransferase FdrA
* * ÷ NC_000913 547890 547963 74 2 [1] [1] 2 fdrA putative oxamate carbamoyltransferase FdrA
* * ÷ NC_000913 579732 579874 143 2 [1] [1] 2 ybcV/ybcW DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW
* * ÷ NC_000913 584413 584476 64 3 [1] [1] 3 [appY] [appY]
* * ÷ NC_000913 624354 624542 189 2 [1] [1] 2 [fepB] [fepB]
* * ÷ NC_000913 637740 637842 103 2 [1] [0] 2 [dsbG] [dsbG]
* * ÷ NC_000913 641252 641540 289 2 [1] [1] 3 [ahpF]–[uspG] [ahpF],[uspG]
* * ÷ NC_000913 646755 646798 44 2 [1] [1] 2 citG triphosphoribosyl‑dephospho‑CoA synthase
* * ÷ NC_000913 652016 652166 151 2 [1] [1] 2 citC/dpiB citrate lyase synthetase/sensor histidine kinase DpiB
* * ÷ NC_000913 682676 682779 104 2 [1] [1] 2 hscC chaperone protein HscC
* * ÷ NC_000913 704401 704629 229 2 [1] [1] 2 nagE N‑acetylglucosamine‑specific PTS enzyme IIABC component
* * ÷ NC_000913 706251 706507 257 2 [1] [1] 2 glnS glutamine‑‑tRNA ligase
* * ÷ NC_000913 708840 708995 156 2 [1] [1] 2 chiP chitooligosaccharide outer membrane channel
* * ÷ NC_000913 712065 712098 34 2 [1] [1] 2 ybfF esterase
* * ÷ NC_000913 718611 718662 52 2 [1] [1] 2 speF inducible ornithine decarboxylase
* * ÷ NC_000913 727934 728152 219 2 [1] [1] 2 kdpA K(+) transporting P‑type ATPase subunit KdpA
* * ÷ NC_000913 730563 730621 59 2 [1] [1] 2 rhsC rhs element protein RhsC
* * ÷ NC_000913 735723 735931 209 2 [1] [1] 2 ybfC uncharacterized protein YbfC
* * ÷ NC_000913 736395–736473 736481 9–87 3 [1] [1] 2 [ybfQ] [ybfQ]
* * ÷ NC_000913 767178 767386 209 2 [1] [1] 2 mngA 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II
* * ÷ NC_000913 771249 771368 120 2 [1] [0] 2 mngB/cydA alpha‑mannosidase/cytochrome bd‑I subunit 1
* * ÷ NC_000913 794451 794559 109 2 [1] [1] 3 modE DNA‑binding transcriptional dual regulator ModE
* * ÷ NC_000913 801557 801686 130 2 [1] [1] 3 ybhH putative isomerase YbhH
* * ÷ NC_000913 807133 807179 47 2 [1] [1] 2 ybhC outer membrane lipoprotein YbhC
* * ÷ NC_000913 821455 821479 25 2 [1] [1] 2 ybhM Bax1‑I family protein YbhM
* * ÷ NC_000913 838364 838456 93 2 [1] [1] 2 ybiI zinc finger domain‑containing protein YbiI
* * ÷ NC_000913 852698 852761 64 2 [1] [1] 2 [rybA] [rybA]
* * ÷ NC_000913 859647 859696 50 2 [1] [1] 2 ybiV sugar phosphatase YbiV
* * ÷ NC_000913 859978 860054 77 2 [1] [1] 2 [ybiV] [ybiV]
* * ÷ NC_000913 870449 870515 67 2 [1] [1] 2 gsiB glutathione ABC transporter periplasmic binding protein
* * ÷ NC_000913 872828 872893 66 2 [1] [1] 2 gsiD/pdeI glutathione ABC transporter membrane subunit GsiD/putative c‑di‑GMP phosphodiesterase PdeI
* * ÷ NC_000913 877503 877611 109 2 [1] [1] 2 rimO ribosomal protein S12 methylthiotransferase RimO
* * ÷ NC_000913 884238 884434 197 2 [1] [1] 2 mdfA multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter
* * ÷ NC_000913 886752 886821 70 2 [1] [1] 2 ybjJ inner membrane protein YbjJ
* * ÷ NC_000913 901389 901586 198 2 [1] [1] 2 [artM]–[artQ] [artM],[artQ]
* * ÷ NC_000913 909304 909334 31 2 [1] [1] 2 [poxB] [poxB]
* * ÷ NC_000913 920328 920429 102 2 [1] [1] 2 [macA]–[macB] [macA],[macB]
* * ÷ NC_000913 926103 926115 13 2 [1] [1] 2 serW/infA tRNA‑Ser/translation initiation factor IF‑1
* * ÷ NC_000913 930401 930474 74 2 [1] [1] 3 cydD glutathione/L‑cysteine ABC exporter subunit CydD
* * ÷ NC_000913 931269 931366 98 2 [1] [1] 2 trxB thioredoxin reductase
* * ÷ NC_000913 936182 936294 113 2 [1] [1] 2 ftsK cell division DNA translocase FtsK
* * ÷ NC_000913 945976 946117 142 2 [1] [1] 2 ycaD putative transporter YcaD
* * ÷ NC_000913 956478 956575 98 2 [1] [1] 2 ycaO ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NC_000913 959158 959223 66 2 [1] [1] 2 aroA 3‑phosphoshikimate 1‑carboxyvinyltransferase
* * ÷ NC_000913 975298 975338 41 2 [1] [1] 2 mukF chromosome partitioning protein MukF
* * ÷ NC_000913 997905 997943 39 2 [1] [1] 2 elfA putative laminin‑binding fimbrial subunit
* * ÷ NC_000913 998004 998086 83 2 [1] [1] 2 elfA putative laminin‑binding fimbrial subunit
* * ÷ NC_000913 1006928 1007100 173 2 [1] [1] 2 ycbX 6‑N‑hydroxylaminopurine resistance protein
* * ÷ NC_000913 1023552 1023564 13 2 [0] [1] 2 yccS putative transporter YccS
* * ÷ NC_000913 1029725 1029927 203 2 [1] [1] 2 rlmI 23S rRNA m(5)C1962 methyltransferase
* * ÷ NC_000913 1030712 1030896 185 2 [1] [1] 2 [yccA] [yccA]
* * ÷ NC_000913 1079620 1079734 115 2 [1] [1] 2 putP proline:Na(+) symporter
