| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70062 = | 8 (1.250) | 5 (0.910) +GCTAGCAGGAGGAATTCACCAT |
5/274 | 0.1 | 47.2% | intergenic (‑14/‑325) | araB/araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 367520 | 5 (0.780) | intergenic (‑10/+67) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR | |||||
GCGCTGTTCGACGCTAAGCTCTGCAAGCACGGTTTTCAGTGCCGCTTCCATTGACTCAATGTAGTCACGCGGATGATGACGGAACTGGTTATTCGGGGCATCACAAAATTGCCCTTTCTGCCAACGGGGATACCACTCTACGCTGGTGGCGATCTCTTCACCGGTAGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGA > NC_000913/69818‑70260 | gcgcTGTTCGACGCTAAGCTCTGCAAGCACGGTTTTCAGTGCCGCTTCCATTGACTCAATGTAGTCACGCGGATGATGACGGAACTGGTTATTCGGGGCATCACAAAATTGCCCTTTCTGCCAACGGGGATACCACTCTACGCTGGTGGCGATCTCTTCACCGGTAGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaa > 1:48337/1‑250 (MQ=255) cGGTTTTCAGTGCCGCTTCCATTGACTCAATGTAGTCACGCGGATGATGACTGAACTGGTTATTCGGGGCATCACAAAATTGCCCTTTCTGCCAACGGGGATACCACTCTACGCTGGTGGCGATCTCTTCACCGGTCGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAGCGGGTATGGATAAACAGTAGAGAGTTg < 1:133842/251‑1 (MQ=255) gtgccacgcggttgggaatgtaattcagctccgccatcgccgcttccactttttcacgcgttttcgcagaaacgtggctggcctggttcaccacgcgggaaacggtctgataagagccaccggcatactctgcgacatcgtataacgttactggtttcacattcaccaccatggtgaattcctcctgctagcCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGt < 1:120763‑M1/34‑1 (MQ=255) aCTCAATGTAGTCACGCGGATGATGACGGAACTGGTTATTCGGGGCATCACAAAATTGCCCTTTCTGCCAACGGGGATACCACTCTGCGCTGGTGGCGATCTCTTCACCGGTAGCGCAGTTCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGTGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc < 1:83192/251‑1 (MQ=255) gaatgtaattcagctccgccatcgccgcttccactttttcccgcgttttcgcagaaacgtggctggcctggttcaccacgcgggaaacggtctgataagagacaccggcatactctgagacatcgtataacgttactggtttcacattcaccaccatggtgaattcctcctgctagcCCAAAAAAACGGGTATGGAGCAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg < 1:90567‑M1/74‑1 (MQ=255) gccatcgccgcttccactttttcccgcgttttcgcagaaacgtggctggcctggttcaccccgcgggaaacggtctgataagagacaccggcatactctgcgacatcgtataacgttactggtttcacattcaccaccatggtgaattcctcctgctagcCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGc < 1:24638‑M1/90‑1 (MQ=255) aTCACAAAATTGCCCTTTCTGCCAACTGGGATACCACTCTACGCTGGTGGCGATCTCTTCACCGGTAGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACTGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGTATCCGCTAATCTTATTGATAAAAATGCTATGGCATAGCAAAGTGTGACg < 1:111776/251‑1 (MQ=255) tggtggCGATCTCTTCACCGGTAGCTCAGTCCACCGCCAAAGCTCGCACAGAATCACTTCCAAAAGCGAGGCCAATGGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGTTATGGATAAACAGTAGAGATTTTCGATAAAAAGCGGCAGTTAGTATCCTCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGtgtg < 1:132319/204‑1 (MQ=255) cacgcgggaaacggtctgataagagacaccggcatactcggcgacatcgtataacgttgctggtttcacattcacccccatggtgaattcctcctgctagcCCAAAAAAACGGGGATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTa > 1:97182‑M1/102‑156 (MQ=255) gATCTCTTCACCGGTAGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTg > 1:3637/1‑251 (MQ=255) aGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCACAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAACAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTc > 1:79426/1‑251 (MQ=255) gcgcAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTACATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTc > 1:120092/1‑250 (MQ=255) ataacgttactggtttcacattcaccaccatggtgaattcctcctgctagcCCAAAAAAACGGGTATGTAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGTTTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTTATTATAGACTCTTTTGGTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGa > 1:77259‑M1/52‑250 (MQ=255) cCCAAAAAAACGGGTATGGAGAAACAGCAGAGCGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTAcg < 1:147499‑M1/162‑1 (MQ=255) | GCGCTGTTCGACGCTAAGCTCTGCAAGCACGGTTTTCAGTGCCGCTTCCATTGACTCAATGTAGTCACGCGGATGATGACGGAACTGGTTATTCGGGGCATCACAAAATTGCCCTTTCTGCCAACGGGGATACCACTCTACGCTGGTGGCGATCTCTTCACCGGTAGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTATGGCATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGA > NC_000913/69818‑70260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |