New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	70062 =	8 (1.250)	5 (0.910) +GCTAGCAGGAGGAATTCACCAT	5/274	0.1	47.2%	intergenic (‑14/‑325)	araB/araC	ribulokinase/DNA‑binding transcriptional dual regulator AraC
	?	NC_000913	= 367520	5 (0.780)					intergenic (‑10/+67)	lacI/mhpR	DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR

AACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTCCGGCCACCAGAATAGCCTGCGATTCAACCCCTTCTTCGATCTGTTTTGCTACCCGTTGTAGCGCCGGAAGATGCTTTTCCGCTGCCTGTTCAATGGTCATTGCGCTCGCCATATACACCAGATTCA  >  NC_000913/367326‑367741                                                                                                                                                                                                   |                                                                                                                                                                                                                              aaCGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGATACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGc                                                                                                                                                                                               >  1:94512/1‑227 (MQ=255)                       gttgtGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCTCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAatg                                                                                                                                                 <  1:30849/251‑1 (MQ=255)                          gtgCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCACGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGGAAACGGTCTGATAAGAGCCACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCatggtgaattcctcctgctagcccaaaaaaacgggtatggagaaacagtagagagt                                                                                                                                                                       <  1:120763‑M2/226‑57 (MQ=255)                                         gAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGAGACATCGTATAACGTTACTGGTTTCACATTCACCACCatggtgaattcctcctgctagcccaaaaaaacgggtatggagcaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatcttatgg                                                                                                                               <  1:90567‑M2/251‑97 (MQ=255)                                               aaTTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGACACGTGGCCGGCATGGTTCACCACGCGGGAAACGGTCTGATAAGAGACAACGGCATACTCTGCGACATCGTATCACGTTACTGGTTTCACATTCACCCCCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTgc                                                                                                                                                                           >  1:156095/1‑201 (MQ=255)                                                          gCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCCCGCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCatggtgaattcctcctgctagcccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatcttatggataaaaatgctatggc                                                                                                               <  1:24638‑M2/250‑113 (MQ=255)                                                                                                          gcCTGGTTCACCACGCGGGAAACGGTCTGATAAGAGACACCGGCATACTATGCGACATCGTATAACGTTCCTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTCCGGc                                                                                                                            >  1:152753/1‑189 (MQ=255)                                                                                                              ggTTCATCACGCGGGAAACGGTCTGATAAGAGACAACGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTCCGGCCACCAGAATAGCCTGCGATTCAACCCCTTCTTCGATCTGTTTTGCTACCCGTTGTAGCGCCgccgg                                                          >  1:136182/1‑247 (MQ=255)                                                                                                                     cacGCGGGAAACGGTCTGATAAGAGACACCGGCATACTCGGCGACATCGTATAACGTTGCTGGTTTCACATTCACCCCCatggtgaattcctcctgctagcccaaaaaaacggggatggagaaacagtagagagttgcgataaaaagcgtcaggta                                                                                                                                                  >  1:97182‑M2/1‑79 (MQ=255)                                                                                                                                                                       ataACGTTACTGGTTTCACATTCACCACCatggtgaattcctcctgctagcccaaaaaaacgggtatgtagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatcttatggataaaaatgctatggcatagcaaagtttgacgccgtgcaaataatcaatgtggacttttctgccgttattatagactcttttggtacgcgtttttgtcatggctttggtcccgctttgttacaga  >  1:77259‑M2/1‑29 (MQ=255)                                                                                                                                                                                                   |                                                                                                                                                                                                                              AACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTCCGGCCACCAGAATAGCCTGCGATTCAACCCCTTCTTCGATCTGTTTTGCTACCCGTTGTAGCGCCGGAAGATGCTTTTCCGCTGCCTGTTCAATGGTCATTGCGCTCGCCATATACACCAGATTCA  >  NC_000913/367326‑367741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.