* * ÷ NC_000913 1081798 1081861 64 2 [1] [1] 3 putP/efeO proline:Na(+) symporter/ferrous iron transport system protein EfeO
* * ÷ NC_000913 1082943 1083135 193 2 [1] [1] 2 efeO ferrous iron transport system protein EfeO
* * ÷ NC_000913 1094058 1094155 98 2 [1] [1] 2 dgcT putative diguanylate cyclase DgcT
* * ÷ NC_000913 1097477–1097524 1097594–1097587 64–118 2 [1] [1] 2 [serX] [serX]
* * ÷ NC_000913 1105428 1105588 161 2 [1] [1] 2 ymdA uncharacterized protein YmdA
* * ÷ NC_000913 1120995 1121017 23 2 [0] [1] 2 bssS/dinI regulator of biofilm formation/DNA damage‑inducible protein I
* * ÷ NC_000913 1128965 1129274 310 2 [1] [1] 2 murJ lipid II flippase MurJ
* * ÷ NC_000913 1129642 1129814 173 2 [1] [1] 2 flgN flagellar biosynthesis protein FlgN
* * ÷ NC_000913 1130685 1130719 35 2 [1] [1] 2 flgA flagellar basal body P‑ring formation protein FlgA
* * ÷ NC_000913 1163261 1163458 198 2 [1] [1] 2 thiK thiamine kinase
* * ÷ NC_000913 1175777 1175815 39 2 [1] [1] 3 lolC lipoprotein release complex ‑ inner membrane subunit
* * ÷ NC_000913 1187665 1187759 95 2 [0] [1] 2 roxA 50S ribosomal protein L16‑arginine 3‑hydroxylase
* * ÷ NC_000913 1189516 1189667 152 2 [1] [1] 3 phoQ sensor histidine kinase PhoQ
* * ÷ NC_000913 1190701 1190765 65 2 [1] [1] 2 purB adenylosuccinate lyase
* * ÷ NC_000913 1211463 1211507 45 2 [1] [1] 2 mcrA/iraM Type IV methyl‑directed restriction enzyme EcoKMcrA/anti‑adaptor protein IraM
* * ÷ NC_000913 1222537 1222666 130 2 [1] [1] 3 [ymgD]–[ymgG] [ymgD],[ymgG]
* * ÷ NC_000913 1254641 1254858 218 3 [1] [1] 3 ycgV putative autotransporter adhesin YcgV
* * ÷ NC_000913 1267146 1267164 19 2 [1] [1] 2 ychQ SirB family protein YchQ
* * ÷ NC_000913 1279854 1279884 31 2 [1] [1] 2 [narG] [narG]
* * ÷ NC_000913 1281900 1282011 112 2 [1] [1] 2 narG nitrate reductase A subunit alpha
* * ÷ NC_000913 1282574 1282643 70 2 [1] [1] 2 narG nitrate reductase A subunit alpha
* * ÷ NC_000913 1287132 1287216 85 2 [1] [1] 2 rttR small RNA RttR
* * ÷ NC_000913 1290933 1291036 104 3 [1] [1] 2 rssB regulator of RpoS
* * ÷ NC_000913 1305782 1305862 81 2 [1] [1] 2 oppF murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF
* * ÷ NC_000913 1309525 1309620 96 2 [1] [1] 2 kch K(+) channel Kch
* * ÷ NC_000913 1311152 1311310 159 2 [1] [1] 2 tonB Ton complex subunit TonB
* * ÷ NC_000913 1318502 1318548 47 2 [1] [1] 2 trpC fused indole‑3‑glycerol phosphate synthase/phosphoribosylanthranilate isomerase
* * ÷ NC_000913 1342682 1342690 9 2 [1] [1] 2 yciH putative translation factor
* * ÷ NC_000913 1351131 1351278 148 3 [1] [1] 2 fabI/ycjD enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD
* * ÷ NC_000913 1367834 1367940 107 3 [1] [1] 2 [pspF] [pspF]
* * ÷ NC_000913 1404815 1404948 134 2 [1] [1] 2 abgR putative LysR‑type DNA‑binding transcriptional regulator AbgR
* * ÷ NC_000913 1406355 1406392 38 3 [1] [0] 2 smrA DNA endonuclease SmrA
* * ÷ NC_000913 1419513 1419576 64 2 [1] [1] 2 ydaG/racR uncharacterized protein YdaG/DNA‑binding transcriptional repressor RacR
* * ÷ NC_000913 1424781 1424796 16 2 [1] [1] 2 trkG K(+) transporter TrkG
* * ÷ NC_000913 1435568 1435605 38 2 [1] [1] 2 uspF universal stress protein F
* * ÷ NC_000913 1450678 1450762 85 2 [0] [1] 2 tynA copper‑containing amine oxidase
* * ÷ NC_000913 1481878 1482006 129 2 [1] [1] 2 ynbD phosphatase domain‑containing protein YnbD
* * ÷ NC_000913 1493653 1493736 84 2 [1] [1] 2 trg methyl‑accepting chemotaxis protein Trg
* * ÷ NC_000913 1493981 1494005 25 2 [1] [1] 2 trg methyl‑accepting chemotaxis protein Trg
* * ÷ NC_000913 1544299 1544405 107 3 [1] [1] 2 narU/yddK nitrate/nitrite transporter NarU/leucine‑rich repeat domain‑containing protein YddK
* * ÷ NC_000913 1556646 1556863 218 2 [1] [1] 2 osmC osmotically inducible peroxiredoxin OsmC
* * ÷ NC_000913 1568201 1568282 82 2 [1] [1] 2 digH divisome localized glycosyl hydrolase
* * ÷ NC_000913 1568462 1568561 100 2 [1] [1] 2 digH divisome localized glycosyl hydrolase
* * ÷ NC_000913 1579248 1579320 73 2 [1] [1] 2 yddA ABC transporter family protein YddA
* * ÷ NC_000913 1591130 1591426 297 2 [1] [1] 2 hipA serine/threonine‑protein kinase toxin HipA
* * ÷ NC_000913 1596652 1596731 80 2 [1] [1] 2 hipB/lsrK antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase
* * ÷ NC_000913 1619351 1619555 205 2 [1] [1] 2 [marR] [marR]
