mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| JC JC | 321,371 | IS1 (+) +9 bp | intergenic (+290/‑229) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 508,024 | G→T | Y19* (TAC→TAA) | ybaP ← | TraB family protein YbaP |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 812,078 | C→A | P186H (CCC→CAC) | bioC → | malonyl‑acyl carrier protein methyltransferase |
| RA | 830,658 | T→G | intergenic (‑15/‑214) | cecR ← / → rhlE | DNA‑binding transcriptional dual regulator CecR/ATP‑dependent RNA helicase RhlE |
| RA | 923,152 | Δ1 bp | coding (240/321 nt) | clpS → | specificity factor for ClpA‑ClpP chaperone‑protease complex |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| JC JC | 1,034,134 | IS30 (–) +2 bp | coding (881‑882/1794 nt) | hyaB → | hydrogenase 1 large subunit |
| JC JC | 1,034,134 | IS30 (+) +2 bp | coding (881‑882/1794 nt) | hyaB → | hydrogenase 1 large subunit |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,098,620 | T→A | V245V (GTT→GTA) | ghrA → | glyoxylate/hydroxypyruvate reductase A |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| JC JC | 1,293,091 | IS5 (+) +4 bp | intergenic (‑169/‑433) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,367,942 | C→A | intergenic (‑30/‑137) | pspF ← / → pspA | DNA‑binding transcriptional dual regulator PspF/phage shock protein A |
| RA | 1,519,013 | C→A | intergenic (‑167/‑14) | mnaT ← / → curA | L‑amino acid N‑acyltransferase/NADPH‑dependent curcumin/dihydrocurcumin reductase |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,754,308 | G→T | P57H (CCC→CAC) | ydhY ← | putative 4Fe‑4S ferredoxin‑like protein YdhY |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC JC | 2,174,662 | IS5 (–) +4 bp | coding (385‑388/453 nt) | gatA ← | galactitol‑specific PTS enzyme IIA component |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,439,937 | G→A | L62L (CTG→TTG) | yfcJ ← | putative transporter YfcJ |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,724,674 | C→A | G358V (GGA→GTA) | kgtP ← | alpha‑ketoglutarate:H(+) symporter |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| MC JC | 3,097,003 | Δ33,143 bp | IS5‑mediated | [rdgB]–[yghO] | 30 genes [rdgB], hemW, yggM, ansB, yggN, yggL, trmB, mutY, yggX, mltC, nupG, speC, yqgH, yqgA, pheV, yghD, yghE, yqhJ, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, [yghO] |
| RA | 3,261,367 | Δ1 bp | coding (1052/2295 nt) | tdcE ← | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| MC JC | 3,708,467 | Δ168 bp | [proK] | [proK] | |
| RA | 3,719,625 | G→T | D50Y (GAT→TAT) | yiaG → | putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| JC JC | 3,888,638 | IS1 (+) +9 bp | intergenic (+129/‑84) | tnaC → / → tnaA | tnaAB operon leader peptide/tryptophanase |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| MC JC | 4,123,824 | Δ8 bp | coding (626‑633/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| JC JC | 4,640,418 | IS30 (–) +2 bp | coding (17‑18/141 nt) | yjjY → | uncharacterized protein YjjY |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196266 | 1211472 | 15207 | 42 [38] | [37] 40 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 111 [0] | [0] 143 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423773–3424233 | 3424492–3424239 | 7–720 | 39 [38] | [36] 40 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 27235 = | 38 (0.360) | 70 (0.660) | 50/596 | 0.9 | 64.8% | intergenic (+8/‑58) | ispH/rihC | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/ribonucleoside hydrolase RihC |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 27236 | 38 (0.360) | 53 (0.500) | 39/598 | 1.7 | 58.2% | intergenic (+9/‑57) | ispH/rihC | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/ribonucleoside hydrolase RihC |
| ? | NC_000913 | 1469296 = | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 39 (0.370) | 35/598 | 2.1 | 20.1% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 332056 = | 155 (1.460) | intergenic (+180/‑315) | yahV/pdeL | protein YahV/DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL | |||||
| * | ? | NC_000913 | 270541 = | NA (NA) | 59 (0.560) | 48/594 | 1.0 | 52.2% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 419643 | 54 (0.510) | coding (53/1320 nt) | brnQ | branched chain amino acid transporter BrnQ | |||||
| * | ? | NC_000913 | 270541 = | NA (NA) | 47 (0.440) | 34/598 | 2.2 | 50.0% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 741740 | 47 (0.440) | coding (817/1482 nt) | dtpD | dipeptide:H(+) symporter DtpD | |||||
| * | ? | NC_000913 | 270541 = | NA (NA) | 60 (0.570) | 40/598 | 1.6 | 48.4% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 885700 = | 64 (0.600) | coding (432/816 nt) | ybjI | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase | |||||
| * | ? | NC_000913 | 270541 = | NA (NA) | 48 (0.450) | 39/598 | 1.7 | 51.6% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 1072346 | 45 (0.420) | coding (518/693 nt) | rutB | ureidoacrylate amidohydrolase | |||||
| * | ? | NC_000913 | 381263 = | NA (NA) | 54 (0.510) +ATA |
40/592 | 1.6 | 56.5% | noncoding (4/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 572732 | 42 (0.400) | coding (267/456 nt) | ybcN | DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 382590 | NA (NA) | 59 (0.560) | 46/596 | 1.1 | 59.6% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 572728 = | 40 (0.380) | coding (263/456 nt) | ybcN | DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 419642 = | 54 (0.510) | 59 (0.560) | 49/592 | 0.9 | 52.2% | coding (52/1320 nt) | brnQ | branched chain amino acid transporter BrnQ |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 741739 = | 47 (0.440) | 58 (0.550) | 38/598 | 1.8 | 55.2% | coding (818/1482 nt) | dtpD | dipeptide:H(+) symporter DtpD |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 885701 | 64 (0.600) | 68 (0.640) | 53/598 | 0.8 | 51.5% | coding (431/816 nt) | ybjI | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 891857 = | 49 (0.460) | 69 (0.650) | 50/598 | 0.9 | 58.5% | coding (674/723 nt) | nfsA | NADPH‑dependent nitro/quinone reductase NfsA |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 891858 | 47 (0.440) | 65 (0.610) | 47/598 | 1.1 | 58.0% | coding (675/723 nt) | nfsA | NADPH‑dependent nitro/quinone reductase NfsA |
| ? | NC_000913 | 1469296 = | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 910723 = | 38 (0.360) | 61 (0.570) | 43/598 | 1.4 | 61.6% | coding (327/1719 nt) | poxB | pyruvate oxidase |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 910724 | 38 (0.360) | 40 (0.380) | 30/594 | 2.6 | 51.3% | coding (326/1719 nt) | poxB | pyruvate oxidase |
| ? | NC_000913 | 1469296 = | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 913630 = | 41 (0.390) | 63 (0.600) | 46/594 | 1.1 | 60.6% | coding (185/1653 nt) | hcp | protein S‑nitrosylase |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 913631 | 41 (0.390) | 51 (0.480) | 35/598 | 2.1 | 55.4% | coding (184/1653 nt) | hcp | protein S‑nitrosylase |
| ? | NC_000913 | 1469296 = | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 1072345 = | 45 (0.420) | 57 (0.540) | 40/598 | 1.6 | 55.9% | coding (519/693 nt) | rutB | ureidoacrylate amidohydrolase |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 1245440 = | 100 (0.950) | 63 (0.600) | 46/594 | 1.1 | 38.6% | coding (281/441 nt) | ycgY | uncharacterized protein YcgY |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1245444 | 97 (0.910) | 60 (0.570) | 40/598 | 1.6 | 38.2% | coding (285/441 nt) | ycgY | uncharacterized protein YcgY |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1271235 = | 65 (0.610) | 71 (0.670) | 52/598 | 0.8 | 52.2% | coding (615/1101 nt) | chaA | Na(+)/K(+):H(+) antiporter ChaA |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 1271236 | 66 (0.630) | 41 (0.390) | 33/592 | 2.3 | 38.3% | coding (614/1101 nt) | chaA | Na(+)/K(+):H(+) antiporter ChaA |
| ? | NC_000913 | 1469296 = | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 133 (1.270) | 82/590 | 0.1 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1358421 = | 46 (0.430) | 56 (0.530) | 41/598 | 1.5 | 54.9% | coding (767/1386 nt) | puuP | putrescine:H(+) symporter PuuP |
| ? | NC_000913 | 1469296 = | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 1358422 | 46 (0.430) | 74 (0.700) | 59/598 | 0.5 | 61.7% | coding (766/1386 nt) | puuP | putrescine:H(+) symporter PuuP |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 111 (1.050) | 71/598 | 0.2 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | = 1469240 | NA (NA) | 49 (0.460) | 39/598 | 1.7 | 53.8% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1649354 | 42 (0.400) | intergenic (+313/‑28) | ydfC/dicF | uncharacterized protein YdfC/small regulatory RNA DicF | |||||
| * | ? | NC_000913 | 1469296 = | NA (NA) | 75 (0.710) | 49/598 | 1.0 | 54.7% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 2361883 = | 62 (0.580) | coding (329/783 nt) | yfaX | putative DNA‑binding transcriptional regulator YfaX | |||||
| * | ? | NC_000913 | 1469296 = | NA (NA) | 70 (0.660) | 51/598 | 0.9 | 52.6% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 2507735 | 63 (0.590) | coding (160/1248 nt) | fryC | putative PTS enzyme IIC component FryC | |||||
| * | ? | NC_000913 | 1469296 = | NA (NA) | 43 (0.400) | 31/598 | 2.5 | 50.6% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 4226887 | 42 (0.400) | coding (3060/3684 nt) | metH | cobalamin‑dependent methionine synthase | |||||
| * | ? | NC_000913 | = 1470516 | NA (NA) | 56 (0.530) | 46/598 | 1.2 | 46.7% | noncoding (1221/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 2361884 | 64 (0.600) | coding (328/783 nt) | yfaX | putative DNA‑binding transcriptional regulator YfaX | |||||
| * | ? | NC_000913 | 1649350 = | 42 (0.400) | 46 (0.430) | 34/598 | 2.2 | 52.3% | intergenic (+309/‑32) | ydfC/dicF | uncharacterized protein YdfC/small regulatory RNA DicF |
| ? | NC_000913 | = 1651548 | NA (NA) | noncoding (706/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 143 (1.350) | 96/598 | 0.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | 2507734 = | 63 (0.600) | 58 (0.550) | 43/592 | 1.3 | 47.9% | coding (161/1248 nt) | fryC | putative PTS enzyme IIC component FryC |
| ? | NC_000913 | 4507459 = | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 2771771 = | 89 (0.840) | 59 (0.560) | 44/598 | 1.3 | 39.9% | intergenic (+156/+69) | yfjT/yfjU | uncharacterized protein YfjT/putative arsenate reductase‑like protein YfjU |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2771775 | 90 (0.850) | 83 (0.780) | 62/598 | 0.4 | 48.0% | intergenic (+160/+65) | yfjT/yfjU | uncharacterized protein YfjT/putative arsenate reductase‑like protein YfjU |
| ? | NC_000913 | 2996361 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3012755 = | 62 (0.580) | 59 (0.560) | 37/598 | 1.9 | 48.8% | coding (1485/1626 nt) | yqeB | XdhC‑CoxI family protein YqeB |
| ? | NC_000913 | = 4508679 | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 3012756 | 62 (0.580) | 66 (0.620) | 52/598 | 0.8 | 51.6% | coding (1484/1626 nt) | yqeB | XdhC‑CoxI family protein YqeB |
| ? | NC_000913 | 4507459 = | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 3186096 = | NA (NA) | 55 (0.520) | 40/598 | 1.6 | 47.4% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3367956 | 61 (0.570) | coding (130/1128 nt) | yhcG | DUF1016 domain‑containing protein YhcG | |||||
| * | ? | NC_000913 | = 3187426 | NA (NA) | 42 (0.400) | 34/596 | 2.2 | 42.9% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 3367952 = | 56 (0.530) | coding (126/1128 nt) | yhcG | DUF1016 domain‑containing protein YhcG | |||||
| * | ? | NC_000913 | 4226886 = | 38 (0.360) | 70 (0.660) | 52/596 | 0.8 | 64.8% | coding (3059/3684 nt) | metH | cobalamin‑dependent methionine synthase |
| ? | NC_000913 | 4507459 = | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||