mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 581,301 | 0 | C | T | 76.0% | 21.5 / 11.8 | 26 | I156I (ATC→ATT) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,286 | 0 | G | C | 74.1% | 34.6 / 17.2 | 27 | L151L (CTG→CTC) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,290 | 0 | C | A | 73.1% | 19.7 / 10.6 | 26 | R153R (CGG→AGG) ‡ | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,291 | 0 | G | A | 73.1% | 17.5 / 11.2 | 26 | R153Q (CGG→CAG) ‡ | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,518 | 0 | C | G | 72.7% | 27.2 / 14.7 | 22 | intergenic (+139/‑16) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| * | NC_000913 | 581,289 | 0 | A | G | 70.4% | 22.5 / 12.1 | 27 | K152K (AAA→AAG) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,524 | 0 | G | A | 70.0% | 17.5 / 11.8 | 20 | intergenic (+145/‑10) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| * | NC_000913 | 581,527 | 0 | G | C | 70.0% | 18.5 / 13.0 | 20 | intergenic (+148/‑7) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| * | NC_000913 | 581,530 | 0 | C | G | 70.0% | 17.6 / 12.8 | 20 | intergenic (+151/‑4) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| * | NC_000913 | 1,951,203 | 0 | A | T | 68.4% | 16.7 / 10.4 | 19 | I124I (ATA→ATT) | yecD | isochorismatase family protein YecD |
| * | NC_000913 | 581,223 | 0 | C | T | 66.7% | 7.4 / 10.1 | 18 | D130D (GAC→GAT) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,226 | 0 | G | A | 66.7% | 7.8 / 10.7 | 18 | G131G (GGG→GGA) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,227 | 0 | A | G | 66.7% | 10.2 / 10.5 | 18 | I132V (ATC→GTC) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,548 | 0 | C | T | 46.7% | ‑2.3 / 11.8 | 15 | G5G (GGC→GGT) | tfaD | putative tail fiber assembly protein TfaD |
| * | NC_000913 | 581,569 | 0 | G | C | 43.8% | 2.9 / 19.3 | 16 | V12V (GTG→GTC) | tfaD | putative tail fiber assembly protein TfaD |
| * | NC_000913 | 581,572 | 0 | T | C | 43.8% | ‑0.7 / 13.3 | 16 | N13N (AAT→AAC) | tfaD | putative tail fiber assembly protein TfaD |
| * | NC_000913 | 367,215 | 0 | A | G | 41.2% | ‑2.8 / 15.4 | 18 | V99A (GTA→GCA) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NC_000913 | 581,560 | 0 | C | A | 40.0% | 1.2 / 10.7 | 16 | I9I (ATC→ATA) | tfaD | putative tail fiber assembly protein TfaD |
| * | NC_000913 | 71,082 | 0 | T | C | 35.0% | 10.7 / 12.4 | 20 | I232I (ATT→ATC) | araC | DNA‑binding transcriptional dual regulator AraC |
| * | NC_000913 | 71,085 | 0 | T | C | 35.0% | 10.6 / 11.3 | 20 | S233S (AGT→AGC) | araC | DNA‑binding transcriptional dual regulator AraC |