* * ÷ NC_000913 1652952 1653108 157 2 [1] [1] 2 rspB putative zinc‑binding dehydrogenase RspB
* * ÷ NC_000913 1671197 1671214 18 2 [1] [0] 2 ynfM/asr putative transporter YnfM/periplasmic chaperone Asr
* * ÷ NC_000913 1679845 1679933 89 2 [1] [1] 2 ydgI putative arginine:ornithine antiporter
* * ÷ NC_000913 1736385 1736533 149 2 [1] [1] 2 ydhP putative transporter YdhP
* * ÷ NC_000913 1743948 1744019 72 2 [1] [0] 2 mdtK multidrug efflux pump MdtK
* * ÷ NC_000913 1749603 1749730 128 2 [1] [1] 2 ydhU putative cytochrome YdhU
* * ÷ NC_000913 1785442 1785534 93 2 [0] [1] 2 ppsA phosphoenolpyruvate synthetase
* * ÷ NC_000913 1798053 1798208 156 2 [1] [1] 2 pheS phenylalanine‑‑tRNA ligase subunit alpha
* * ÷ NC_000913 1801864 1801913 50 2 [1] [0] 2 thrS threonine‑‑tRNA ligase
* * ÷ NC_000913 1811270 1811304 35 2 [1] [0] 2 tcyP cystine/sulfocysteine:cation symporter
* * ÷ NC_000913 1819081 1819116 36 2 [1] [1] 2 chbR ChbR
* * ÷ NC_000913 1825051 1825253 203 2 [1] [1] 2 [spy] [spy]
* * ÷ NC_000913 1834888 1835028 141 2 [1] [1] 2 ydjZ DedA family protein YdjZ
* * ÷ NC_000913 1863882 1863921 40 2 [0] [1] 2 yeaD putative aldose 1‑epimerase YeaD
* * ÷ NC_000913 1866128 1866215 88 2 [1] [1] 2 mipA MltA‑interacting protein
* * ÷ NC_000913 1871660 1871829 170 2 [1] [1] 2 cdgI putative c‑di‑GMP binding protein CdgI
* * ÷ NC_000913 1875457 1875507 51 2 [1] [1] 2 nimR DNA‑binding transcriptional repressor NimR
* * ÷ NC_000913 1885625 1885701 77 2 [1] [1] 2 yeaW carnitine monooxygenase subunit YeaW
* * ÷ NC_000913 1941053 1941100 48 2 [0] [1] 2 mepM peptidoglycan endopeptidase MepM
* * ÷ NC_000913 1953831 1953961 131 2 [1] [1] 2 cmoB tRNA U34 carboxymethyltransferase
* * ÷ NC_000913 1971958 1972129 172 2 [1] [1] 2 tar methyl‑accepting chemotaxis protein Tar
* * ÷ NC_000913 1972378 1972450 73 2 [1] [1] 2 tar methyl‑accepting chemotaxis protein Tar
* * ÷ NC_000913 1984183 1984199 17 2 [1] [1] 2 araG arabinose ABC transporter ATP binding subunit
* * ÷ NC_000913 1993480 1993555 76 2 [1] [1] 2 uvrC UvrABC excision nuclease subunit C
* * ÷ NC_000913 1999798 1999836 39 2 [0] [1] 2 tcyJ cystine ABC transporter periplasmic binding protein
* * ÷ NC_000913 2002906 2002974 69 2 [1] [1] 2 fliC flagellar filament structural protein
* * ÷ NC_000913 2013192 2013354 163 2 [1] [0] 2 [fliF] [fliF]
* * ÷ NC_000913 2013467 2013497 31 2 [0] [1] 2 fliF flagellar basal‑body MS‑ring and collar protein
* * ÷ NC_000913 2024428 2024552 125 3 [1] [1] 2 rcsA DNA‑binding transcriptional activator RcsA
* * ÷ NC_000913 2028262 2028325 64 2 [1] [1] 2 yodC protein YodC
* * ÷ NC_000913 2032266 2032386 121 2 [1] [1] 2 [dcm]–[yedJ] [dcm],[yedJ]
* * ÷ NC_000913 2034509 2034629 121 2 [1] [1] 2 rseX/hchA small regulatory RNA RseX/protein/nucleic acid deglycase 1
* * ÷ NC_000913 2049240 2049301 62 2 [1] [1] 2 yeeJ inverse autotransporter adhesin
* * ÷ NC_000913 2052226 2052266 41 2 [1] [1] 2 yeeJ/shiA inverse autotransporter adhesin/shikimate:H(+) symporter
* * ÷ NC_000913 2056151 2056211 61 2 [1] [1] 2 amn AMP nucleosidase
* * ÷ NC_000913 2057843 2057959 117 2 [1] [1] 2 yeeN/asnW putative transcriptional regulator YeeN/tRNA‑Asn
* * ÷ NC_000913 2085682 2085926 245 2 [1] [1] 2 [plaP] [plaP]
* * ÷ NC_000913 2100638 2100778 141 2 [1] [1] 2 gnd 6‑phosphogluconate dehydrogenase, decarboxylating
* * ÷ NC_000913 2105840 2105886 47 2 [1] [1] 2 wbbI beta‑1,6‑galactofuranosyltransferase WbbI
* * ÷ NC_000913 2107809 2107915 107 2 [1] [1] 2 glf UDP‑galactopyranose mutase
* * ÷ NC_000913 2110370 2110506 137 2 [1] [1] 2 rfbA glucose‑1‑phosphate thymidylyltransferase 1
* * ÷ NC_000913 2112984 2113247 264 2 [1] [1] 2 [rfbB] [rfbB]
* * ÷ NC_000913 2128471 2128534 64 2 [0] [1] 2 wcaF colanic acid biosynthesis acetyltransferase WcaF
* * ÷ NC_000913 2128846 2129003 158 2 [1] [0] 2 [wcaF]–[wcaE] [wcaF],[wcaE]
* * ÷ NC_000913 2140805 2140863 59 2 [0] [1] 2 asmA putative assembly protein AsmA
* * ÷ NC_000913 2143521 2143645 125 2 [1] [1] 2 dgcE putative diguanylate cyclase DgcE
* * ÷ NC_000913 2148646 2148695 50 2 [1] [1] 2 yegD HSP70 family protein YegD
* * ÷ NC_000913 2148909 2148982 74 2 [1] [1] 2 yegD HSP70 family protein YegD
* * ÷ NC_000913 2149686 2149701 16 2 [1] [1] 2 yegI putative serine/threonine‑protein kinase YegI
* * ÷ NC_000913 2150413 2150521 109 2 [1] [1] 3 yegI putative serine/threonine‑protein kinase YegI
* * ÷ NC_000913 2160743 2160813 71 2 [1] [1] 2 mdtC multidrug efflux pump RND permease subunit MdtC
* * ÷ NC_000913 2174616 2174649 34 2 [1] [1] 2 gatA galactitol‑specific PTS enzyme IIA component
* * ÷ NC_000913 2177958 2178143 186 2 [1] [1] 2 fbaB fructose‑bisphosphate aldolase class I
* * ÷ NC_000913 2178949 2179011 63 2 [1] [1] 2 yegT putative transporter YegT
* * ÷ NC_000913 2180149 2180221 73 2 [1] [1] 2 yegU putative ADP‑ribosylglycohydrolase YegU
* * ÷ NC_000913 2185650 2185777 128 2 [1] [1] 2 rcnR DNA‑binding transcriptional repressor RcnR
* * ÷ NC_000913 2190811 2190895 85 2 [1] [1] 2 yehB putative fimbrial usher protein YehB
* * ÷ NC_000913 2191884 2191929 46 2 [1] [1] 2 yehD putative fimbrial protein YehD
* * ÷ NC_000913 2213108 2213153 46 2 [1] [0] 3 btsS high‑affinity pyruvate receptor
* * ÷ NC_000913 2213607 2214084 478 3 [1] [1] 2 btsS high‑affinity pyruvate receptor
* * ÷ NC_000913 2219342 2219510 169 2 [1] [1] 3 [osmF] [osmF]
* * ÷ NC_000913 2240456 2240624 169 4 [1] [1] 2 mglB/galS D‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein/DNA‑binding transcriptional dual regulator GalS
* * ÷ NC_000913 2240756 2240824 69 2 [1] [1] 2 galS DNA‑binding transcriptional dual regulator GalS
* * ÷ NC_000913 2241178 2241303 126 2 [1] [1] 2 galS DNA‑binding transcriptional dual regulator GalS
* * ÷ NC_000913 2250151 2250279 129 2 [1] [1] 2 yeiH PF03601 family inner membrane protein YeiH
* * ÷ NC_000913 2258405 2258499 95 2 [1] [1] 2 psuK putative pseudouridine kinase
* * ÷ NC_000913 2299223 2299248 26 2 [1] [1] 2 napH ferredoxin‑type protein NapH
* * ÷ NC_000913 2329717 2329850 134 2 [1] [0] 2 [yfaQ] [yfaQ]
* * ÷ NC_000913 2346932 2347002 71 2 [1] [1] 2 nrdA ribonucleoside‑diphosphate reductase 1 subunit alpha
* * ÷ NC_000913 2352913 2353032 120 2 [1] [1] 2 glpA anaerobic glycerol‑3‑phosphate dehydrogenase subunit A
* * ÷ NC_000913 2367623 2367746 124 2 [1] [1] 2 arnC undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase
* * ÷ NC_000913 2385947 2386053 107 2 [1] [1] 2 yfbL putative peptidase YfbL
* * ÷ NC_000913 2395328 2395433 106 2 [1] [1] 2 [nuoK]–[nuoJ] [nuoK],[nuoJ]
* * ÷ NC_000913 2406184 2406394 211 2 [1] [1] 2 lrhA DNA‑binding transcriptional dual regulator LrhA
* * ÷ NC_000913 2407129 2407185 57 2 [1] [1] 2 lrhA/alaA DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA
* * ÷ NC_000913 2438880 2439013 134 2 [1] [1] 2 [flk]–[yfcJ] [flk],[yfcJ]
* * ÷ NC_000913 2456983 2457054 72 2 [1] [1] 2 [fadJ] [fadJ]
* * ÷ NC_000913 2462615 2462664 50 2 [1] [1] 2 [fadL] [fadL]
* * ÷ NC_000913 2470410 2470568 159 2 [1] [1] 2 [yfdI]–[yodE] [yfdI],[yodE]
* * ÷ NC_000913 2471318 2471393 76 2 [1] [1] 2 yfdK putative tail fiber assembly protein YfdK
* * ÷ NC_000913 2474312 2474362 51 3 [1] [1] 3 yfdQ DUF2303 domain‑containing protein YfdQ
* * ÷ NC_000913 2480362 2480458 97 2 [1] [1] 2 dsdA D‑serine ammonia‑lyase
* * ÷ NC_000913 2488609 2488644 36 2 [0] [1] 2 yfdE acetyl‑CoA:oxalate CoA‑transferase
* * ÷ NC_000913 2496587 2496648 62 2 [1] [1] 2 lpxP/ypdK palmitoleoyl acyltransferase/putative membrane protein YpdK
* * ÷ NC_000913 2531075 2531289 215 2 [1] [1] 2 [zipA] [zipA]
* * ÷ NC_000913 2559905 2559937 33 2 [1] [1] 2 intZ putative phage integrase IntZ
* * ÷ NC_000913 2568314 2568409 96 2 [1] [1] 2 [eutG] [eutG]
* * ÷ NC_000913 2583151 2583285 135 2 [1] [1] 2 nudK GDP‑mannose hydrolase
* * ÷ NC_000913 2591679 2591774 96 2 [1] [1] 3 dapE succinyl‑diaminopimelate desuccinylase
* * ÷ NC_000913 2599777 2599789 13 2 [1] [1] 2 dapA/gcvR 4‑hydroxy‑tetrahydrodipicolinate synthase/putative transcriptional regulator GcvR
* * ÷ NC_000913 2599852 2599884 33 2 [0] [1] 2 dapA/gcvR 4‑hydroxy‑tetrahydrodipicolinate synthase/putative transcriptional regulator GcvR
* * ÷ NC_000913 2606987 2607081 95 2 [1] [1] 2 hyfF hydrogenase 4 component F
* * ÷ NC_000913 2626351 2626547 197 2 [1] [0] 2 ppx exopolyphosphatase
* * ÷ NC_000913 2631949 2632025 77 2 [1] [1] 3 guaA GMP synthetase
* * ÷ NC_000913 2634374 2634395 22 2 [1] [1] 2 xseA exodeoxyribonuclease VII subunit XseA
* * ÷ NC_000913 2639547 2639563 17 2 [1] [1] 2 hisS histidine‑‑tRNA ligase
* * ÷ NC_000913 2642954 2642968 15 2 [1] [0] 2 rodZ/rlmN cytoskeleton protein RodZ/23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase
* * ÷ NC_000913 2668279 2668323 45 2 [1] [1] 2 hcaR DNA‑binding transcriptional dual regulator HcaR
* * ÷ NC_000913 2688655 2688666 12 2 [0] [1] 2 glrR DNA‑binding transcriptional activator GlrR
* * ÷ NC_000913 2702691 2702805 115 2 [1] [1] 2 era 30S ribosomal subunit maturation GTPase Era
* * ÷ NC_000913 2714985 2715029 45 2 [1] [1] 2 yfiE putative LysR‑type DNA‑binding transcriptional regulator YfiE
* * ÷ NC_000913 2752390 2752427 38 2 [1] [1] 2 recN DNA repair protein RecN
* * ÷ NC_000913 2755980 2755987 8 2 [1] [0] 2 ssrA/intA tmRNA/integrase IntA
* * ÷ NC_000913 2756097 2756146 50 2 [0] [1] 2 ssrA/intA tmRNA/integrase IntA
* * ÷ NC_000913 2779223 2779307 85 2 [1] [1] 2 ypjA adhesin‑like autotransporter YpjA
* * ÷ NC_000913 2784296 2784331 36 2 [1] [1] 2 ypjB DUF5508 domain‑containing protein YpjB
* * ÷ NC_000913 2786529 2786706 178 3 [1] [1] 2 ileY/glaH tRNA‑Ile/glutarate dioxygenase GlaH
* * ÷ NC_000913 2798711 2798848 138 2 [1] [1] 2 stpA/alaE DNA‑binding transcriptional repressor StpA with RNA chaperone activity/L‑alanine exporter
* * ÷ NC_000913 2808917 2809003 87 2 [1] [1] 2 proX/ygaZ glycine betaine ABC transporter periplasmic binding protein ProX/L‑valine exporter, YgaZ component
* * ÷ NC_000913 2809720 2809803 84 2 [1] [1] 2 ygaZ L‑valine exporter, YgaZ component
* * ÷ NC_000913 2823867 2823868 2 2 [1] [0] 2 pncC NMN aminohydrolase
* * ÷ NC_000913 2839327 2839414 88 2 [1] [1] 2 ascG/ascF DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
* * ÷ NC_000913 2850839 2850869 31 2 [1] [0] 2 hypA hydrogenase 3 nickel incorporation protein HypA
* * ÷ NC_000913 2873880 2874033 154 2 [1] [1] 2 [cysC]–[cysN] [cysC],[cysN]
* * ÷ NC_000913 2900721 2900836 116 2 [1] [1] 2 yqcE putative transport protein YqcE
* * ÷ NC_000913 2903686 2903968 283 2 [1] [1] 2 ygcE/queE putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NC_000913 2907205 2907522 318 2 [1] [1] 2 eno enolase
* * ÷ NC_000913 2909358 2909486 129 2 [1] [1] 2 pyrG CTP synthetase
* * ÷ NC_000913 2947897 2948022 126 2 [1] [1] 2 amiC N‑acetylmuramoyl‑L‑alanine amidase C
* * ÷ NC_000913 2960293 2960365 73 3 [1] [1] 2 recC exodeoxyribonuclease V subunit RecC
* * ÷ NC_000913 2963172 2963377 206 2 [1] [1] 2 ppdB prepilin‑type N‑terminal cleavage/methylation domain‑containing protein PpdB
* * ÷ NC_000913 2965568 2965665 98 2 [1] [0] 2 lgt phosphatidylglycerol‑‑prolipoprotein diacylglyceryl transferase
* * ÷ NC_000913 2982861 2983066 206 2 [0] [1] 2 kduD putative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase
* * ÷ NC_000913 2985371 2985452 82 2 [1] [1] 2 yqeF putative acyltransferase
* * ÷ NC_000913 2995025 2995126 102 2 [1] [1] 2 ygeI/insD4 protein YgeI/IS2 insertion element protein InsB
* * ÷ NC_000913 3012738 3012884 147 2 [1] [1] 2 yqeB XdhC‑CoxI family protein YqeB
* * ÷ NC_000913 3017303 3017560 258 2 [1] [1] 2 ygfK putative oxidoreductase, Fe‑S subunit
* * ÷ NC_000913 3019878 3019907 30 3 [1] [1] 2 ssnA putative aminohydrolase SsnA
* * ÷ NC_000913 3030525 3030584 60 2 [1] [1] 2 ygfT putative oxidoreductase YgfT
* * ÷ NC_000913 3039113 3039244 132 2 [1] [1] 3 xerD site‑specific recombinase
* * ÷ NC_000913 3040537 3040588 52 2 [1] [1] 3 ygfX protein YgfX
* * ÷ NC_000913 3045877 3046097 221 3 [1] [1] 2 [ygfF] [ygfF]
* * ÷ NC_000913 3054569 3054633 65 2 [1] [1] 3 pepP Xaa‑Pro aminopeptidase
* * ÷ NC_000913 3068631 3068632 2 2 [0] [1] 2 argO L‑arginine exporter
* * ÷ NC_000913 3090647 3090725 79 2 [1] [1] 2 endA DNA‑specific endonuclease I
* * ÷ NC_000913 3122383 3122529 147 2 [1] [1] 2 glcB malate synthase G
* * ÷ NC_000913 3126420 3126566 147 2 [1] [1] 2 [glcE]–[glcD] [glcE],[glcD]
* * ÷ NC_000913 3130072 3130098 27 2 [1] [1] 2 yghO putative DNA‑binding transcriptional regulator YghO
* * ÷ NC_000913 3158137 3158403 267 2 [1] [1] 2 yqhG DUF3828 domain‑containing protein YqhG
* * ÷ NC_000913 3162024 3162162 139 2 [1] [1] 2 ftsP cell division protein FtsP
* * ÷ NC_000913 3180623 3180885 263 2 [1] [1] 2 ygiC putative acid‑‑amine ligase YgiC
* * ÷ NC_000913 3184330 3184405 76 2 [0] [1] 2 ribB 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
* * ÷ NC_000913 3186290–3187426 3187606 181–1317 2 [1] [1] 2 [insC5]–[yqiG] [insC5],insD5,[yqiG]
* * ÷ NC_000913 3239507 3239690 184 2 [1] [1] 2 [alx] [alx]
* * ÷ NC_000913 3250706 3250887 182 2 [1] [1] 2 yqjF DoxX family protein
* * ÷ NC_000913 3267322 3267402 81 2 [1] [1] 2 [tdcR] [tdcR]
* * ÷ NC_000913 3272472 3272653 182 2 [1] [1] 2 garR tartronate semialdehyde reductase
* * ÷ NC_000913 3276477 3276514 38 3 [1] [1] 2 garD GarD
* * ÷ NC_000913 3279006 3279072 67 2 [1] [1] 3 kbaZ putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone
* * ÷ NC_000913 3283560 3283660 101 2 [1] [1] 2 kbaY tagatose‑1,6‑bisphosphate aldolase 1
* * ÷ NC_000913 3284446 3284513 68 2 [1] [1] 3 agaB galactosamine‑specific PTS enzyme IIB component
* * ÷ NC_000913 3296468 3296501 34 2 [0] [1] 2 dolP division and outer membrane stress‑associated lipid‑binding lipoprotein
* * ÷ NC_000913 3306248 3306287 40 2 [1] [1] 2 deaD ATP‑dependent RNA helicase DeaD
* * ÷ NC_000913 3323334 3323416 83 2 [1] [1] 2 glmM phosphoglucosamine mutase
* * ÷ NC_000913 3344530 3344644 115 2 [1] [1] 2 lptB lipopolysaccharide transport system ATP binding protein LptB
* * ÷ NC_000913 3357667 3357682 16 2 [0] [1] 2 gltB glutamate synthase subunit GltB
* * ÷ NC_000913 3358020 3358225 206 2 [1] [1] 2 gltB glutamate synthase subunit GltB
* * ÷ NC_000913 3363204 3363242 39 2 [1] [1] 2 yhcD putative fimbrial usher protein YhcD
* * ÷ NC_000913 3378261 3378359 99 2 [1] [1] 2 rplM 50S ribosomal subunit protein L13
* * ÷ NC_000913 3383085 3383141 57 3 [1] [1] 2 degS serine endoprotease
* * ÷ NC_000913 3400948 3401130 183 2 [1] [1] 2 [mreB] [mreB]
* * ÷ NC_000913 3404176 3404217 42 2 [1] [1] 2 yhdH acrylyl‑CoA reductase
* * ÷ NC_000913 3406389 3406477 89 2 [1] [0] 2 accC biotin carboxylase
* * ÷ NC_000913 3414483 3414545 63 2 [1] [1] 3 acrE multidrug efflux pump membrane fusion lipoprotein AcrE
* * ÷ NC_000913 3423841–3424227 3424480–3424239 13–640 2 [1] [1] 2 [rrlD] [rrlD]
* * ÷ NC_000913 3440826 3440934 109 2 [1] [1] 2 rpoA RNA polymerase subunit alpha
* * ÷ NC_000913 3443193 3443244 52 2 [1] [1] 2 secY Sec translocon subunit SecY
* * ÷ NC_000913 3444414 3444462 49 2 [1] [1] 2 rplO 50S ribosomal subunit protein L15
* * ÷ NC_000913 3464771 3464836 66 2 [1] [1] 2 gspL Type II secretion system protein GspL
* * ÷ NC_000913 3471322 3471370 49 2 [1] [1] 2 [tufA] [tufA]
* * ÷ NC_000913 3479475 3479541 67 2 [1] [1] 2 kefB K(+) : H(+) antiporter KefB
* * ÷ NC_000913 3484439 3484496 58 2 [1] [1] 2 [prkB] [prkB]
* * ÷ NC_000913 3498137 3498245 109 2 [1] [1] 2 cysG siroheme synthase
* * ÷ NC_000913 3512969 3513030 62 2 [1] [1] 2 trpS tryptophan‑‑tRNA ligase
* * ÷ NC_000913 3514548 3514668 121 2 [1] [1] 2 rpe ribulose‑phosphate 3‑epimerase
* * ÷ NC_000913 3516719 3516886 168 3 [1] [1] 3 damX cell division protein DamX
* * ÷ NC_000913 3543192 3543278 87 2 [0] [1] 2 rpnA recombination‑promoting nuclease RpnA
* * ÷ NC_000913 3549559 3549788 230 2 [1] [1] 2 malQ 4‑alpha‑glucanotransferase
* * ÷ NC_000913 3582021 3582224 204 2 [1] [1] 2 yhhZ putative endonuclease YhhZ
* * ÷ NC_000913 3588978 3589054 77 3 [1] [1] 2 ugpC sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit
* * ÷ NC_000913 3594854 3595134 281 2 [1] [1] 2 livM branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM
* * ÷ NC_000913 3602539 3602558 20 2 [1] [1] 2 ftsE cell division protein FtsE
* * ÷ NC_000913 3606282 3606305 24 2 [1] [1] 2 yhhN PF07947 family protein YhhN
* * ÷ NC_000913 3606797 3606864 68 2 [0] [1] 2 zntA Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase
* * ÷ NC_000913 3608641 3608745 105 2 [1] [1] 3 [zntA] [zntA]
* * ÷ NC_000913 3609522 3609561 40 2 [1] [1] 2 yhhQ queuosine precursor transporter
* * ÷ NC_000913 3637970 3638198 229 2 [1] [1] 2 pitA metal phosphate:H(+) symporter PitA
* * ÷ NC_000913 3648312 3648374 63 2 [1] [1] 2 agrB small regulatory RNA AgrB
* * ÷ NC_000913 3672197 3672326 130 2 [1] [1] 2 yhjB/rcdB putative DNA‑binding transcriptional regulator YhjB/putative DNA‑binding transcriptional regulator YhjC
* * ÷ NC_000913 3705262 3705299 38 2 [1] [1] 2 dppB dipeptide ABC transporter membrane subunit DppB
* * ÷ NC_000913 3707240 3707338 99 2 [1] [1] 2 dppA dipeptide ABC transporter periplasmic binding protein
* * ÷ NC_000913 3709456 3709540 85 2 [1] [1] 2 eptB phosphoethanolamine transferase EptB
* * ÷ NC_000913 3715177 3715253 77 2 [1] [1] 2 bisC biotin sulfoxide reductase
* * ÷ NC_000913 3726318 3726497 180 2 [1] [0] 2 wecH O‑acetyltransferase WecH
* * ÷ NC_000913 3735480 3735495 16 2 [0] [1] 2 xylR DNA‑binding transcriptional dual regulator XylR
* * ÷ NC_000913 3737342 3737387 46 2 [0] [1] 2 baxL/malS putative translational regulatory protein BaxL/alpha‑amylase
* * ÷ NC_000913 3737684 3737738 55 2 [1] [1] 3 malS alpha‑amylase
* * ÷ NC_000913 3740691 3740831 141 2 [1] [1] 2 avtA valine‑‑pyruvate aminotransferase
* * ÷ NC_000913 3743721 3743883 163 2 [1] [1] 2 [yiaK]–[yiaL] [yiaK],[yiaL]
* * ÷ NC_000913 3748245 3748304 60 2 [1] [1] 2 lyxK L‑xylulose kinase
* * ÷ NC_000913 3769770 3769818 49 2 [1] [1] 2 yibV/yibH PF15596 family protein YibV/inner membrane protein YibH
* * ÷ NC_000913 3774079 3774141 63 2 [1] [1] 2 mtlA mannitol‑specific PTS enzyme IICBA component
* * ÷ NC_000913 3785245 3785286 42 2 [0] [1] 2 [gpmM] [gpmM]
* * ÷ NC_000913 3787822 3787920 99 2 [1] [1] 2 envC murein hydrolase activator EnvC
* * ÷ NC_000913 3789480 3789573 94 2 [1] [1] 2 waaH UDP‑glucuronate:LPS(HepIII) glycosyltransferase
* * ÷ NC_000913 3798836 3798914 79 2 [0] [1] 2 waaU putative ADP‑heptose:LPS heptosyltransferase 4
* * ÷ NC_000913 3799582 3799644 63 2 [1] [1] 2 waaZ lipopolysaccharide core biosynthesis protein WaaZ
* * ÷ NC_000913 3824113 3824197 85 2 [1] [1] 3 spoT bifunctional (p)ppGpp synthase/hydrolase SpoT
* * ÷ NC_000913 3845174 3845346 173 2 [1] [1] 3 adeD adenine deaminase
* * ÷ NC_000913 3845680 3845871 192 2 [1] [1] 2 [adeD]–[uhpT] [adeD],[uhpU],[uhpT]
* * ÷ NC_000913 3847400 3847599 200 2 [1] [1] 3 uhpC inner membrane protein sensing glucose‑6‑phosphate
* * ÷ NC_000913 3850458 3850459 2 2 [0] [1] 2 uhpA DNA‑binding transcriptional activator UhpA
* * ÷ NC_000913 3855837 3855996 160 2 [1] [1] 3 [yidG]–[yidH] [yidG],[yidH]
* * ÷ NC_000913 3873852 3873915 64 2 [1] [1] 2 dgoK 2‑dehydro‑3‑deoxygalactonokinase
* * ÷ NC_000913 3876808 3876884 77 2 [1] [1] 2 yidA sugar phosphatase YidA
* * ÷ NC_000913 3883304 3883511 208 2 [0] [1] 2 dnaA chromosomal replication initiator protein DnaA
* * ÷ NC_000913 3887939 3888086 148 2 [1] [1] 2 mnmE 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit
* * ÷ NC_000913 3908524 3908614 91 2 [0] [1] 2 [pstA] [pstA]
* * ÷ NC_000913 3911802 3911841 40 2 [1] [1] 2 [glmS] [glmS]
* * ÷ NC_000913 3915578 3915683 106 2 [1] [1] 2 atpC ATP synthase F1 complex subunit epsilon
* * ÷ NC_000913 3922645 3922717 73 2 [1] [1] 2 atpI/rsmG ATP synthase accessory factor AtpI/16S rRNA m(7)G527 methyltransferase
* * ÷ NC_000913 3924200 3924372 173 2 [1] [1] 2 mnmG 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
* * ÷ NC_000913 3925390 3925475 86 2 [1] [1] 2 mnmG 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
* * ÷ NC_000913 3930640 3930931 292 2 [1] [1] 2 ravA regulatory ATPase RavA
* * ÷ NC_000913 3941483 3941543–3941525 43–61 2 [1] [1] 2 yieP/rrsC DNA‑binding transcriptional regulator YieP/16S ribosomal RNA
* * ÷ NC_000913 3951077 3951116 40 2 [1] [1] 2 ilvX/ilvM uncharacterized protein IlvX/acetolactate synthase II subunit IlvM
* * ÷ NC_000913 3966620 3966683 64 3 [1] [1] 2 rho transcription termination factor Rho
* * ÷ NC_000913 3968156 3968398 243 2 [1] [1] 2 rfe UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
* * ÷ NC_000913 3987756 3987903 148 2 [1] [1] 3 [hemY]–[hemX] [hemY],[hemX]
* * ÷ NC_000913 4005282 4005381 100 2 [1] [1] 2 pldA outer membrane phospholipase A
* * ÷ NC_000913 4011689 4011762 74 2 [1] [1] 2 bioP biotin transporter
* * ÷ NC_000913 4023077 4023167 91 2 [1] [1] 2 tatC twin arginine protein translocation system ‑ TatC protein
* * ÷ NC_000913 4028555 4028642 88 2 [1] [1] 2 fadA 3‑ketoacyl‑CoA thiolase
* * ÷ NC_000913 4042805 4042887 83 2 [1] [1] 2 srkA stress response kinase A
* * ÷ NC_000913 4045312 4045458 147 2 [1] [1] 2 yihF DUF945 domain‑containing protein YihF
* * ÷ NC_000913 4070377 4070540 164 2 [1] [1] 2 [yihR]–[yihS] [yihR],[yihS]
* * ÷ NC_000913 4086706 4086810 105 2 [1] [1] 2 fdhD sulfurtransferase for molybdenum cofactor sulfuration
* * ÷ NC_000913 4088157 4088198 42 2 [1] [1] 2 frvR putative DNA‑binding transcriptional regulator FrvR
* * ÷ NC_000913 4104161 4104205 45 2 [0] [1] 2 cpxA sensor histidine kinase CpxA
* * ÷ NC_000913 4106958 4107051 94 2 [1] [1] 2 fieF Zn(2(+))/Fe(2(+))/Cd(2(+)) exporter
* * ÷ NC_000913 4109309 4109416 108 2 [1] [1] 2 sbp sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp
* * ÷ NC_000913 4134997 4135151 155 2 [1] [1] 2 katG catalase/hydroperoxidase HPI
* * ÷ NC_000913 4137246 4137513 268 2 [1] [1] 2 yijF DUF1287 domain‑containing protein YijF
* * ÷ NC_000913 4141364 4141461 98 2 [1] [1] 2 ptsA putative PTS multiphosphoryl transfer protein PtsA
* * ÷ NC_000913 4150458 4150490 33 2 [1] [0] 2 ppc phosphoenolpyruvate carboxylase
* * ÷ NC_000913 4180958 4181030 73 2 [1] [1] 2 rplL/rpoB 50S ribosomal subunit protein L12/RNA polymerase subunit beta
* * ÷ NC_000913 4187640 4187675 36 2 [1] [1] 2 rpoC RNA polymerase subunit beta'
* * ÷ NC_000913 4193091 4193150 60 2 [1] [1] 2 thiF sulfur carrier protein ThiS adenylyltransferase
* * ÷ NC_000913 4205369 4205424 56 2 [1] [1] 2 purD phosphoribosylamine‑‑glycine ligase
* * ÷ NC_000913 4221437 4221465 29 2 [1] [1] 4 arpA regulator of acetyl CoA synthetase
* * ÷ NC_000913 4264270 4264356 87 2 [1] [1] 2 [dnaB] [dnaB]
* * ÷ NC_000913 4264633 4264740 108 2 [1] [1] 2 dnaB replicative DNA helicase
* * ÷ NC_000913 4265971 4266044 74 2 [1] [1] 2 alr alanine racemase 1
* * ÷ NC_000913 4275940 4276059 120 2 [1] [1] 2 pdeC c‑di‑GMP phosphodiesterase PdeC
* * ÷ NC_000913 4284293 4284303 11 2 [1] [1] 2 actP acetate/glycolate:cation symporter
* * ÷ NC_000913 4310854 4310900 47 2 [1] [1] 2 alsA D‑allose ABC transporter ATP binding subunit
* * ÷ NC_000913 4314229 4314442 214 2 [1] [1] 3 [phnP] [phnP]
* * ÷ NC_000913 4319199 4319470 272 2 [1] [1] 2 phnJ carbon‑phosphorus lyase core complex subunit PhnJ
* * ÷ NC_000913 4321659 4321759 101 2 [1] [1] 2 [phnG]–[phnF] [phnG],[phnF]
* * ÷ NC_000913 4324989 4325063 75 3 [1] [1] 2 phnC phosphonate/phosphate ABC transporter ATP binding subunit
* * ÷ NC_000913 4336743 4336799 57 2 [1] [1] 2 adiC arginine:agmatine antiporter
* * ÷ NC_000913 4366540 4366675 136 2 [1] [1] 2 dcuA C4‑dicarboxylate transporter DcuA
* * ÷ NC_000913 4413790 4413850 61 2 [1] [1] 2 yjfC putative acid‑‑amine ligase YjfC
* * ÷ NC_000913 4415898 4415981 84 2 [1] [1] 2 [aidB] [aidB]
* * ÷ NC_000913 4427287 4427388 102 2 [1] [1] 3 yjfZ DUF2686 domain‑containing protein YjfZ
* * ÷ NC_000913 4470241 4470324 84 2 [1] [1] 2 [mgtA] [mgtA]
* * ÷ NC_000913 4472138 4472255 118 2 [1] [1] 2 pyrB aspartate carbamoyltransferase catalytic subunit
* * ÷ NC_000913 4476983 4477133 151 2 [1] [1] 2 yjgL protein YjgL
* * ÷ NC_000913 4477410 4477548 139 2 [1] [1] 2 argI ornithine carbamoyltransferase ArgI
* * ÷ NC_000913 4479297 4479448 152 2 [1] [1] 3 yjgM putative N‑acetyltransferase YjgM
* * ÷ NC_000913 4485404 4485452 49 3 [1] [1] 2 pepA aminopeptidase A/I
* * ÷ NC_000913 4495065 4495114 50 2 [1] [1] 2 idnK D‑gluconate kinase, thermosensitive
* * ÷ NC_000913 4500815 4500858 44 2 [0] [1] 2 insD6/yjgZ IS2 insertion element protein InsB/uncharacterized protein YjgZ
* * ÷ NC_000913 4510647 4510803 157 2 [1] [1] 2 [fecE] [fecE]
* * ÷ NC_000913 4514281 4514312 32 2 [1] [1] 2 [fecB] [fecB]
* * ÷ NC_000913 4521253 4521394 142 2 [1] [1] 2 yjhF putative transporter YjhF
* * ÷ NC_000913 4521659 4521706 48 2 [1] [1] 2 yjhF putative transporter YjhF
* * ÷ NC_000913 4536273 4536345 73 2 [1] [1] 2 topAI/ythB toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB
* * ÷ NC_000913 4541800 4541917 118 2 [1] [1] 2 fimB/fimE Type 1 fimbriae regulatory protein FimB/regulator for fimA
* * ÷ NC_000913 4549813 4549891 79 2 [1] [1] 2 fimH/gntP type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter
* * ÷ NC_000913 4550399 4550548 150 2 [1] [1] 2 gntP fructuronate transporter
* * ÷ NC_000913 4550884 4551020 137 2 [1] [1] 2 gntP fructuronate transporter
* * ÷ NC_000913 4560480 4560560 81 2 [0] [1] 2 yjiH uncharacterized protein YjiH
* * ÷ NC_000913 4563282 4563427 146 2 [1] [1] 2 yjiK PF06977 family protein YjiK
* * ÷ NC_000913 4578971 4579053 83 2 [1] [1] 2 mcrB 5‑methylcytosine‑specific restriction enzyme subunit McrB
* * ÷ NC_000913 4580552 4580631 80 3 [1] [1] 2 hsdS type I restriction enzyme EcoKI specificity subunit
* * ÷ NC_000913 4580924 4581010 87 2 [1] [1] 2 hsdS type I restriction enzyme EcoKI specificity subunit
* * ÷ NC_000913 4590593 4590683 91 2 [1] [1] 2 btsT pyruvate:H(+) symporter
* * ÷ NC_000913 4593255 4593370 116 2 [1] [1] 2 [tsr]–[lgoT] [tsr],[lgoT]
* * ÷ NC_000913 4616493 4616569 77 2 [1] [1] 3 yjjI DUF3029 domain‑containing protein YjjI
* * ÷ NC_000913 4628458 4628521 64 2 [1] [1] 2 nadR DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 70062 =8 (1.250)5 (0.910)
+22 bp		 5/274 0.1 47.2% intergenic (‑14/‑325) araB/araC ribulokinase/DNA‑binding transcriptional dual regulator AraC
?NC_000913 = 367520 5 (0.780)intergenic (‑10/+67) lacI/mhpR DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR